Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00895

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS00890 and HSERO_RS00895 are separated by 15 nucleotidesHSERO_RS00895 and HSERO_RS00900 are separated by 196 nucleotides HSERO_RS00890: HSERO_RS00890 - L-proline ABC transporter, permease component 2 (from data), at 185,026 to 186,240 _RS00890 HSERO_RS00895: HSERO_RS00895 - L-proline ABC transporter, ATPase component 1 (from data), at 186,256 to 187,023 _RS00895 HSERO_RS00900: HSERO_RS00900 - L-proline ABC transporter, ATPase component 2 (from data), at 187,220 to 187,945 _RS00900 Position (kb) 186 187 188Strain fitness (log2 ratio) -1 0 1at 185.459 kb on - strand, within HSERO_RS00890at 185.796 kb on - strand, within HSERO_RS00890at 186.395 kb on + strand, within HSERO_RS00895at 186.395 kb on + strand, within HSERO_RS00895at 186.936 kb on - strand, within HSERO_RS00895at 187.038 kb on - strandat 187.089 kb on - strandat 187.682 kb on + strand, within HSERO_RS00900at 188.009 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
remove
185,459 - HSERO_RS00890 0.36 -0.4
185,796 - HSERO_RS00890 0.63 -0.3
186,395 + HSERO_RS00895 0.18 -0.1
186,395 + HSERO_RS00895 0.18 +0.8
186,936 - HSERO_RS00895 0.89 +1.2
187,038 - +0.8
187,089 - -0.1
187,682 + HSERO_RS00900 0.64 -0.8
188,009 + -0.7

Or see this region's nucleotide sequence