Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00430

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS00425 and HSERO_RS00430 are separated by 347 nucleotidesHSERO_RS00430 and HSERO_RS00435 are separated by 38 nucleotides HSERO_RS00425: HSERO_RS00425 - ammonia channel protein, at 99,406 to 100,938 _RS00425 HSERO_RS00430: HSERO_RS00430 - glutamate--cysteine ligase, at 101,286 to 102,587 _RS00430 HSERO_RS00435: HSERO_RS00435 - glutathione synthetase, at 102,626 to 103,576 _RS00435 Position (kb) 101 102 103Strain fitness (log2 ratio) -1 0 1at 100.378 kb on + strand, within HSERO_RS00425at 100.433 kb on - strand, within HSERO_RS00425at 100.616 kb on + strand, within HSERO_RS00425at 100.675 kb on + strand, within HSERO_RS00425at 100.675 kb on + strand, within HSERO_RS00425at 100.773 kb on + strand, within HSERO_RS00425at 100.793 kb on - strandat 100.795 kb on + strandat 100.795 kb on + strandat 100.905 kb on - strandat 100.940 kb on - strandat 100.970 kb on - strandat 101.072 kb on + strandat 101.739 kb on - strand, within HSERO_RS00430at 101.773 kb on + strand, within HSERO_RS00430at 102.126 kb on + strand, within HSERO_RS00430at 102.256 kb on + strand, within HSERO_RS00430at 102.559 kb on + strandat 102.608 kb on + strandat 102.613 kb on - strandat 102.615 kb on + strandat 102.616 kb on - strandat 102.661 kb on + strandat 102.843 kb on + strand, within HSERO_RS00435at 102.843 kb on + strand, within HSERO_RS00435at 103.248 kb on + strand, within HSERO_RS00435at 103.249 kb on - strand, within HSERO_RS00435at 103.455 kb on + strand, within HSERO_RS00435at 103.580 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
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100,378 + HSERO_RS00425 0.63 +0.7
100,433 - HSERO_RS00425 0.67 -1.5
100,616 + HSERO_RS00425 0.79 +0.0
100,675 + HSERO_RS00425 0.83 -0.1
100,675 + HSERO_RS00425 0.83 -0.1
100,773 + HSERO_RS00425 0.89 +0.7
100,793 - -0.2
100,795 + -0.5
100,795 + -0.5
100,905 - +1.5
100,940 - +1.4
100,970 - -0.4
101,072 + -0.3
101,739 - HSERO_RS00430 0.35 -0.2
101,773 + HSERO_RS00430 0.37 +0.1
102,126 + HSERO_RS00430 0.65 +0.1
102,256 + HSERO_RS00430 0.75 +0.9
102,559 + +0.4
102,608 + -0.2
102,613 - -0.3
102,615 + +0.0
102,616 - -0.3
102,661 + -0.7
102,843 + HSERO_RS00435 0.23 +0.9
102,843 + HSERO_RS00435 0.23 +0.5
103,248 + HSERO_RS00435 0.65 -0.1
103,249 - HSERO_RS00435 0.66 -0.7
103,455 + HSERO_RS00435 0.87 -0.6
103,580 - -0.3

Or see this region's nucleotide sequence