Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00260

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS00255 and HSERO_RS00260 overlap by 4 nucleotidesHSERO_RS00260 and HSERO_RS00265 are separated by 19 nucleotides HSERO_RS00255: HSERO_RS00255 - iron transporter FeoB, at 64,343 to 66,169 _RS00255 HSERO_RS00260: HSERO_RS00260 - hypothetical protein, at 66,166 to 66,453 _RS00260 HSERO_RS00265: HSERO_RS00265 - threonine dehydratase, at 66,473 to 67,678 _RS00265 Position (kb) 66 67Strain fitness (log2 ratio) -1 0 1 2at 65.180 kb on + strand, within HSERO_RS00255at 65.338 kb on - strand, within HSERO_RS00255at 65.481 kb on + strand, within HSERO_RS00255at 65.726 kb on + strand, within HSERO_RS00255at 65.726 kb on + strand, within HSERO_RS00255at 65.778 kb on - strand, within HSERO_RS00255at 65.812 kb on - strand, within HSERO_RS00255at 65.820 kb on + strand, within HSERO_RS00255at 65.925 kb on - strand, within HSERO_RS00255at 65.954 kb on + strand, within HSERO_RS00255at 65.962 kb on - strand, within HSERO_RS00255at 66.118 kb on + strandat 66.118 kb on + strandat 66.148 kb on - strandat 66.149 kb on - strandat 66.363 kb on - strand, within HSERO_RS00260at 66.709 kb on + strand, within HSERO_RS00265at 66.795 kb on - strand, within HSERO_RS00265at 66.969 kb on - strand, within HSERO_RS00265at 67.049 kb on - strand, within HSERO_RS00265at 67.180 kb on - strand, within HSERO_RS00265

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
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65,180 + HSERO_RS00255 0.46 -0.4
65,338 - HSERO_RS00255 0.54 -0.1
65,481 + HSERO_RS00255 0.62 +0.4
65,726 + HSERO_RS00255 0.76 -0.2
65,726 + HSERO_RS00255 0.76 +0.5
65,778 - HSERO_RS00255 0.79 +0.4
65,812 - HSERO_RS00255 0.80 +0.5
65,820 + HSERO_RS00255 0.81 -0.5
65,925 - HSERO_RS00255 0.87 -0.1
65,954 + HSERO_RS00255 0.88 +1.1
65,962 - HSERO_RS00255 0.89 +0.8
66,118 + -0.5
66,118 + +2.0
66,148 - +0.9
66,149 - +0.0
66,363 - HSERO_RS00260 0.68 +0.4
66,709 + HSERO_RS00265 0.20 +1.1
66,795 - HSERO_RS00265 0.27 -0.9
66,969 - HSERO_RS00265 0.41 +0.7
67,049 - HSERO_RS00265 0.48 -0.7
67,180 - HSERO_RS00265 0.59 +0.4

Or see this region's nucleotide sequence