Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20925 and BWI76_RS20930 are separated by 9 nucleotides BWI76_RS20930 and BWI76_RS20935 are separated by 28 nucleotides BWI76_RS20935 and BWI76_RS20940 are separated by 71 nucleotides
BWI76_RS20925: BWI76_RS20925 - peptidase M48, at 4,374,919 to 4,376,382
_RS20925
BWI76_RS20930: BWI76_RS20930 - arsenate reductase (glutaredoxin), at 4,376,392 to 4,376,751
_RS20930
BWI76_RS20935: BWI76_RS20935 - DnaA regulatory inactivator Hda, at 4,376,780 to 4,377,505
_RS20935
BWI76_RS20940: BWI76_RS20940 - uracil/xanthine transporter, at 4,377,577 to 4,378,866
_RS20940
Position (kb) 4376
4377
4378 Strain fitness (log2 ratio) -1
0
1 at 4375.849 kb on + strand, within BWI76_RS20925 at 4375.860 kb on - strand, within BWI76_RS20925 at 4375.877 kb on - strand, within BWI76_RS20925 at 4376.118 kb on + strand, within BWI76_RS20925 at 4376.308 kb on - strand at 4376.437 kb on - strand, within BWI76_RS20930 at 4376.447 kb on + strand, within BWI76_RS20930 at 4376.761 kb on + strand at 4377.517 kb on + strand at 4377.548 kb on - strand at 4377.568 kb on + strand at 4377.576 kb on - strand at 4377.703 kb on - strand at 4377.768 kb on - strand, within BWI76_RS20940 at 4378.272 kb on + strand, within BWI76_RS20940
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 4,375,849 + BWI76_RS20925 0.64 +0.2 4,375,860 - BWI76_RS20925 0.64 +1.1 4,375,877 - BWI76_RS20925 0.65 +1.0 4,376,118 + BWI76_RS20925 0.82 -0.3 4,376,308 - +0.4 4,376,437 - BWI76_RS20930 0.12 -0.0 4,376,447 + BWI76_RS20930 0.15 +0.4 4,376,761 + -0.4 4,377,517 + +0.7 4,377,548 - -1.0 4,377,568 + -0.5 4,377,576 - -0.0 4,377,703 - +1.1 4,377,768 - BWI76_RS20940 0.15 -0.8 4,378,272 + BWI76_RS20940 0.54 -1.5
Or see this region's nucleotide sequence