Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17015 and BWI76_RS17020 are separated by 44 nucleotides BWI76_RS17020 and BWI76_RS17025 are separated by 58 nucleotides BWI76_RS17025 and BWI76_RS17030 are separated by 432 nucleotides
BWI76_RS17015: BWI76_RS17015 - fimbrial assembly protein, at 3,528,113 to 3,530,656
_RS17015
BWI76_RS17020: BWI76_RS17020 - chaperone protein LpfB, at 3,530,701 to 3,531,378
_RS17020
BWI76_RS17025: BWI76_RS17025 - putative major type 1 subunit fimbrin, at 3,531,437 to 3,531,967
_RS17025
BWI76_RS17030: BWI76_RS17030 - cyclic nucleotide-binding domain-containing protein, at 3,532,400 to 3,533,059
_RS17030
Position (kb)
3531
3532 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3530.438 kb on - strand at 3530.438 kb on - strand at 3530.484 kb on - strand at 3530.487 kb on - strand at 3530.519 kb on - strand at 3530.520 kb on + strand at 3530.521 kb on + strand at 3530.521 kb on + strand at 3530.521 kb on + strand at 3530.521 kb on + strand at 3530.521 kb on + strand at 3530.521 kb on + strand at 3530.521 kb on + strand at 3530.521 kb on + strand at 3530.521 kb on + strand at 3530.521 kb on + strand at 3530.521 kb on + strand at 3530.521 kb on + strand at 3530.528 kb on - strand at 3530.528 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.529 kb on - strand at 3530.534 kb on - strand at 3530.543 kb on - strand at 3530.573 kb on - strand at 3530.576 kb on - strand at 3530.576 kb on - strand at 3530.611 kb on - strand at 3530.611 kb on - strand at 3530.659 kb on + strand at 3530.677 kb on - strand at 3530.679 kb on + strand at 3530.692 kb on + strand at 3530.692 kb on + strand at 3530.692 kb on + strand at 3530.692 kb on + strand at 3530.692 kb on + strand at 3530.692 kb on + strand at 3530.692 kb on + strand at 3530.692 kb on + strand at 3530.692 kb on - strand at 3530.700 kb on - strand at 3530.700 kb on - strand at 3530.700 kb on - strand at 3530.707 kb on - strand at 3530.708 kb on - strand at 3530.710 kb on + strand at 3530.714 kb on - strand at 3530.718 kb on - strand at 3530.718 kb on - strand at 3530.723 kb on + strand at 3530.731 kb on - strand at 3530.731 kb on - strand at 3530.742 kb on - strand at 3530.794 kb on + strand, within BWI76_RS17020 at 3530.802 kb on - strand, within BWI76_RS17020 at 3530.802 kb on - strand, within BWI76_RS17020 at 3530.804 kb on + strand, within BWI76_RS17020 at 3530.838 kb on + strand, within BWI76_RS17020 at 3530.883 kb on + strand, within BWI76_RS17020 at 3530.883 kb on + strand, within BWI76_RS17020 at 3530.883 kb on + strand, within BWI76_RS17020 at 3530.883 kb on + strand, within BWI76_RS17020 at 3530.883 kb on + strand, within BWI76_RS17020 at 3530.891 kb on - strand, within BWI76_RS17020 at 3530.891 kb on - strand, within BWI76_RS17020 at 3530.891 kb on - strand, within BWI76_RS17020 at 3530.891 kb on - strand, within BWI76_RS17020 at 3530.891 kb on - strand, within BWI76_RS17020 at 3530.904 kb on + strand, within BWI76_RS17020 at 3530.906 kb on - strand, within BWI76_RS17020 at 3530.906 kb on - strand, within BWI76_RS17020 at 3530.952 kb on + strand, within BWI76_RS17020 at 3530.952 kb on + strand, within BWI76_RS17020 at 3530.960 kb on - strand, within BWI76_RS17020 at 3530.960 kb on - strand, within BWI76_RS17020 at 3531.028 kb on - strand, within BWI76_RS17020 at 3531.028 kb on - strand, within BWI76_RS17020 at 3531.075 kb on - strand, within BWI76_RS17020 at 3531.075 kb on - strand, within BWI76_RS17020 at 3531.099 kb on - strand, within BWI76_RS17020 at 3531.131 kb on + strand, within BWI76_RS17020 at 3531.136 kb on + strand, within BWI76_RS17020 at 3531.136 kb on + strand, within BWI76_RS17020 at 3531.136 kb on + strand, within BWI76_RS17020 at 3531.136 kb on + strand, within BWI76_RS17020 at 3531.140 kb on + strand, within BWI76_RS17020 at 3531.140 kb on + strand, within BWI76_RS17020 at 3531.140 kb on + strand, within BWI76_RS17020 at 3531.144 kb on - strand, within BWI76_RS17020 at 3531.144 kb on - strand, within BWI76_RS17020 at 3531.144 kb on - strand, within BWI76_RS17020 at 3531.145 kb on + strand, within BWI76_RS17020 at 3531.145 kb on + strand, within BWI76_RS17020 at 3531.145 kb on + strand, within BWI76_RS17020 at 3531.145 kb on + strand, within BWI76_RS17020 at 3531.153 kb on - strand, within BWI76_RS17020 at 3531.153 kb on - strand, within BWI76_RS17020 at 3531.198 kb on + strand, within BWI76_RS17020 at 3531.325 kb on - strand at 3531.325 kb on - strand at 3531.333 kb on + strand at 3531.355 kb on + strand at 3531.372 kb on + strand at 3531.386 kb on - strand at 3531.387 kb on + strand at 3531.392 kb on + strand at 3531.400 kb on + strand at 3531.403 kb on - strand at 3531.409 kb on - strand at 3531.409 kb on - strand at 3531.411 kb on + strand at 3531.411 kb on + strand at 3531.411 kb on + strand at 3531.414 kb on - strand at 3531.414 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.419 kb on - strand at 3531.424 kb on - strand at 3531.458 kb on - strand at 3531.476 kb on - strand at 3531.479 kb on + strand at 3531.541 kb on - strand, within BWI76_RS17025 at 3531.543 kb on + strand, within BWI76_RS17025 at 3531.551 kb on - strand, within BWI76_RS17025 at 3531.556 kb on - strand, within BWI76_RS17025 at 3531.561 kb on - strand, within BWI76_RS17025 at 3531.563 kb on - strand, within BWI76_RS17025 at 3531.583 kb on - strand, within BWI76_RS17025 at 3531.586 kb on - strand, within BWI76_RS17025 at 3531.586 kb on - strand, within BWI76_RS17025 at 3531.589 kb on + strand, within BWI76_RS17025 at 3531.597 kb on - strand, within BWI76_RS17025 at 3531.597 kb on - strand at 3531.602 kb on - strand at 3531.675 kb on - strand, within BWI76_RS17025 at 3531.714 kb on - strand, within BWI76_RS17025 at 3531.714 kb on - strand, within BWI76_RS17025 at 3531.724 kb on - strand, within BWI76_RS17025 at 3531.979 kb on - strand at 3531.979 kb on - strand at 3532.003 kb on - strand at 3532.025 kb on - strand at 3532.069 kb on - strand at 3532.081 kb on - strand at 3532.084 kb on - strand at 3532.105 kb on - strand at 3532.105 kb on - strand at 3532.105 kb on - strand at 3532.395 kb on + strand at 3532.452 kb on + strand at 3532.462 kb on - strand at 3532.580 kb on + strand, within BWI76_RS17030 at 3532.585 kb on + strand, within BWI76_RS17030 at 3532.595 kb on + strand, within BWI76_RS17030 at 3532.595 kb on + strand, within BWI76_RS17030 at 3532.669 kb on + strand, within BWI76_RS17030 at 3532.669 kb on + strand, within BWI76_RS17030 at 3532.697 kb on + strand, within BWI76_RS17030 at 3532.705 kb on - strand, within BWI76_RS17030 at 3532.740 kb on - strand, within BWI76_RS17030 at 3532.759 kb on + strand, within BWI76_RS17030 at 3532.792 kb on + strand, within BWI76_RS17030 at 3532.792 kb on + strand, within BWI76_RS17030 at 3532.792 kb on + strand, within BWI76_RS17030 at 3532.803 kb on + strand, within BWI76_RS17030 at 3532.810 kb on + strand, within BWI76_RS17030 at 3532.812 kb on + strand, within BWI76_RS17030 at 3532.820 kb on - strand, within BWI76_RS17030 at 3532.820 kb on - strand, within BWI76_RS17030 at 3532.863 kb on + strand, within BWI76_RS17030 at 3532.925 kb on + strand, within BWI76_RS17030 at 3532.931 kb on + strand, within BWI76_RS17030
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 3,530,438 - -0.1 3,530,438 - +0.6 3,530,484 - -0.2 3,530,487 - -0.5 3,530,519 - +0.8 3,530,520 + -1.8 3,530,521 + -0.1 3,530,521 + +0.0 3,530,521 + -0.4 3,530,521 + +0.4 3,530,521 + -0.2 3,530,521 + +2.3 3,530,521 + +0.8 3,530,521 + -0.6 3,530,521 + -0.2 3,530,521 + -0.5 3,530,521 + -0.3 3,530,521 + -0.4 3,530,528 - +0.8 3,530,528 - +0.3 3,530,529 - +0.1 3,530,529 - -0.1 3,530,529 - -1.1 3,530,529 - +0.4 3,530,529 - +0.5 3,530,529 - -0.5 3,530,529 - +0.2 3,530,529 - -0.1 3,530,529 - -1.4 3,530,529 - -0.1 3,530,529 - +0.0 3,530,529 - -0.3 3,530,529 - -0.2 3,530,529 - -0.5 3,530,529 - -0.3 3,530,529 - -0.3 3,530,529 - +0.3 3,530,529 - +0.3 3,530,534 - -2.1 3,530,543 - +0.9 3,530,573 - +0.2 3,530,576 - +1.1 3,530,576 - +0.9 3,530,611 - +1.1 3,530,611 - -0.4 3,530,659 + -1.0 3,530,677 - +0.3 3,530,679 + +0.5 3,530,692 + +0.9 3,530,692 + +0.7 3,530,692 + -0.1 3,530,692 + -0.1 3,530,692 + -0.0 3,530,692 + -1.7 3,530,692 + +0.3 3,530,692 + +0.5 3,530,692 - +1.2 3,530,700 - +0.9 3,530,700 - +0.3 3,530,700 - -0.1 3,530,707 - +0.5 3,530,708 - +0.4 3,530,710 + +0.3 3,530,714 - +0.0 3,530,718 - -0.2 3,530,718 - -0.8 3,530,723 + +0.7 3,530,731 - +0.4 3,530,731 - -0.4 3,530,742 - -0.3 3,530,794 + BWI76_RS17020 0.14 -0.9 3,530,802 - BWI76_RS17020 0.15 +0.6 3,530,802 - BWI76_RS17020 0.15 +0.1 3,530,804 + BWI76_RS17020 0.15 -2.1 3,530,838 + BWI76_RS17020 0.20 -0.3 3,530,883 + BWI76_RS17020 0.27 -0.8 3,530,883 + BWI76_RS17020 0.27 -0.9 3,530,883 + BWI76_RS17020 0.27 +0.5 3,530,883 + BWI76_RS17020 0.27 -1.1 3,530,883 + BWI76_RS17020 0.27 -1.1 3,530,891 - BWI76_RS17020 0.28 +0.3 3,530,891 - BWI76_RS17020 0.28 +0.9 3,530,891 - BWI76_RS17020 0.28 -0.1 3,530,891 - BWI76_RS17020 0.28 +0.3 3,530,891 - BWI76_RS17020 0.28 -0.3 3,530,904 + BWI76_RS17020 0.30 -1.2 3,530,906 - BWI76_RS17020 0.30 +0.7 3,530,906 - BWI76_RS17020 0.30 +0.7 3,530,952 + BWI76_RS17020 0.37 -0.1 3,530,952 + BWI76_RS17020 0.37 -1.2 3,530,960 - BWI76_RS17020 0.38 -0.8 3,530,960 - BWI76_RS17020 0.38 -2.4 3,531,028 - BWI76_RS17020 0.48 -1.2 3,531,028 - BWI76_RS17020 0.48 +0.8 3,531,075 - BWI76_RS17020 0.55 -1.8 3,531,075 - BWI76_RS17020 0.55 +0.1 3,531,099 - BWI76_RS17020 0.59 -1.2 3,531,131 + BWI76_RS17020 0.63 -0.4 3,531,136 + BWI76_RS17020 0.64 +1.2 3,531,136 + BWI76_RS17020 0.64 -0.3 3,531,136 + BWI76_RS17020 0.64 -0.8 3,531,136 + BWI76_RS17020 0.64 +0.3 3,531,140 + BWI76_RS17020 0.65 -0.3 3,531,140 + BWI76_RS17020 0.65 +0.3 3,531,140 + BWI76_RS17020 0.65 +0.7 3,531,144 - BWI76_RS17020 0.65 +1.3 3,531,144 - BWI76_RS17020 0.65 +0.8 3,531,144 - BWI76_RS17020 0.65 +0.6 3,531,145 + BWI76_RS17020 0.65 +1.0 3,531,145 + BWI76_RS17020 0.65 -0.1 3,531,145 + BWI76_RS17020 0.65 -1.0 3,531,145 + BWI76_RS17020 0.65 -0.1 3,531,153 - BWI76_RS17020 0.67 +0.6 3,531,153 - BWI76_RS17020 0.67 -0.1 3,531,198 + BWI76_RS17020 0.73 +0.7 3,531,325 - +1.1 3,531,325 - -0.6 3,531,333 + -0.2 3,531,355 + +0.5 3,531,372 + +1.6 3,531,386 - -2.5 3,531,387 + +0.9 3,531,392 + +1.3 3,531,400 + -1.1 3,531,403 - -1.8 3,531,409 - +0.3 3,531,409 - -0.4 3,531,411 + +0.2 3,531,411 + +0.2 3,531,411 + +1.9 3,531,414 - +0.3 3,531,414 - -1.0 3,531,419 - +0.3 3,531,419 - -0.0 3,531,419 - -0.9 3,531,419 - -0.6 3,531,419 - -0.1 3,531,419 - +1.5 3,531,419 - +0.3 3,531,419 - -0.9 3,531,419 - -0.7 3,531,419 - +0.1 3,531,419 - -1.3 3,531,419 - -0.8 3,531,419 - +0.3 3,531,419 - +0.6 3,531,419 - +0.3 3,531,419 - +0.1 3,531,419 - -1.2 3,531,419 - -0.4 3,531,424 - -0.5 3,531,458 - +0.3 3,531,476 - -0.0 3,531,479 + -0.5 3,531,541 - BWI76_RS17025 0.20 -1.4 3,531,543 + BWI76_RS17025 0.20 +1.1 3,531,551 - BWI76_RS17025 0.21 -1.3 3,531,556 - BWI76_RS17025 0.22 -0.1 3,531,561 - BWI76_RS17025 0.23 -0.7 3,531,563 - BWI76_RS17025 0.24 -0.1 3,531,583 - BWI76_RS17025 0.27 -1.2 3,531,586 - BWI76_RS17025 0.28 +1.1 3,531,586 - BWI76_RS17025 0.28 +1.2 3,531,589 + BWI76_RS17025 0.29 -1.8 3,531,597 - BWI76_RS17025 0.30 -0.3 3,531,597 - +0.3 3,531,602 - +1.3 3,531,675 - BWI76_RS17025 0.45 -1.8 3,531,714 - BWI76_RS17025 0.52 -0.8 3,531,714 - BWI76_RS17025 0.52 -0.4 3,531,724 - BWI76_RS17025 0.54 -1.7 3,531,979 - -1.1 3,531,979 - -1.5 3,532,003 - -1.1 3,532,025 - +0.3 3,532,069 - -0.7 3,532,081 - -1.4 3,532,084 - +0.2 3,532,105 - +0.7 3,532,105 - -1.3 3,532,105 - +1.7 3,532,395 + -0.5 3,532,452 + -0.9 3,532,462 - +0.7 3,532,580 + BWI76_RS17030 0.27 -0.5 3,532,585 + BWI76_RS17030 0.28 +0.7 3,532,595 + BWI76_RS17030 0.30 +1.6 3,532,595 + BWI76_RS17030 0.30 +0.3 3,532,669 + BWI76_RS17030 0.41 +2.2 3,532,669 + BWI76_RS17030 0.41 +0.0 3,532,697 + BWI76_RS17030 0.45 +0.1 3,532,705 - BWI76_RS17030 0.46 -1.1 3,532,740 - BWI76_RS17030 0.52 +0.2 3,532,759 + BWI76_RS17030 0.54 -0.7 3,532,792 + BWI76_RS17030 0.59 -1.0 3,532,792 + BWI76_RS17030 0.59 +0.5 3,532,792 + BWI76_RS17030 0.59 +1.1 3,532,803 + BWI76_RS17030 0.61 +0.6 3,532,810 + BWI76_RS17030 0.62 -0.7 3,532,812 + BWI76_RS17030 0.62 +0.3 3,532,820 - BWI76_RS17030 0.64 -1.1 3,532,820 - BWI76_RS17030 0.64 +0.9 3,532,863 + BWI76_RS17030 0.70 -0.8 3,532,925 + BWI76_RS17030 0.80 +0.6 3,532,931 + BWI76_RS17030 0.80 -0.3
Or see this region's nucleotide sequence