Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19665

Experiment: Nitrate reduction with yeast extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction with yeast extract
4,407,564	+		AO356_19655	0.77	-0.4
4,407,564	+		AO356_19655	0.77	-0.8
4,407,565	-		AO356_19655	0.77	+0.6
4,407,758	+				+0.1
4,407,758	+				+2.6
4,407,758	+				+0.8
4,407,758	+				-2.2
4,407,758	+				+0.5
4,407,759	-				-1.0
4,407,759	-				+0.4
4,407,759	-				+0.5
4,407,759	-				+0.7
4,407,759	-				+0.8
4,407,759	-				+0.0
4,407,763	-				+0.2
4,407,763	-				-0.9
4,407,837	+				-0.1
4,407,837	+				+2.0
4,407,883	+				+1.0
4,407,884	-				+0.6
4,407,884	-				-1.7
4,407,884	-				+1.7
4,408,004	+				+0.5
4,408,004	+				+1.2
4,408,004	+				-2.0
4,408,004	+				-0.6
4,408,004	+				+3.0
4,408,004	+				+1.2
4,408,004	+				-2.5
4,408,007	+				-0.5
4,408,007	+				-0.6
4,408,008	-				-0.9
4,408,008	-				+0.2
4,408,008	-				-1.5
4,408,008	-				+1.0
4,408,010	+				+0.2
4,408,010	+				-0.1
4,408,010	+				-1.1
4,408,010	+				-1.0
4,408,011	-				-0.1
4,408,011	-				-1.1
4,408,011	-				+0.4
4,408,011	-				-0.6
4,408,042	+				-1.2
4,408,042	+				-2.1
4,408,043	-				-0.8
4,408,043	-				-0.1
4,408,047	+				-1.8
4,408,047	+				-2.6
4,408,047	+				+0.3
4,408,047	+				+0.9
4,408,048	-				+0.6
4,408,048	-				+0.7
4,408,048	-				-1.3
4,408,048	-				+2.7
4,408,062	+				+1.9
4,408,062	+				-1.6
4,408,063	-				+1.4
4,408,063	-				+1.7
4,408,104	+				+1.1
4,408,104	+				-1.7
4,408,105	-				+0.2
4,408,105	-				-2.4
4,408,105	-				-1.7
4,408,105	-				+0.2
4,408,105	-				-0.4
4,408,280	+		AO356_19660	0.61	+2.4
4,408,332	+		AO356_19660	0.78	+1.9
4,408,332	+		AO356_19660	0.78	-1.5
4,408,332	+		AO356_19660	0.78	+0.2
4,408,332	+		AO356_19660	0.78	+0.6
4,408,333	-		AO356_19660	0.78	-1.7
4,408,333	-		AO356_19660	0.78	+0.0
4,408,333	-		AO356_19660	0.78	+0.9
4,408,333	-		AO356_19660	0.78	-0.6
4,408,333	-		AO356_19660	0.78	+0.8
4,408,333	-		AO356_19660	0.78	+1.3
4,408,544	+				+0.7
4,408,544	+				+3.0
4,408,544	+				-0.1
4,408,545	-				-0.5
4,408,545	-				-3.4
4,408,553	+				+1.2
4,408,554	-				+1.3
4,408,589	+		AO356_19665	0.12	-1.6
4,408,589	+		AO356_19665	0.12	-1.9
4,408,589	+		AO356_19665	0.12	-1.0
4,408,589	+		AO356_19665	0.12	+0.6
4,408,589	+		AO356_19665	0.12	+1.5
4,408,589	+		AO356_19665	0.12	+0.8
4,408,590	-		AO356_19665	0.12	+1.8
4,408,592	+		AO356_19665	0.12	-0.2
4,408,592	+		AO356_19665	0.12	+1.1
4,408,592	+		AO356_19665	0.12	+2.4
4,408,592	+		AO356_19665	0.12	+0.6
4,408,593	-		AO356_19665	0.12	+1.2
4,408,593	-		AO356_19665	0.12	+3.5
4,408,649	+		AO356_19665	0.15	+0.6
4,408,649	+		AO356_19665	0.15	-0.8
4,408,649	+		AO356_19665	0.15	+0.9
4,408,650	-		AO356_19665	0.15	-1.8
4,408,650	-		AO356_19665	0.15	+0.3
4,408,650	-		AO356_19665	0.15	+1.3
4,408,650	-		AO356_19665	0.15	+1.9
4,408,650	-		AO356_19665	0.15	-1.7
4,408,704	-		AO356_19665	0.19	+0.4
4,408,718	+		AO356_19665	0.19	+0.9
4,408,718	+		AO356_19665	0.19	+0.5
4,408,718	+		AO356_19665	0.19	+1.3
4,408,719	-		AO356_19665	0.19	-2.4
4,408,789	+		AO356_19665	0.24	+1.5
4,408,790	-		AO356_19665	0.24	+1.9
4,408,793	+		AO356_19665	0.24	+0.3
4,408,793	+		AO356_19665	0.24	+1.2
4,408,793	+		AO356_19665	0.24	-0.4
4,408,793	+		AO356_19665	0.24	+0.9
4,408,794	-		AO356_19665	0.24	-1.5
4,408,794	-		AO356_19665	0.24	-0.5
4,408,818	-		AO356_19665	0.25	-0.8
4,408,843	+		AO356_19665	0.27	-0.0
4,408,843	+		AO356_19665	0.27	-0.7
4,408,843	+		AO356_19665	0.27	+1.2
4,408,843	+		AO356_19665	0.27	-0.1
4,408,843	+		AO356_19665	0.27	-0.2
4,408,844	-		AO356_19665	0.27	+2.0
4,408,883	+		AO356_19665	0.29	+3.4
4,408,883	+		AO356_19665	0.29	-0.4
4,408,884	-		AO356_19665	0.29	+1.5
4,408,943	+		AO356_19665	0.33	+1.1
4,408,944	-		AO356_19665	0.33	+1.1
4,408,985	+		AO356_19665	0.35	-0.9
4,408,985	+		AO356_19665	0.35	+1.7
4,408,985	+		AO356_19665	0.35	-1.8
4,408,985	+		AO356_19665	0.35	-0.8
4,408,985	+		AO356_19665	0.35	+2.0
4,408,985	+		AO356_19665	0.35	+1.1
4,408,985	+		AO356_19665	0.35	-1.7
4,408,986	-		AO356_19665	0.36	+0.3
4,408,986	-		AO356_19665	0.36	-2.3
4,408,986	-		AO356_19665	0.36	-1.9
4,408,986	-		AO356_19665	0.36	+1.8
4,408,986	-		AO356_19665	0.36	+0.7
4,409,140	+		AO356_19665	0.45	-1.1
4,409,296	-		AO356_19665	0.54	+0.7
4,409,300	+		AO356_19665	0.54	+0.7
4,409,300	+		AO356_19665	0.54	-0.3
4,409,300	+		AO356_19665	0.54	-0.1
4,409,300	+		AO356_19665	0.54	+0.5
4,409,301	-		AO356_19665	0.54	-0.1
4,409,301	-		AO356_19665	0.54	+1.6
4,409,301	-		AO356_19665	0.54	+1.3
4,409,301	-		AO356_19665	0.54	-1.4
4,409,321	+		AO356_19665	0.56	+0.3
4,409,321	+		AO356_19665	0.56	-0.3
4,409,321	+		AO356_19665	0.56	+0.1
4,409,322	-		AO356_19665	0.56	-1.9
4,409,322	-		AO356_19665	0.56	+0.3
4,409,322	-		AO356_19665	0.56	-2.0
4,409,322	-		AO356_19665	0.56	-0.3
4,409,327	+		AO356_19665	0.56	+0.7
4,409,327	+		AO356_19665	0.56	-1.2
4,409,327	+		AO356_19665	0.56	+0.7
4,409,327	+		AO356_19665	0.56	-1.8
4,409,327	+		AO356_19665	0.56	-0.5
4,409,327	+		AO356_19665	0.56	+0.5
4,409,327	+		AO356_19665	0.56	-1.7
4,409,327	+		AO356_19665	0.56	+0.4
4,409,327	+		AO356_19665	0.56	-2.0
4,409,327	+		AO356_19665	0.56	-1.0
4,409,327	+		AO356_19665	0.56	+0.9
4,409,327	+		AO356_19665	0.56	-1.7
4,409,328	-		AO356_19665	0.56	+1.7
4,409,328	-		AO356_19665	0.56	+0.1
4,409,328	-		AO356_19665	0.56	+0.5
4,409,328	-		AO356_19665	0.56	-2.1
4,409,328	-		AO356_19665	0.56	+2.5
4,409,328	-		AO356_19665	0.56	-0.7
4,409,328	-		AO356_19665	0.56	+1.6
4,409,328	-		AO356_19665	0.56	+0.5
4,409,328	-		AO356_19665	0.56	+0.5
4,409,328	-		AO356_19665	0.56	+2.0
4,409,328	-		AO356_19665	0.56	+3.4
4,409,328	-		AO356_19665	0.56	+2.0
4,409,330	-		AO356_19665	0.56	+0.5
4,409,330	-		AO356_19665	0.56	-0.9
4,409,420	-		AO356_19665	0.62	-0.3
4,409,422	+		AO356_19665	0.62	+0.4
4,409,422	+		AO356_19665	0.62	+0.4
4,409,422	+		AO356_19665	0.62	+1.5
4,409,422	+		AO356_19665	0.62	+0.2
4,409,422	+		AO356_19665	0.62	-1.6
4,409,422	+		AO356_19665	0.62	-2.3
4,409,423	-		AO356_19665	0.62	+1.4
4,409,423	-		AO356_19665	0.62	+0.4
4,409,564	+		AO356_19665	0.70	-0.0
4,409,564	+		AO356_19665	0.70	+1.3
4,409,564	+		AO356_19665	0.70	-0.6
4,409,565	-		AO356_19665	0.70	-1.2
4,409,759	+		AO356_19665	0.82	+0.3
4,409,891	+				+1.1
4,409,892	-				-2.0
4,409,897	+				+1.2
4,410,058	+				+1.7
4,410,059	-				+0.7
4,410,059	-				+1.1
4,410,059	-				-0.1
4,410,064	+				-0.8
4,410,231	+				+1.5
4,410,231	+				-1.4
4,410,231	+				-0.0
4,410,232	-				+2.1
4,410,232	-				-0.4
4,410,232	-				-0.4
4,410,265	+				+1.1
4,410,265	+				+1.0
4,410,265	+				+0.1
4,410,266	-				-0.2
4,410,266	-				+0.0
4,410,266	-				+1.6
4,410,267	+				+1.2
4,410,267	+				+0.4
4,410,267	+				-0.1
4,410,267	+				+1.7
4,410,267	+				-0.8
4,410,268	-				+0.3
4,410,268	-				-1.0
4,410,268	-				-0.8
4,410,268	-				-1.2
4,410,268	-				-1.0
4,410,268	-				-2.4
4,410,268	-				-0.8
4,410,269	+				-2.0
4,410,269	+				+1.2
4,410,269	+				+2.2
4,410,269	+				-1.2
4,410,270	-				-0.4
4,410,270	-				+1.4
4,410,270	-				+1.6
4,410,270	-				+1.7
4,410,270	-				+1.1
4,410,270	-				-1.2
4,410,305	+				-2.1
4,410,322	+				-1.9
4,410,322	+				-1.8
4,410,322	+				-0.1
4,410,323	-				+0.1
4,410,323	-				+0.6