Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16355

Experiment: Nitrate reduction with yeast extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction with yeast extract
3,696,057	+		AO356_16345	0.87	+0.9
3,696,057	+		AO356_16345	0.87	+1.2
3,696,057	+		AO356_16345	0.87	+1.8
3,696,057	+		AO356_16345	0.87	+0.2
3,696,058	-		AO356_16345	0.87	+1.6
3,696,058	-		AO356_16345	0.87	+0.0
3,696,058	-		AO356_16345	0.87	+0.2
3,696,058	-		AO356_16345	0.87	-2.0
3,696,058	-		AO356_16345	0.87	-0.2
3,696,058	-		AO356_16345	0.87	+1.1
3,696,099	+		AO356_16345	0.89	+1.4
3,696,099	+		AO356_16345	0.89	+0.6
3,696,100	-		AO356_16345	0.89	-1.2
3,696,100	-		AO356_16345	0.89	-0.3
3,696,118	-				+1.1
3,696,265	+				+0.2
3,696,265	+				-1.6
3,696,266	-				-0.7
3,696,266	-				-0.5
3,696,266	-				+2.6
3,696,266	-				+0.9
3,696,276	+				+2.3
3,696,276	+				-0.5
3,696,277	-				-0.3
3,696,283	+				-1.7
3,696,283	+				-1.0
3,696,283	+				-0.1
3,696,283	+				-1.1
3,696,283	+				+2.6
3,696,284	-				+1.6
3,696,284	-				+0.3
3,696,691	+		AO356_16350	0.74	-2.3
3,696,691	+		AO356_16350	0.74	-0.2
3,696,691	+		AO356_16350	0.74	-0.8
3,696,691	+		AO356_16350	0.74	+1.1
3,696,691	+		AO356_16350	0.74	-1.9
3,696,691	+		AO356_16350	0.74	+0.6
3,696,692	-		AO356_16350	0.74	+1.2
3,696,793	+				-0.3
3,696,794	-				+0.9
3,696,870	-				+1.5
3,696,896	+				+1.6
3,696,896	+				+1.2
3,696,896	+				-0.1
3,696,896	+				+1.3
3,696,896	+				+0.3
3,696,896	+				-0.1
3,696,896	+				+0.7
3,696,896	+				+0.6
3,696,896	+				+2.3
3,696,896	+				-2.1
3,696,896	+				+1.6
3,696,896	+				+1.3
3,696,897	-				+0.4
3,696,897	-				-1.3
3,696,897	-				-0.3
3,696,897	-				-0.9
3,696,897	-				-1.5
3,696,897	-				-1.3
3,696,897	-				-1.2
3,696,897	-				+0.2
3,696,897	-				-0.3
3,696,897	-				-1.1
3,696,897	-				-1.4
3,696,897	-				+2.3
3,696,905	+				+0.3
3,696,905	+				+0.5
3,696,905	+				-2.2
3,696,906	-				-0.3
3,696,906	-				+1.2
3,696,906	-				+1.1
3,696,906	-				-0.0
3,696,906	-				-0.3
3,696,906	-				+1.9
3,696,906	-				-0.7
3,697,089	+				-2.7
3,697,089	+				+1.0
3,697,090	-				-1.2
3,697,236	+		AO356_16355	0.16	-0.9
3,697,236	+		AO356_16355	0.16	+2.1
3,697,236	+		AO356_16355	0.16	-0.5
3,697,236	+		AO356_16355	0.16	+0.6
3,697,237	-		AO356_16355	0.17	+0.0
3,697,318	+		AO356_16355	0.23	+2.1
3,697,319	-		AO356_16355	0.23	-1.4
3,697,329	+		AO356_16355	0.24	-1.3
3,697,329	+		AO356_16355	0.24	+2.2
3,697,329	+		AO356_16355	0.24	+0.8
3,697,360	+		AO356_16355	0.26	+1.6
3,697,361	-		AO356_16355	0.26	+1.2
3,697,375	+		AO356_16355	0.27	+0.7
3,697,375	+		AO356_16355	0.27	+1.9
3,697,375	+		AO356_16355	0.27	+0.1
3,697,375	+		AO356_16355	0.27	-2.1
3,697,375	+		AO356_16355	0.27	-0.1
3,697,375	+		AO356_16355	0.27	+2.4
3,697,375	+		AO356_16355	0.27	-0.8
3,697,376	-		AO356_16355	0.27	-1.4
3,697,376	-		AO356_16355	0.27	+3.2
3,697,376	-		AO356_16355	0.27	-0.9
3,697,376	-		AO356_16355	0.27	-1.5
3,697,376	-		AO356_16355	0.27	-1.4
3,697,376	-		AO356_16355	0.27	+1.0
3,697,376	-		AO356_16355	0.27	-0.2
3,697,376	-		AO356_16355	0.27	+1.3
3,697,376	-		AO356_16355	0.27	-2.2
3,697,376	-		AO356_16355	0.27	+0.8
3,697,376	-		AO356_16355	0.27	-0.4
3,697,376	-		AO356_16355	0.27	+0.0
3,697,376	-		AO356_16355	0.27	-0.1
3,697,692	+		AO356_16355	0.52	-0.8
3,697,750	-		AO356_16355	0.57	+0.7
3,697,750	-		AO356_16355	0.57	+2.4
3,697,781	+		AO356_16355	0.59	-1.1
3,697,781	+		AO356_16355	0.59	-1.2
3,697,781	+		AO356_16355	0.59	-0.6
3,697,781	+		AO356_16355	0.59	+1.8
3,697,782	-		AO356_16355	0.59	-0.6
3,697,782	-		AO356_16355	0.59	-0.4
3,697,782	-		AO356_16355	0.59	-0.7
3,697,920	+		AO356_16355	0.70	-1.6
3,697,992	+		AO356_16355	0.76	-0.9
3,697,993	-		AO356_16355	0.76	+2.4
3,698,031	+		AO356_16355	0.79	-0.5
3,698,031	+		AO356_16355	0.79	-1.8
3,698,041	+		AO356_16355	0.80	-0.3
3,698,041	+		AO356_16355	0.80	+0.4
3,698,042	-		AO356_16355	0.80	-0.2
3,698,080	-		AO356_16355	0.83	-3.7
3,698,106	+		AO356_16355	0.85	-0.1
3,698,106	+		AO356_16355	0.85	+1.1
3,698,106	+		AO356_16355	0.85	-1.5
3,698,107	-		AO356_16355	0.85	+0.1
3,698,107	-		AO356_16355	0.85	+0.3
3,698,107	-		AO356_16355	0.85	+0.8
3,698,107	-		AO356_16355	0.85	-0.5
3,698,298	+				-1.7
3,698,347	+				+1.1
3,698,440	-		AO356_16360	0.16	+2.2
3,698,460	+		AO356_16360	0.23	+2.0
3,698,460	+		AO356_16360	0.23	+1.7
3,698,461	-		AO356_16360	0.23	+1.2
3,698,461	-		AO356_16360	0.23	+0.3
3,698,533	+		AO356_16360	0.48	-1.1
3,698,533	+		AO356_16360	0.48	-1.8
3,698,533	+		AO356_16360	0.48	-0.2
3,698,533	+		AO356_16360	0.48	-1.2
3,698,533	+		AO356_16360	0.48	+2.2
3,698,534	-		AO356_16360	0.48	+0.4
3,698,534	-		AO356_16360	0.48	+1.4
3,698,623	+		AO356_16360	0.79	-0.6
3,698,623	+		AO356_16360	0.79	+1.1
3,698,623	+		AO356_16360	0.79	+0.6
3,698,623	+		AO356_16360	0.79	+0.9
3,698,624	-		AO356_16360	0.80	+1.0
3,698,624	-		AO356_16360	0.80	+0.6
3,698,624	-		AO356_16360	0.80	-1.9
3,698,624	-		AO356_16360	0.80	-2.6
3,698,624	-		AO356_16360	0.80	+0.7
3,698,624	-		AO356_16360	0.80	+0.2
3,698,624	-		AO356_16360	0.80	+0.8
3,698,635	+		AO356_16360	0.83	+2.2
3,698,635	+		AO356_16360	0.83	+0.7
3,698,635	+		AO356_16360	0.83	+0.4
3,698,635	+		AO356_16360	0.83	-1.5
3,698,635	+		AO356_16360	0.83	+0.4
3,698,635	+		AO356_16360	0.83	+2.1
3,698,636	-		AO356_16360	0.84	-0.1
3,698,636	-		AO356_16360	0.84	-0.4
3,698,636	-		AO356_16360	0.84	-0.8
3,698,909	+		AO356_16365	0.33	-0.8
3,698,909	+		AO356_16365	0.33	-0.1
3,698,909	+		AO356_16365	0.33	-1.5
3,698,910	-		AO356_16365	0.33	-0.9
3,698,940	+		AO356_16365	0.37	-0.2
3,698,940	+		AO356_16365	0.37	-2.2
3,698,940	+		AO356_16365	0.37	-1.9
3,698,940	+		AO356_16365	0.37	+1.2
3,698,940	+		AO356_16365	0.37	+0.3
3,698,940	+		AO356_16365	0.37	-1.9
3,698,940	+		AO356_16365	0.37	-2.4
3,698,940	+		AO356_16365	0.37	+2.0
3,698,941	-		AO356_16365	0.37	+0.6
3,698,941	-		AO356_16365	0.37	-0.2
3,698,994	+		AO356_16365	0.45	+1.6
3,698,995	-		AO356_16365	0.45	+1.6
3,698,995	-		AO356_16365	0.45	+0.8
3,699,034	+		AO356_16365	0.51	+0.7
3,699,034	+		AO356_16365	0.51	-2.4
3,699,034	+		AO356_16365	0.51	-1.5
3,699,035	-		AO356_16365	0.51	+0.5
3,699,035	-		AO356_16365	0.51	+1.5
3,699,035	-		AO356_16365	0.51	+0.1
3,699,035	-		AO356_16365	0.51	-2.1
3,699,035	-		AO356_16365	0.51	+0.9
3,699,042	+		AO356_16365	0.52	-0.9
3,699,161	-		AO356_16365	0.69	-0.9
3,699,181	+		AO356_16365	0.72	+1.3
3,699,181	+		AO356_16365	0.72	-1.6
3,699,181	+		AO356_16365	0.72	+1.2
3,699,181	+		AO356_16365	0.72	+1.1
3,699,181	+		AO356_16365	0.72	+0.0
3,699,181	+		AO356_16365	0.72	+1.1
3,699,181	+		AO356_16365	0.72	-0.3
3,699,181	+		AO356_16365	0.72	+0.9
3,699,181	+		AO356_16365	0.72	+0.7
3,699,181	+		AO356_16365	0.72	+2.3
3,699,181	+		AO356_16365	0.72	+0.5
3,699,181	+		AO356_16365	0.72	-2.6
3,699,182	-		AO356_16365	0.72	+0.1
3,699,182	-		AO356_16365	0.72	-2.4
3,699,182	-		AO356_16365	0.72	-2.4
3,699,182	-		AO356_16365	0.72	-0.9
3,699,182	-		AO356_16365	0.72	+0.6
3,699,182	-		AO356_16365	0.72	-1.5
3,699,182	-		AO356_16365	0.72	-1.5
3,699,182	-		AO356_16365	0.72	+2.3
3,699,182	-		AO356_16365	0.72	+0.9
3,699,182	-		AO356_16365	0.72	-1.2
3,699,182	-		AO356_16365	0.72	+0.1
3,699,182	-		AO356_16365	0.72	+2.3
3,699,263	+		AO356_16365	0.84	+0.8
3,699,263	+		AO356_16365	0.84	+0.4
3,699,263	+		AO356_16365	0.84	+1.5
3,699,263	+		AO356_16365	0.84	-1.3
3,699,263	+		AO356_16365	0.84	+1.2
3,699,263	+		AO356_16365	0.84	+0.7
3,699,263	+		AO356_16365	0.84	-0.6
3,699,263	+		AO356_16365	0.84	+0.2
3,699,263	+		AO356_16365	0.84	+0.6
3,699,264	-		AO356_16365	0.84	-2.0
3,699,264	-		AO356_16365	0.84	-2.1
3,699,264	-		AO356_16365	0.84	-0.5
3,699,264	-		AO356_16365	0.84	+0.7
3,699,264	-		AO356_16365	0.84	+0.5
3,699,264	-		AO356_16365	0.84	-1.0
3,699,264	-		AO356_16365	0.84	+0.8