Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15660

Experiment: Nitrate reduction with yeast extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction with yeast extract
3,543,999	-				-2.6
3,543,999	-				-0.5
3,544,116	+		AO356_15655	0.23	+1.2
3,544,116	+		AO356_15655	0.23	+2.3
3,544,116	+		AO356_15655	0.23	-0.0
3,544,116	+		AO356_15655	0.23	+1.0
3,544,116	+		AO356_15655	0.23	-0.5
3,544,117	-		AO356_15655	0.23	+1.0
3,544,117	-		AO356_15655	0.23	+0.4
3,544,144	+		AO356_15655	0.27	+1.4
3,544,144	+		AO356_15655	0.27	-0.1
3,544,144	+		AO356_15655	0.27	+0.1
3,544,144	+		AO356_15655	0.27	-0.3
3,544,145	-		AO356_15655	0.27	+0.6
3,544,145	-		AO356_15655	0.27	-0.5
3,544,145	-		AO356_15655	0.27	+1.6
3,544,145	-		AO356_15655	0.27	+0.9
3,544,145	-		AO356_15655	0.27	-1.0
3,544,158	+		AO356_15655	0.29	-0.3
3,544,159	-		AO356_15655	0.29	+0.1
3,544,159	-		AO356_15655	0.29	+0.7
3,544,159	-		AO356_15655	0.29	-0.0
3,544,237	+		AO356_15655	0.40	+2.3
3,544,238	-		AO356_15655	0.40	+2.2
3,544,238	-		AO356_15655	0.40	-0.1
3,544,238	-		AO356_15655	0.40	-1.4
3,544,250	+		AO356_15655	0.41	-0.3
3,544,333	+		AO356_15655	0.53	+0.6
3,544,333	+		AO356_15655	0.53	+0.6
3,544,334	-		AO356_15655	0.53	-1.0
3,544,334	-		AO356_15655	0.53	-0.2
3,544,352	+		AO356_15655	0.56	-0.2
3,544,352	+		AO356_15655	0.56	-1.1
3,544,353	-		AO356_15655	0.56	+2.5
3,544,434	+		AO356_15655	0.67	+1.1
3,544,438	-		AO356_15655	0.68	-0.2
3,544,456	+		AO356_15655	0.70	-0.0
3,544,495	+		AO356_15655	0.76	+0.0
3,544,495	+		AO356_15655	0.76	-0.8
3,544,496	-		AO356_15655	0.76	+0.3
3,544,496	-		AO356_15655	0.76	-0.2
3,544,499	+		AO356_15655	0.76	-2.2
3,544,499	+		AO356_15655	0.76	+0.9
3,544,499	+		AO356_15655	0.76	+0.5
3,544,499	+		AO356_15655	0.76	+0.3
3,544,500	-		AO356_15655	0.76	+0.7
3,544,543	+		AO356_15655	0.82	+1.8
3,544,544	-		AO356_15655	0.83	-1.3
3,544,544	-		AO356_15655	0.83	-1.3
3,544,561	+		AO356_15655	0.85	-0.4
3,544,632	+				+0.0
3,544,632	+				+2.8
3,544,632	+				+1.2
3,544,632	+				+1.9
3,544,633	-				+0.3
3,544,633	-				-0.1
3,544,645	-				-0.3
3,544,645	-				+0.5
3,544,723	-				+3.7
3,544,727	+				-0.3
3,544,782	-				+1.2
3,544,785	+				+2.6
3,544,786	-				-1.3
3,544,794	-				+0.0
3,544,817	-				+0.3
3,544,837	-				-0.1
3,544,873	+				-0.5
3,544,880	-				-0.2
3,544,947	+				+0.2
3,545,030	+				+0.7
3,545,030	+				-1.4
3,545,030	+				+0.1
3,545,030	+				+0.8
3,545,031	-				+0.9
3,545,031	-				-1.6
3,545,031	-				+0.5
3,545,036	-				-0.6
3,545,036	-				+0.1
3,545,131	-		AO356_15660	0.22	-2.0
3,545,397	+		AO356_15660	0.56	+0.5
3,545,397	+		AO356_15660	0.56	+0.2
3,545,397	+		AO356_15660	0.56	-0.7
3,545,397	+		AO356_15660	0.56	+0.1
3,545,397	+		AO356_15660	0.56	+1.7
3,545,397	+		AO356_15660	0.56	-0.6
3,545,398	-		AO356_15660	0.56	+2.0
3,545,398	-		AO356_15660	0.56	+3.2
3,545,398	-		AO356_15660	0.56	-2.0
3,545,398	-		AO356_15660	0.56	-2.2
3,545,398	-		AO356_15660	0.56	+1.3
3,545,427	+		AO356_15660	0.60	-0.7
3,545,428	-		AO356_15660	0.60	+1.7
3,545,463	+		AO356_15660	0.65	-0.5
3,545,463	+		AO356_15660	0.65	+0.2
3,545,463	+		AO356_15660	0.65	+1.1
3,545,546	+		AO356_15660	0.76	+0.6
3,545,547	-		AO356_15660	0.76	-0.2
3,545,572	+		AO356_15660	0.79	+0.6
3,545,572	+		AO356_15660	0.79	+1.2
3,545,573	-		AO356_15660	0.79	-0.5
3,545,573	-		AO356_15660	0.79	+2.0
3,545,591	-		AO356_15660	0.81	+1.4
3,545,727	+				+1.7
3,545,727	+				+1.1
3,545,727	+				+1.0
3,545,727	+				-0.3
3,545,728	-				+0.8
3,545,728	-				+0.0
3,545,733	+				-2.1
3,545,733	+				+1.5
3,545,734	-				-1.4
3,545,734	-				+0.8
3,545,923	+		AO356_15665	0.45	+0.8
3,545,923	+		AO356_15665	0.45	-1.2
3,545,928	+		AO356_15665	0.46	-1.2
3,546,141	-				+0.9
3,546,156	+				-0.9
3,546,156	+				-1.6
3,546,156	+				+0.3
3,546,157	-				-1.8
3,546,157	-				+0.2
3,546,157	-				-1.8
3,546,157	-				-0.2
3,546,165	+				+1.3
3,546,165	+				-2.3
3,546,166	-				-2.1
3,546,166	-				-1.8
3,546,166	-				-0.1
3,546,166	-				+0.8
3,546,166	-				+1.5
3,546,191	+				-0.0
3,546,191	+				-0.5
3,546,191	+				+1.3
3,546,191	+				-0.1
3,546,192	-				+0.3
3,546,228	+				-1.2
3,546,228	+				-1.0
3,546,229	-				-1.1
3,546,229	-				-2.0
3,546,229	-				-0.7
3,546,229	-				-0.6
3,546,229	-				+0.3
3,546,229	-				-0.1
3,546,243	-				-0.1
3,546,243	-				-0.1
3,546,319	+				+0.7
3,546,319	+				+0.8
3,546,319	+				-0.9
3,546,319	+				-2.0
3,546,320	-				-0.8
3,546,320	-				-1.2
3,546,320	-				-1.8
3,546,320	-				-0.5
3,546,320	-				+1.0
3,546,322	-				-0.5
3,546,355	+				-0.5
3,546,355	+				-1.3
3,546,355	+				-0.0
3,546,356	-				+1.3
3,546,356	-				-1.2
3,546,356	-				+0.5
3,546,356	-				+0.4
3,546,359	+				-1.6
3,546,360	-				+1.7
3,546,381	+				-1.8
3,546,381	+				+0.5
3,546,382	-				-1.7
3,546,412	+				+0.6
3,546,412	+				-0.2
3,546,412	+				+1.6
3,546,412	+				+1.9
3,546,412	+				-0.4
3,546,413	-				+0.7
3,546,413	-				+1.0
3,546,413	-				-1.1
3,546,413	-				-0.8
3,546,414	+				+0.2
3,546,414	+				+0.9
3,546,414	+				-1.1
3,546,414	+				-0.7
3,546,415	-				+2.2
3,546,415	-				+0.5
3,546,415	-				-0.1
3,546,415	-				-1.3
3,546,434	+				+2.3
3,546,434	+				+2.1
3,546,435	-				-1.9
3,546,435	-				-0.2
3,546,435	-				+0.9
3,546,462	+				+0.5
3,546,462	+				+1.6
3,546,463	-				-0.4
3,546,463	-				-1.0
3,546,463	-				-3.1
3,546,463	-				-0.1
3,546,463	-				+0.2
3,546,505	+				-1.6
3,546,505	+				+0.6
3,546,505	+				-2.6
3,546,505	+				-1.2
3,546,505	+				-1.0
3,546,505	+				+0.7
3,546,505	+				-2.2
3,546,505	+				-1.2
3,546,505	+				+0.6
3,546,505	+				-1.5
3,546,506	-				-0.9
3,546,506	-				-2.2
3,546,506	-				+0.3
3,546,506	-				-0.3
3,546,506	-				-1.1
3,546,506	-				+2.1
3,546,506	-				+3.6
3,546,687	-		AO356_15670	0.16	-0.9