Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13640

Experiment: Nitrate reduction with yeast extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction with yeast extract
3,093,161	+				+1.2
3,093,162	-				-1.0
3,093,338	+				+2.7
3,093,338	+				-1.5
3,093,338	+				+1.0
3,093,339	-				+0.8
3,093,339	-				+1.1
3,093,339	-				-0.2
3,093,492	+		AO356_13635	0.25	-1.3
3,093,492	+		AO356_13635	0.25	-1.5
3,093,492	+		AO356_13635	0.25	-0.2
3,093,493	-		AO356_13635	0.25	-1.5
3,093,493	-		AO356_13635	0.25	+1.1
3,093,493	-		AO356_13635	0.25	+0.7
3,093,493	-		AO356_13635	0.25	-2.0
3,093,493	-		AO356_13635	0.25	-0.3
3,093,498	+		AO356_13635	0.26	+0.7
3,093,498	+		AO356_13635	0.26	+2.3
3,093,499	-		AO356_13635	0.26	+1.6
3,093,543	+		AO356_13635	0.31	-1.9
3,093,543	+		AO356_13635	0.31	-1.7
3,093,544	-		AO356_13635	0.31	+0.2
3,093,593	+		AO356_13635	0.37	+1.8
3,093,636	-		AO356_13635	0.42	-0.2
3,093,750	+		AO356_13635	0.56	+1.5
3,093,750	+		AO356_13635	0.56	+0.4
3,093,750	+		AO356_13635	0.56	+1.0
3,093,750	+		AO356_13635	0.56	-0.7
3,093,750	+		AO356_13635	0.56	+1.0
3,093,751	-		AO356_13635	0.56	-1.1
3,093,751	-		AO356_13635	0.56	-1.3
3,093,751	-		AO356_13635	0.56	+0.2
3,093,751	-		AO356_13635	0.56	-0.9
3,093,751	-		AO356_13635	0.56	-0.4
3,093,801	+		AO356_13635	0.62	+1.6
3,093,801	+		AO356_13635	0.62	-2.1
3,093,802	-		AO356_13635	0.62	+0.2
3,093,802	-		AO356_13635	0.62	-0.2
3,093,802	-		AO356_13635	0.62	+0.0
3,093,928	+		AO356_13635	0.77	+0.8
3,093,928	+		AO356_13635	0.77	-0.1
3,093,928	+		AO356_13635	0.77	+0.1
3,093,929	-		AO356_13635	0.77	-0.4
3,093,929	-		AO356_13635	0.77	-0.4
3,093,929	-		AO356_13635	0.77	-0.7
3,093,939	+		AO356_13635	0.78	+1.6
3,093,939	+		AO356_13635	0.78	+1.8
3,093,940	-		AO356_13635	0.79	+0.6
3,093,940	-		AO356_13635	0.79	+1.4
3,094,039	-				+1.2
3,094,072	+				+2.3
3,094,072	+				-0.6
3,094,131	+				+1.9
3,094,133	+				-2.2
3,094,133	+				+0.1
3,094,133	+				-0.9
3,094,133	+				+0.3
3,094,134	-				+1.3
3,094,134	-				-0.9
3,094,134	-				+0.8
3,094,134	-				-3.1
3,094,134	-				-1.5
3,094,134	-				-2.2
3,094,156	+				-0.3
3,094,157	-				+2.0
3,094,202	+		AO356_13640	0.12	-1.2
3,094,202	+		AO356_13640	0.12	+0.5
3,094,202	+		AO356_13640	0.12	+1.9
3,094,202	+		AO356_13640	0.12	-0.5
3,094,203	-		AO356_13640	0.12	-2.4
3,094,203	-		AO356_13640	0.12	-1.5
3,094,203	-		AO356_13640	0.12	+0.1
3,094,203	-		AO356_13640	0.12	+2.3
3,094,203	-		AO356_13640	0.12	+0.7
3,094,203	-		AO356_13640	0.12	-0.6
3,094,203	-		AO356_13640	0.12	-0.7
3,094,203	-		AO356_13640	0.12	-0.1
3,094,203	-		AO356_13640	0.12	+1.5
3,094,238	+		AO356_13640	0.21	-1.9
3,094,239	-		AO356_13640	0.21	-0.3
3,094,239	-		AO356_13640	0.21	+2.0
3,094,442	+		AO356_13640	0.74	+0.7
3,094,442	+		AO356_13640	0.74	-0.8
3,094,442	+		AO356_13640	0.74	-1.5
3,094,442	+		AO356_13640	0.74	-1.4
3,094,442	+		AO356_13640	0.74	+1.3
3,094,442	+		AO356_13640	0.74	-0.0
3,094,443	-		AO356_13640	0.74	+1.3
3,094,443	-		AO356_13640	0.74	+1.3
3,094,443	-		AO356_13640	0.74	-2.1
3,094,443	-		AO356_13640	0.74	+0.2
3,094,443	-		AO356_13640	0.74	-0.4
3,094,443	-		AO356_13640	0.74	+1.5
3,094,454	+		AO356_13640	0.77	+0.5
3,094,454	+		AO356_13640	0.77	+0.5
3,094,454	+		AO356_13640	0.77	+0.0
3,094,454	+		AO356_13640	0.77	+0.4
3,094,455	-		AO356_13640	0.78	-0.5
3,094,569	-				+0.6
3,094,578	-				+0.3
3,094,608	+				+1.2
3,094,609	-				+1.1
3,094,623	+				+0.1
3,094,623	+				+0.0
3,094,623	+				+1.1
3,094,623	+				-1.1
3,094,623	+				+0.5
3,094,623	+				-0.8
3,094,623	+				+0.5
3,094,623	+				-0.2
3,094,623	+				-0.2
3,094,623	+				-0.3
3,094,623	+				+1.2
3,094,623	+				+1.9
3,094,623	+				-0.9
3,094,623	+				+0.8
3,094,623	+				-0.9
3,094,623	+				-0.8
3,094,623	+				+1.2
3,094,624	-				-1.0
3,094,624	-				-0.7
3,094,624	-				-0.3
3,094,624	-				+0.5
3,094,624	-				+1.7
3,094,624	-				+1.5
3,094,624	-				+0.1
3,094,624	-				-1.3
3,094,624	-				-0.7
3,094,624	-				+0.4
3,094,624	-				-2.5
3,094,624	-				-2.0
3,094,624	-				+1.5
3,094,624	-				+0.5
3,094,624	-				-1.2
3,094,624	-				+0.3
3,094,624	-				+1.4
3,094,730	+				-0.3
3,094,730	+				-0.8
3,094,730	+				+1.4
3,094,730	+				-1.2
3,094,731	-				+0.4
3,094,731	-				-2.8
3,094,994	+		AO356_13645	0.25	+0.7
3,094,994	+		AO356_13645	0.25	+0.3
3,094,994	+		AO356_13645	0.25	+1.8
3,094,994	+		AO356_13645	0.25	+0.1
3,094,994	+		AO356_13645	0.25	+0.2
3,094,994	+		AO356_13645	0.25	+0.5
3,094,995	-		AO356_13645	0.25	-2.1
3,094,995	-		AO356_13645	0.25	+0.4
3,094,995	-		AO356_13645	0.25	-1.0
3,094,995	-		AO356_13645	0.25	-0.3
3,095,052	+		AO356_13645	0.30	-1.1
3,095,052	+		AO356_13645	0.30	+1.8
3,095,052	+		AO356_13645	0.30	+0.6
3,095,052	+		AO356_13645	0.30	+0.4
3,095,052	+		AO356_13645	0.30	-1.8
3,095,052	+		AO356_13645	0.30	+0.3
3,095,052	+		AO356_13645	0.30	+1.2
3,095,052	+		AO356_13645	0.30	-0.6
3,095,052	+		AO356_13645	0.30	+0.4
3,095,052	+		AO356_13645	0.30	+0.5
3,095,052	+		AO356_13645	0.30	-0.7
3,095,053	-		AO356_13645	0.30	-1.4
3,095,053	-		AO356_13645	0.30	+0.8
3,095,053	-		AO356_13645	0.30	-2.5
3,095,412	+		AO356_13645	0.60	-0.9
3,095,412	+		AO356_13645	0.60	+1.3
3,095,413	-		AO356_13645	0.61	+1.3
3,095,413	-		AO356_13645	0.61	+0.5
3,095,413	-		AO356_13645	0.61	-1.2
3,095,450	+		AO356_13645	0.64	-1.4
3,095,457	+		AO356_13645	0.64	-1.4
3,095,457	+		AO356_13645	0.64	+0.9
3,095,457	+		AO356_13645	0.64	+0.5
3,095,458	-		AO356_13645	0.64	+0.3
3,095,458	-		AO356_13645	0.64	-1.3
3,095,458	-		AO356_13645	0.64	+0.1
3,095,468	-		AO356_13645	0.65	-2.2
3,095,514	+		AO356_13645	0.69	-2.6
3,095,514	+		AO356_13645	0.69	-0.2
3,095,515	-		AO356_13645	0.69	-0.2
3,095,515	-		AO356_13645	0.69	-0.4
3,095,515	-		AO356_13645	0.69	-0.2
3,095,515	-		AO356_13645	0.69	-1.5
3,095,518	-		AO356_13645	0.69	-1.4
3,095,524	+		AO356_13645	0.70	-0.1