Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13630

Experiment: Nitrate reduction with yeast extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction with yeast extract
3,090,943	+		AO356_13625	0.73	+0.8
3,090,943	+		AO356_13625	0.73	-0.1
3,090,943	+		AO356_13625	0.73	-0.4
3,090,943	+		AO356_13625	0.73	-2.4
3,090,943	+		AO356_13625	0.73	+0.4
3,090,943	+		AO356_13625	0.73	-0.5
3,090,944	-		AO356_13625	0.74	+0.6
3,090,944	-		AO356_13625	0.74	+0.2
3,090,944	-		AO356_13625	0.74	-0.5
3,090,944	-		AO356_13625	0.74	-0.5
3,090,944	-		AO356_13625	0.74	+0.7
3,090,944	-		AO356_13625	0.74	-2.0
3,090,944	-		AO356_13625	0.74	+0.4
3,090,944	-		AO356_13625	0.74	-1.1
3,090,944	-		AO356_13625	0.74	+0.1
3,090,944	-		AO356_13625	0.74	+1.3
3,090,944	-		AO356_13625	0.74	-1.3
3,090,944	-		AO356_13625	0.74	+1.5
3,091,175	+		AO356_13625	0.86	-2.1
3,091,175	+		AO356_13625	0.86	+2.5
3,091,175	+		AO356_13625	0.86	-2.0
3,091,176	-		AO356_13625	0.87	-1.1
3,091,176	-		AO356_13625	0.87	+1.2
3,091,226	+		AO356_13625	0.89	+0.5
3,091,307	+				+0.9
3,091,307	+				+0.3
3,091,307	+				+0.7
3,091,308	-				+1.4
3,091,354	+				+0.8
3,091,354	+				+1.8
3,091,355	-				+2.3
3,091,415	+				+1.3
3,091,415	+				-2.5
3,091,558	+				+0.9
3,091,558	+				-1.3
3,091,558	+				-1.9
3,091,558	+				-1.8
3,091,559	-				-2.8
3,091,559	-				+2.2
3,091,559	-				+0.7
3,091,559	-				-1.3
3,091,559	-				-0.0
3,091,572	+				-2.4
3,091,572	+				+0.8
3,091,572	+				-0.2
3,091,572	+				+1.3
3,091,573	-				+1.7
3,091,573	-				+0.7
3,091,620	+				+1.4
3,091,620	+				+0.8
3,091,620	+				-2.2
3,091,620	+				-1.7
3,091,620	+				-1.7
3,091,621	-				+0.1
3,091,621	-				-1.9
3,091,621	-				-2.4
3,091,638	+				-0.7
3,091,638	+				+2.7
3,091,638	+				-1.4
3,091,638	+				-0.8
3,091,639	-				+1.2
3,091,740	+				+0.0
3,091,741	-				-0.9
3,091,766	+				-1.5
3,091,766	+				-0.6
3,091,766	+				+2.1
3,091,773	+				+0.7
3,091,773	+				-0.2
3,091,774	-				-0.3
3,091,810	+				+2.2
3,091,810	+				+1.5
3,091,810	+				+2.2
3,091,810	+				-0.3
3,091,810	+				+0.3
3,091,810	+				-0.2
3,091,810	+				-0.6
3,091,811	-				+3.1
3,091,811	-				+2.0
3,091,811	-				-1.8
3,091,863	-				+1.6
3,091,917	+				-1.9
3,091,917	+				-0.9
3,091,918	-				+1.8
3,092,154	+		AO356_13630	0.28	+1.4
3,092,155	-		AO356_13630	0.29	+0.9
3,092,323	+		AO356_13630	0.43	-3.0
3,092,323	+		AO356_13630	0.43	-0.6
3,092,323	+		AO356_13630	0.43	+2.8
3,092,323	+		AO356_13630	0.43	+2.3
3,092,323	+		AO356_13630	0.43	-0.7
3,092,324	-		AO356_13630	0.43	+0.1
3,092,324	-		AO356_13630	0.43	-1.3
3,092,324	-		AO356_13630	0.43	+3.3
3,092,324	-		AO356_13630	0.43	-0.4
3,092,324	-		AO356_13630	0.43	-0.1
3,092,331	+		AO356_13630	0.44	+0.9
3,092,331	+		AO356_13630	0.44	+2.7
3,092,332	-		AO356_13630	0.44	+2.1
3,092,332	-		AO356_13630	0.44	-1.5
3,092,332	-		AO356_13630	0.44	+1.4
3,092,332	-		AO356_13630	0.44	+1.2
3,092,332	-		AO356_13630	0.44	+3.9
3,092,332	-		AO356_13630	0.44	+1.4
3,092,358	+		AO356_13630	0.46	+1.5
3,092,358	+		AO356_13630	0.46	+1.9
3,092,358	+		AO356_13630	0.46	-2.5
3,092,359	-		AO356_13630	0.46	-1.8
3,092,359	-		AO356_13630	0.46	-1.3
3,092,527	+		AO356_13630	0.61	-0.1
3,092,527	+		AO356_13630	0.61	-0.3
3,092,527	+		AO356_13630	0.61	+0.1
3,092,713	+		AO356_13630	0.77	-0.3
3,092,713	+		AO356_13630	0.77	-0.1
3,092,713	+		AO356_13630	0.77	+1.7
3,092,713	+		AO356_13630	0.77	+0.6
3,092,714	-		AO356_13630	0.77	-1.9
3,092,714	-		AO356_13630	0.77	-0.7
3,092,714	-		AO356_13630	0.77	+1.6
3,093,003	+				-0.8
3,093,003	+				+0.1
3,093,004	-				+1.2
3,093,004	-				+2.1
3,093,004	-				+0.6
3,093,027	+				+1.4
3,093,027	+				+1.0
3,093,027	+				-0.6
3,093,027	+				+0.9
3,093,027	+				-1.3
3,093,027	+				+0.8
3,093,027	+				-1.3
3,093,027	+				+1.5
3,093,027	+				+0.3
3,093,027	+				-0.3
3,093,028	-				+2.4
3,093,028	-				+1.2
3,093,028	-				+0.7
3,093,028	-				-2.7
3,093,028	-				+2.4
3,093,028	-				+1.5
3,093,028	-				-1.4
3,093,028	-				-0.9
3,093,028	-				+0.1
3,093,073	+				-1.5
3,093,073	+				+0.7
3,093,074	-				+0.6
3,093,074	-				-0.4
3,093,087	+				+1.2
3,093,088	-				-1.3
3,093,088	-				+0.2
3,093,122	+				-0.3
3,093,122	+				-1.2
3,093,122	+				-1.1
3,093,122	+				+1.6
3,093,122	+				+1.7
3,093,123	-				+1.5
3,093,124	+				+0.2
3,093,125	-				+1.4
3,093,161	+				+1.2
3,093,162	-				-1.0
3,093,338	+				+2.7
3,093,338	+				-1.5
3,093,338	+				+1.0
3,093,339	-				+0.8
3,093,339	-				+1.1
3,093,339	-				-0.2
3,093,492	+		AO356_13635	0.25	-1.3
3,093,492	+		AO356_13635	0.25	-1.5
3,093,492	+		AO356_13635	0.25	-0.2
3,093,493	-		AO356_13635	0.25	-1.5
3,093,493	-		AO356_13635	0.25	+1.1
3,093,493	-		AO356_13635	0.25	+0.7
3,093,493	-		AO356_13635	0.25	-2.0
3,093,493	-		AO356_13635	0.25	-0.3
3,093,498	+		AO356_13635	0.26	+0.7
3,093,498	+		AO356_13635	0.26	+2.3
3,093,499	-		AO356_13635	0.26	+1.6
3,093,543	+		AO356_13635	0.31	-1.9
3,093,543	+		AO356_13635	0.31	-1.7
3,093,544	-		AO356_13635	0.31	+0.2
3,093,593	+		AO356_13635	0.37	+1.8
3,093,636	-		AO356_13635	0.42	-0.2
3,093,750	+		AO356_13635	0.56	+1.5
3,093,750	+		AO356_13635	0.56	+0.4
3,093,750	+		AO356_13635	0.56	+1.0
3,093,750	+		AO356_13635	0.56	-0.7
3,093,750	+		AO356_13635	0.56	+1.0
3,093,751	-		AO356_13635	0.56	-1.1
3,093,751	-		AO356_13635	0.56	-1.3
3,093,751	-		AO356_13635	0.56	+0.2
3,093,751	-		AO356_13635	0.56	-0.9
3,093,751	-		AO356_13635	0.56	-0.4
3,093,801	+		AO356_13635	0.62	+1.6
3,093,801	+		AO356_13635	0.62	-2.1
3,093,802	-		AO356_13635	0.62	+0.2
3,093,802	-		AO356_13635	0.62	-0.2
3,093,802	-		AO356_13635	0.62	+0.0
3,093,928	+		AO356_13635	0.77	+0.8
3,093,928	+		AO356_13635	0.77	-0.1
3,093,928	+		AO356_13635	0.77	+0.1
3,093,929	-		AO356_13635	0.77	-0.4
3,093,929	-		AO356_13635	0.77	-0.4
3,093,929	-		AO356_13635	0.77	-0.7
3,093,939	+		AO356_13635	0.78	+1.6
3,093,939	+		AO356_13635	0.78	+1.8
3,093,940	-		AO356_13635	0.79	+0.6
3,093,940	-		AO356_13635	0.79	+1.4