Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12565

Experiment: Nitrate reduction with yeast extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction with yeast extract
2,864,553	+				+1.0
2,864,553	+				+0.8
2,864,553	+				+0.6
2,864,554	-				-1.0
2,864,554	-				-0.2
2,864,558	+				+0.6
2,864,559	-				+1.0
2,864,637	+				+1.9
2,865,376	-				+0.7
2,865,508	+		AO356_12565	0.39	-0.8
2,865,508	+		AO356_12565	0.39	+2.7
2,865,508	+		AO356_12565	0.39	+0.4
2,865,508	+		AO356_12565	0.39	-1.3
2,865,508	+		AO356_12565	0.39	+0.9
2,865,509	-		AO356_12565	0.39	+1.5
2,865,509	-		AO356_12565	0.39	+2.9
2,865,509	-		AO356_12565	0.39	+0.2
2,865,598	+		AO356_12565	0.80	+1.5
2,865,598	+		AO356_12565	0.80	-1.9
2,865,598	+		AO356_12565	0.80	-1.1
2,865,598	+		AO356_12565	0.80	+0.9
2,865,598	+		AO356_12565	0.80	-2.6
2,865,599	-		AO356_12565	0.80	+0.2
2,865,599	-		AO356_12565	0.80	+0.3
2,865,599	-		AO356_12565	0.80	+1.9
2,865,599	-		AO356_12565	0.80	+0.2
2,865,599	-		AO356_12565	0.80	-2.3
2,865,630	+				-2.7
2,865,630	+				-1.7
2,865,659	+				+0.1
2,865,659	+				+0.6
2,865,659	+				-1.7
2,865,659	+				+0.4
2,865,659	+				-0.0
2,865,659	+				+0.0
2,865,659	+				-2.0
2,865,659	+				-1.6
2,865,660	-				+0.6
2,865,660	-				-0.4
2,865,660	-				+0.5
2,865,660	-				-0.1
2,865,660	-				+2.3
2,865,660	-				+0.4
2,865,660	-				+0.4
2,865,660	-				+0.4
2,865,660	-				+1.2
2,865,660	-				-1.2
2,865,663	+				+0.5
2,865,663	+				+0.1
2,865,663	+				-1.5
2,865,663	+				+1.1
2,865,663	+				-2.5
2,865,664	-				-0.9
2,865,726	+				-0.4
2,865,726	+				+1.4
2,865,726	+				+0.7
2,865,726	+				-0.2
2,865,727	-				-1.0
2,865,727	-				+2.1
2,865,754	+				+0.7
2,865,754	+				-1.2
2,865,754	+				+1.9
2,865,754	+				+1.2
2,865,755	-				-1.3
2,865,755	-				+0.2
2,865,755	-				-0.9
2,865,755	-				+2.2
2,865,755	-				-0.3
2,865,755	-				+0.6
2,865,755	-				+0.8
2,865,784	-				-0.7
2,865,834	+				-0.5
2,865,834	+				+2.8
2,865,834	+				-0.8
2,865,834	+				+0.9
2,865,834	+				+0.5
2,865,835	-				-1.3
2,865,851	+				-0.8
2,865,851	+				+1.3
2,865,851	+				-1.2
2,865,851	+				+1.0
2,865,851	+				+2.1
2,865,970	+		AO356_12570	0.47	-0.7
2,865,970	+		AO356_12570	0.47	-3.0
2,865,970	+		AO356_12570	0.47	-1.9
2,865,971	-		AO356_12570	0.48	+1.5
2,865,971	-		AO356_12570	0.48	-1.5
2,865,971	-		AO356_12570	0.48	-1.0
2,865,971	-		AO356_12570	0.48	-1.3
2,866,004	+		AO356_12570	0.64	-0.6
2,866,004	+		AO356_12570	0.64	+1.3
2,866,004	+		AO356_12570	0.64	-0.2
2,866,004	+		AO356_12570	0.64	+0.5
2,866,004	+		AO356_12570	0.64	-1.3
2,866,004	+		AO356_12570	0.64	-0.6
2,866,005	-		AO356_12570	0.64	+0.3
2,866,005	-		AO356_12570	0.64	-1.9
2,866,005	-		AO356_12570	0.64	-1.4
2,866,005	-		AO356_12570	0.64	+1.1
2,866,005	-		AO356_12570	0.64	+0.8
2,866,005	-		AO356_12570	0.64	+0.8
2,866,005	-		AO356_12570	0.64	+1.3
2,866,005	-		AO356_12570	0.64	-1.8
2,866,005	-		AO356_12570	0.64	-0.3
2,866,005	-		AO356_12570	0.64	-1.7
2,866,005	-		AO356_12570	0.64	+3.9
2,866,021	+		AO356_12570	0.72	-2.2
2,866,021	+		AO356_12570	0.72	+1.4
2,866,021	+		AO356_12570	0.72	-0.4
2,866,021	+		AO356_12570	0.72	-2.6
2,866,021	+		AO356_12570	0.72	-1.2
2,866,021	+		AO356_12570	0.72	-1.7
2,866,022	-		AO356_12570	0.73	-2.2
2,866,022	-		AO356_12570	0.73	-0.7
2,866,022	-		AO356_12570	0.73	-1.5
2,866,022	-		AO356_12570	0.73	-0.5
2,866,022	-		AO356_12570	0.73	-1.2
2,866,022	-		AO356_12570	0.73	-0.7
2,866,022	-		AO356_12570	0.73	-0.6
2,866,022	-		AO356_12570	0.73	+2.4
2,866,022	-		AO356_12570	0.73	-1.3
2,866,022	-		AO356_12570	0.73	-0.7
2,866,022	-		AO356_12570	0.73	-0.8
2,866,022	-		AO356_12570	0.73	+0.8
2,866,022	-		AO356_12570	0.73	+0.5
2,866,022	-		AO356_12570	0.73	+1.0
2,866,022	-		AO356_12570	0.73	+0.2
2,866,025	+		AO356_12570	0.74	-1.5
2,866,025	+		AO356_12570	0.74	-1.3
2,866,025	+		AO356_12570	0.74	-1.0
2,866,025	+		AO356_12570	0.74	+2.7
2,866,025	+		AO356_12570	0.74	-0.0
2,866,025	+		AO356_12570	0.74	+0.9
2,866,025	+		AO356_12570	0.74	+0.6
2,866,025	+		AO356_12570	0.74	+1.0
2,866,025	+		AO356_12570	0.74	+1.4
2,866,025	+		AO356_12570	0.74	-0.2
2,866,025	+		AO356_12570	0.74	-1.6
2,866,025	+		AO356_12570	0.74	+1.1
2,866,025	+		AO356_12570	0.74	-1.8
2,866,025	+		AO356_12570	0.74	-1.5
2,866,025	+		AO356_12570	0.74	-0.2
2,866,025	+		AO356_12570	0.74	+2.1
2,866,025	+		AO356_12570	0.74	-0.5
2,866,025	+		AO356_12570	0.74	+1.3
2,866,025	+		AO356_12570	0.74	-2.2
2,866,025	+		AO356_12570	0.74	-2.1
2,866,025	+		AO356_12570	0.74	+0.2
2,866,025	+		AO356_12570	0.74	+0.3
2,866,025	+		AO356_12570	0.74	-0.4
2,866,025	+		AO356_12570	0.74	+0.8
2,866,025	+		AO356_12570	0.74	+0.1
2,866,025	+		AO356_12570	0.74	+0.6
2,866,025	+		AO356_12570	0.74	+1.8
2,866,025	+		AO356_12570	0.74	+0.7
2,866,026	-		AO356_12570	0.75	+0.7
2,866,026	-		AO356_12570	0.75	-1.3
2,866,026	-		AO356_12570	0.75	-3.1
2,866,026	-		AO356_12570	0.75	-0.6
2,866,026	-		AO356_12570	0.75	+1.3
2,866,026	-		AO356_12570	0.75	+2.2
2,866,026	-		AO356_12570	0.75	+1.0
2,866,026	-		AO356_12570	0.75	-1.3
2,866,026	-		AO356_12570	0.75	-0.2
2,866,026	-		AO356_12570	0.75	+0.7
2,866,026	-		AO356_12570	0.75	+0.4
2,866,026	-		AO356_12570	0.75	+1.1
2,866,026	-		AO356_12570	0.75	+1.7
2,866,026	-		AO356_12570	0.75	-0.6
2,866,026	-		AO356_12570	0.75	+0.5
2,866,026	-		AO356_12570	0.75	-1.8
2,866,026	-		AO356_12570	0.75	-0.6
2,866,026	-		AO356_12570	0.75	-1.7
2,866,026	-		AO356_12570	0.75	-0.8
2,866,026	-		AO356_12570	0.75	-0.1
2,866,026	-		AO356_12570	0.75	-0.3
2,866,026	-		AO356_12570	0.75	-0.2
2,866,026	-		AO356_12570	0.75	+0.7
2,866,026	-		AO356_12570	0.75	-1.6
2,866,026	-		AO356_12570	0.75	+0.9
2,866,026	-		AO356_12570	0.75	-0.9
2,866,026	-		AO356_12570	0.75	+1.5
2,866,026	-		AO356_12570	0.75	+0.2
2,866,026	-		AO356_12570	0.75	-1.3
2,866,026	-		AO356_12570	0.75	-1.9
2,866,026	-		AO356_12570	0.75	-0.4
2,866,026	-		AO356_12570	0.75	-1.2
2,866,044	-		AO356_12570	0.83	-1.3
2,866,044	-		AO356_12570	0.83	-1.5
2,866,084	+				-0.2
2,866,084	+				-0.7
2,866,096	+				+0.7
2,866,096	+				-0.8
2,866,096	+				-0.7
2,866,096	+				+1.7
2,866,096	+				+0.6
2,866,096	+				+0.5
2,866,097	-				+0.3
2,866,156	+				-1.5
2,866,157	-				+1.0
2,866,157	-				+0.8
2,866,157	-				-0.0
2,866,157	-				-2.1
2,866,157	-				-1.7
2,866,160	+				-0.3
2,866,160	+				+0.9
2,866,160	+				+1.1
2,866,160	+				-0.3
2,866,160	+				+1.9
2,866,160	+				+1.3
2,866,160	+				-1.0
2,866,160	+				-1.0
2,866,160	+				-2.0
2,866,160	+				+0.3
2,866,160	+				+1.0
2,866,160	+				-0.0
2,866,160	+				-1.5
2,866,160	+				+0.5
2,866,160	+				-0.4
2,866,160	+				+0.5
2,866,160	+				+1.0
2,866,160	+				+0.5
2,866,160	+				-0.5
2,866,160	+				-1.2
2,866,160	+				-0.2
2,866,160	+				+0.5
2,866,160	+				+1.4
2,866,160	+				+0.7
2,866,160	+				+1.5
2,866,160	+				-2.6
2,866,160	+				+1.1
2,866,160	+				-0.9
2,866,161	-				+0.4
2,866,161	-				-1.0
2,866,161	-				+0.1
2,866,161	-				+1.7
2,866,161	-				-2.6
2,866,161	-				-2.0
2,866,161	-				-0.2
2,866,161	-				+0.2
2,866,161	-				-0.3
2,866,161	-				+0.6
2,866,161	-				+1.7
2,866,161	-				+0.4
2,866,161	-				-0.5
2,866,161	-				+1.0
2,866,161	-				-1.1
2,866,161	-				-0.2
2,866,161	-				+0.5
2,866,161	-				-1.2
2,866,161	-				+1.1
2,866,161	-				-2.1
2,866,161	-				-0.7
2,866,161	-				+0.8
2,866,164	+				-2.0
2,866,164	+				+0.8
2,866,164	+				-2.1
2,866,164	+				-0.7
2,866,164	+				+0.2
2,866,164	+				+1.9
2,866,164	+				+1.6
2,866,164	+				+0.4
2,866,164	+				+0.8
2,866,164	+				+0.6
2,866,164	+				-1.3
2,866,164	+				-2.1
2,866,164	+				-0.5
2,866,164	+				-1.8
2,866,165	-				+0.1
2,866,165	-				-0.2
2,866,165	-				-2.3
2,866,165	-				+1.3
2,866,165	-				+0.8
2,866,165	-				+2.2
2,866,165	-				+0.2
2,866,165	-				-1.6
2,866,165	-				+3.5
2,866,165	-				-0.2
2,866,166	+				+0.5
2,866,166	+				-2.0
2,866,166	+				-0.1
2,866,166	+				-2.3
2,866,166	+				+0.8
2,866,167	-				+1.4
2,866,167	-				-0.4
2,866,167	-				-2.3
2,866,167	-				+0.6
2,866,167	-				-2.0
2,866,167	-				+2.3
2,866,167	-				-0.5
2,866,188	+				+0.2
2,866,188	+				-2.1
2,866,188	+				+1.0
2,866,188	+				-0.0
2,866,188	+				-2.1
2,866,189	-				-1.1
2,866,189	-				+1.1
2,866,189	-				-0.7
2,866,326	+		AO356_12575	0.45	-0.6
2,866,326	+		AO356_12575	0.45	-0.4
2,866,326	+		AO356_12575	0.45	-1.3
2,866,327	-		AO356_12575	0.45	-0.8
2,866,327	-		AO356_12575	0.45	+1.3
2,866,341	+		AO356_12575	0.49	-1.0
2,866,341	+		AO356_12575	0.49	+1.2
2,866,341	+		AO356_12575	0.49	+0.3
2,866,342	-		AO356_12575	0.49	-1.5
2,866,342	-		AO356_12575	0.49	-1.7
2,866,376	+		AO356_12575	0.59	-1.1
2,866,377	-		AO356_12575	0.59	+0.7
2,866,410	+		AO356_12575	0.68	+0.2
2,866,410	+		AO356_12575	0.68	+0.6
2,866,410	+		AO356_12575	0.68	+0.8
2,866,410	+		AO356_12575	0.68	+0.7
2,866,411	-		AO356_12575	0.68	+0.9
2,866,411	-		AO356_12575	0.68	-1.4
2,866,486	+		AO356_12575	0.89	+1.0
2,866,486	+		AO356_12575	0.89	+0.8
2,866,487	-		AO356_12575	0.89	+2.9
2,866,487	-		AO356_12575	0.89	-0.1
2,866,565	+				+2.4
2,866,565	+				-0.1
2,866,565	+				-0.0
2,866,565	+				+0.5
2,866,566	-				-0.6
2,866,566	-				+1.1
2,866,572	-				-1.4
2,866,572	-				+3.4
2,866,574	+				-0.9
2,866,574	+				-1.2
2,866,574	+				-1.3
2,866,616	+				+1.1
2,866,616	+				-1.8
2,866,616	+				-0.4
2,866,616	+				-0.2
2,866,617	-				-0.5
2,866,617	-				+1.8
2,866,617	-				+0.3
2,866,617	-				+0.4
2,866,617	-				-0.8