Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11025

Experiment: Nitrate reduction with yeast extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction with yeast extract
2,502,707	+		AO356_11020	0.16	-2.3
2,503,041	+		AO356_11020	0.51	+1.0
2,503,041	+		AO356_11020	0.51	+0.6
2,503,042	-		AO356_11020	0.51	+1.1
2,503,042	-		AO356_11020	0.51	+0.6
2,503,072	-		AO356_11020	0.54	-1.5
2,503,193	+		AO356_11020	0.67	-1.2
2,503,193	+		AO356_11020	0.67	-0.4
2,503,430	+				-0.8
2,503,430	+				-1.2
2,503,430	+				-1.1
2,503,430	+				+0.7
2,503,431	-				+1.4
2,503,431	-				+0.8
2,503,431	-				-0.6
2,503,500	+				-0.1
2,503,500	+				+0.7
2,503,500	+				+0.1
2,503,501	-				+0.2
2,503,501	-				+0.8
2,503,501	-				+1.6
2,503,501	-				+2.0
2,503,501	-				+1.0
2,503,501	-				-1.5
2,503,501	-				-0.4
2,503,501	-				+2.2
2,503,512	+				-1.1
2,503,512	+				-0.1
2,503,512	+				+0.1
2,503,512	+				-1.3
2,503,512	+				+0.2
2,503,512	+				-0.3
2,503,512	+				-2.1
2,503,512	+				+1.2
2,503,512	+				+0.1
2,503,512	+				+0.1
2,503,513	-				-0.2
2,503,513	-				+0.1
2,503,513	-				+1.4
2,503,513	-				+0.0
2,503,513	-				-0.3
2,503,521	-				-2.0
2,503,539	+				+1.1
2,503,540	-				+0.6
2,503,540	-				-1.0
2,503,549	-				-2.2
2,503,549	-				-0.3
2,503,677	+				-0.4
2,503,677	+				+2.0
2,503,677	+				+1.0
2,503,677	+				-0.3
2,503,677	+				+1.2
2,503,677	+				-0.0
2,503,677	+				-2.4
2,503,678	-				+1.2
2,503,678	-				-0.4
2,503,678	-				+0.6
2,503,678	-				-1.9
2,503,678	-				+0.4
2,503,678	-				+2.1
2,503,678	-				-3.1
2,503,678	-				-0.6
2,503,678	-				-1.8
2,503,678	-				-1.4
2,503,678	-				-0.6
2,503,678	-				+1.4
2,503,678	-				+0.9
2,503,678	-				-0.4
2,503,678	-				+0.9
2,503,678	-				-0.6
2,503,678	-				+0.6
2,503,681	+				+0.8
2,503,681	+				+0.7
2,503,681	+				+0.8
2,503,681	+				-1.6
2,503,681	+				-2.7
2,503,681	+				+1.0
2,503,681	+				+0.2
2,503,682	-				+0.6
2,503,682	-				-1.3
2,503,682	-				-2.0
2,503,682	-				+0.3
2,503,682	-				+0.2
2,503,788	+		AO356_11025	0.15	-1.5
2,503,788	+		AO356_11025	0.15	-0.2
2,503,789	-		AO356_11025	0.15	+0.8
2,503,789	-		AO356_11025	0.15	-1.3
2,503,855	+		AO356_11025	0.23	+0.2
2,503,855	+		AO356_11025	0.23	+0.5
2,503,856	-		AO356_11025	0.24	+0.6
2,503,856	-		AO356_11025	0.24	-1.0
2,503,899	+		AO356_11025	0.29	-1.1
2,503,899	+		AO356_11025	0.29	+0.5
2,503,899	+		AO356_11025	0.29	-0.7
2,503,899	+		AO356_11025	0.29	-0.6
2,503,899	+		AO356_11025	0.29	-1.2
2,503,899	+		AO356_11025	0.29	-0.5
2,503,900	-		AO356_11025	0.29	+0.1
2,503,929	+		AO356_11025	0.33	-0.4
2,503,929	+		AO356_11025	0.33	-0.5
2,503,929	+		AO356_11025	0.33	-1.3
2,503,930	-		AO356_11025	0.33	+0.9
2,503,930	-		AO356_11025	0.33	-0.5
2,503,953	+		AO356_11025	0.36	-0.2
2,504,407	+				-0.4
2,504,407	+				-0.4
2,504,407	+				-0.4
2,504,408	-				+0.5
2,504,408	-				-1.7
2,504,416	+				+0.4
2,504,417	-				-0.6
2,504,489	+				-1.0
2,504,489	+				-1.1
2,504,489	+				-0.4
2,504,489	+				-2.0
2,504,489	+				-0.4
2,504,489	+				-0.4
2,504,489	+				-0.4
2,504,489	+				-0.6
2,504,489	+				+0.6
2,504,489	+				-0.5
2,504,490	-				+0.7
2,504,490	-				+1.1
2,504,519	+				-0.4
2,504,520	-				-1.3
2,504,557	+				+0.3
2,504,557	+				+1.5
2,504,557	+				+1.1
2,504,557	+				-0.6
2,504,557	+				+0.4
2,504,557	+				+2.1
2,504,557	+				-0.1
2,504,557	+				+2.3
2,504,558	-				-0.4
2,504,558	-				+1.9
2,504,558	-				-1.2
2,504,558	-				+0.4
2,504,632	+		AO356_11030	0.12	+1.6
2,504,632	+		AO356_11030	0.12	+0.8
2,504,632	+		AO356_11030	0.12	-1.2
2,504,632	+		AO356_11030	0.12	-1.3
2,504,632	+		AO356_11030	0.12	+0.7
2,504,632	+		AO356_11030	0.12	-0.0
2,504,632	+		AO356_11030	0.12	+1.6
2,504,632	+		AO356_11030	0.12	-0.3
2,504,632	+		AO356_11030	0.12	-1.3
2,504,632	+		AO356_11030	0.12	+1.1
2,504,632	+		AO356_11030	0.12	+1.3
2,504,632	+		AO356_11030	0.12	+0.5
2,504,632	+		AO356_11030	0.12	+2.0
2,504,632	+		AO356_11030	0.12	-0.8
2,504,632	+		AO356_11030	0.12	+0.0
2,504,632	+		AO356_11030	0.12	-1.2
2,504,632	+		AO356_11030	0.12	-1.5
2,504,632	+		AO356_11030	0.12	+0.2
2,504,632	+		AO356_11030	0.12	-0.5
2,504,632	+		AO356_11030	0.12	+1.0
2,504,632	+		AO356_11030	0.12	+2.0
2,504,632	+		AO356_11030	0.12	+1.6
2,504,633	-		AO356_11030	0.12	+1.7
2,504,633	-		AO356_11030	0.12	-1.1
2,504,633	-		AO356_11030	0.12	-0.6
2,504,633	-		AO356_11030	0.12	+1.8
2,504,633	-		AO356_11030	0.12	-0.8
2,504,633	-		AO356_11030	0.12	-0.9
2,504,633	-		AO356_11030	0.12	-0.3
2,504,633	-		AO356_11030	0.12	-0.5
2,504,633	-		AO356_11030	0.12	+2.1
2,504,633	-		AO356_11030	0.12	-1.0
2,504,633	-		AO356_11030	0.12	+2.9
2,504,633	-		AO356_11030	0.12	-0.8
2,504,633	-		AO356_11030	0.12	-1.1
2,504,633	-		AO356_11030	0.12	+1.1
2,504,647	+		AO356_11030	0.13	+0.5
2,504,647	+		AO356_11030	0.13	-0.9
2,504,719	+		AO356_11030	0.22	+2.3
2,504,719	+		AO356_11030	0.22	-0.7
2,504,720	-		AO356_11030	0.22	-0.5
2,504,720	-		AO356_11030	0.22	+0.2
2,504,720	-		AO356_11030	0.22	-1.1
2,504,986	+		AO356_11030	0.54	+1.4
2,504,987	-		AO356_11030	0.54	+1.9
2,505,070	+		AO356_11030	0.64	+1.1
2,505,070	+		AO356_11030	0.64	+1.3
2,505,070	+		AO356_11030	0.64	-0.8
2,505,070	+		AO356_11030	0.64	-0.7
2,505,070	+		AO356_11030	0.64	-0.6
2,505,071	-		AO356_11030	0.64	+1.4
2,505,071	-		AO356_11030	0.64	-0.0
2,505,085	+		AO356_11030	0.66	+0.4
2,505,086	-		AO356_11030	0.66	+1.4
2,505,086	-		AO356_11030	0.66	+0.1
2,505,212	+		AO356_11030	0.81	+0.1
2,505,229	+		AO356_11030	0.83	-0.5
2,505,229	+		AO356_11030	0.83	+0.1
2,505,229	+		AO356_11030	0.83	+0.7
2,505,229	+		AO356_11030	0.83	-0.3
2,505,229	+		AO356_11030	0.83	+0.4
2,505,230	-		AO356_11030	0.83	+1.7
2,505,230	-		AO356_11030	0.83	+0.2
2,505,250	+		AO356_11030	0.86	-1.2
2,505,250	+		AO356_11030	0.86	+1.9
2,505,251	-		AO356_11030	0.86	-0.8
2,505,270	+		AO356_11030	0.88	-0.6
2,505,271	-		AO356_11030	0.88	-0.2
2,505,350	+				-1.4
2,505,350	+				+0.4
2,505,350	+				-0.1
2,505,350	+				+0.5
2,505,350	+				+0.4
2,505,350	+				+0.1
2,505,350	+				-0.6
2,505,350	+				-0.5
2,505,351	-				-0.1
2,505,351	-				+1.5
2,505,351	-				+1.6
2,505,351	-				+0.3
2,505,351	-				-0.1
2,505,351	-				-0.8
2,505,351	-				+1.2
2,505,351	-				+1.9
2,505,351	-				+0.1
2,505,351	-				+0.7
2,505,351	-				+2.4
2,505,385	+				+2.9
2,505,386	-				-0.1