Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10620

Experiment: Nitrate reduction with yeast extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction with yeast extract
2,418,140	-		AO356_10615	0.64	-0.7
2,418,140	-		AO356_10615	0.64	-1.5
2,418,172	-		AO356_10615	0.65	+2.7
2,418,172	-		AO356_10615	0.65	+0.0
2,418,396	+		AO356_10615	0.77	+2.0
2,418,397	-		AO356_10615	0.77	-1.5
2,418,397	-		AO356_10615	0.77	+1.5
2,418,441	+		AO356_10615	0.80	+0.2
2,418,441	+		AO356_10615	0.80	+1.1
2,418,441	+		AO356_10615	0.80	-1.8
2,418,441	+		AO356_10615	0.80	-1.9
2,418,442	-		AO356_10615	0.80	-2.4
2,418,442	-		AO356_10615	0.80	+1.5
2,418,442	-		AO356_10615	0.80	-1.7
2,418,521	+		AO356_10615	0.84	-1.1
2,418,521	+		AO356_10615	0.84	-2.3
2,418,521	+		AO356_10615	0.84	-0.1
2,418,522	-		AO356_10615	0.84	-1.0
2,418,522	-		AO356_10615	0.84	-0.8
2,418,522	-		AO356_10615	0.84	+2.4
2,418,522	-		AO356_10615	0.84	+1.9
2,418,522	-		AO356_10615	0.84	-2.4
2,418,522	-		AO356_10615	0.84	-1.4
2,418,522	-		AO356_10615	0.84	+2.0
2,418,522	-		AO356_10615	0.84	+0.5
2,418,522	-		AO356_10615	0.84	+1.2
2,418,525	+		AO356_10615	0.84	-2.5
2,418,525	+		AO356_10615	0.84	-2.3
2,418,525	+		AO356_10615	0.84	-1.4
2,418,525	+		AO356_10615	0.84	-1.3
2,418,525	+		AO356_10615	0.84	-0.5
2,418,525	+		AO356_10615	0.84	-2.2
2,418,525	+		AO356_10615	0.84	+1.2
2,418,525	+		AO356_10615	0.84	-0.6
2,418,525	+		AO356_10615	0.84	+1.6
2,418,525	+		AO356_10615	0.84	-0.9
2,418,525	+		AO356_10615	0.84	+0.5
2,418,525	+		AO356_10615	0.84	-1.7
2,418,526	-		AO356_10615	0.84	+1.7
2,418,526	-		AO356_10615	0.84	-1.0
2,418,526	-		AO356_10615	0.84	+0.5
2,418,526	-		AO356_10615	0.84	+2.5
2,418,526	-		AO356_10615	0.84	-2.2
2,418,526	-		AO356_10615	0.84	-0.3
2,418,526	-		AO356_10615	0.84	+1.4
2,418,526	-		AO356_10615	0.84	+2.7
2,418,526	-		AO356_10615	0.84	-1.6
2,418,526	-		AO356_10615	0.84	+0.0
2,418,526	-		AO356_10615	0.84	-0.5
2,418,526	-		AO356_10615	0.84	-1.7
2,418,526	-		AO356_10615	0.84	-0.3
2,418,526	-		AO356_10615	0.84	+1.0
2,418,526	-		AO356_10615	0.84	+0.4
2,418,526	-		AO356_10615	0.84	+2.0
2,418,526	-		AO356_10615	0.84	-0.1
2,418,526	-		AO356_10615	0.84	-1.1
2,418,526	-		AO356_10615	0.84	-1.3
2,418,732	+				+1.5
2,418,732	+				+0.6
2,418,733	-				-1.3
2,418,733	-				+0.1
2,418,733	-				-0.6
2,418,741	+				-1.1
2,418,741	+				-0.5
2,418,741	+				-1.3
2,418,742	-				+0.1
2,418,742	-				-0.8
2,418,812	+				+1.8
2,418,834	+				+2.4
2,418,834	+				+1.1
2,418,834	+				-0.6
2,418,834	+				-0.5
2,418,834	+				+1.1
2,418,835	-				+2.6
2,418,835	-				+2.1
2,418,835	-				-0.5
2,418,835	-				+1.3
2,418,835	-				+0.7
2,418,875	+				-1.5
2,418,875	+				+0.9
2,418,875	+				+0.5
2,418,876	-				-0.9
2,418,876	-				+1.7
2,418,876	-				+1.6
2,418,876	-				+0.1
2,418,876	-				+0.9
2,418,876	-				+1.0
2,418,876	-				+1.1
2,418,876	-				+2.8
2,418,876	-				-1.2
2,418,877	+				+1.4
2,418,877	+				+0.2
2,418,877	+				+0.7
2,418,877	+				+1.0
2,418,877	+				+0.1
2,418,877	+				+1.2
2,418,877	+				+0.8
2,418,877	+				-1.2
2,418,877	+				-0.0
2,418,878	-				+0.8
2,418,878	-				+0.8
2,418,878	-				-2.1
2,418,878	-				+0.4
2,418,878	-				+2.0
2,418,878	-				-0.3
2,418,878	-				-1.5
2,418,878	-				+2.4
2,418,878	-				+0.4
2,418,878	-				-1.1
2,418,878	-				+0.2
2,418,878	-				-0.5
2,418,922	+				-1.6
2,418,923	-				-1.6
2,418,923	-				+1.4
2,418,923	-				-2.1
2,418,923	-				-1.3
2,418,923	-				-1.7
2,418,944	+				+0.7
2,418,944	+				-1.7
2,418,944	+				-2.5
2,418,944	+				+0.8
2,418,944	+				-1.0
2,418,950	+				-2.5
2,418,950	+				+0.2
2,418,950	+				-0.1
2,418,950	+				-1.4
2,418,950	+				-0.3
2,418,950	+				+0.7
2,418,950	+				-2.4
2,418,951	-				-0.1
2,418,951	-				+2.6
2,418,951	-				+2.4
2,418,951	-				-1.0
2,418,951	-				-0.6
2,418,955	-				-0.6
2,418,970	+				+0.2
2,418,971	-				+1.3
2,419,052	-				+1.0
2,419,096	-				+1.3
2,419,096	-				+1.1
2,419,132	+		AO356_10620	0.12	-0.4
2,419,132	+		AO356_10620	0.12	+0.8
2,419,132	+		AO356_10620	0.12	-1.2
2,419,132	+		AO356_10620	0.12	-1.5
2,419,132	+		AO356_10620	0.12	+0.5
2,419,132	+		AO356_10620	0.12	-0.1
2,419,133	-		AO356_10620	0.12	+2.7
2,419,231	+		AO356_10620	0.32	+0.5
2,419,231	+		AO356_10620	0.32	+1.1
2,419,231	+		AO356_10620	0.32	-1.4
2,419,231	+		AO356_10620	0.32	+1.9
2,419,231	+		AO356_10620	0.32	+1.4
2,419,231	+		AO356_10620	0.32	-0.6
2,419,232	-		AO356_10620	0.32	+0.4
2,419,232	-		AO356_10620	0.32	-2.4
2,419,232	-		AO356_10620	0.32	+0.8
2,419,232	-		AO356_10620	0.32	+0.2
2,419,232	-		AO356_10620	0.32	-1.0
2,419,232	-		AO356_10620	0.32	+0.2
2,419,232	-		AO356_10620	0.32	-0.3
2,419,232	-		AO356_10620	0.32	+0.6
2,419,232	-		AO356_10620	0.32	-1.6
2,419,234	+		AO356_10620	0.32	-2.4
2,419,235	-		AO356_10620	0.32	-2.1
2,419,235	-		AO356_10620	0.32	-0.7
2,419,472	+		AO356_10620	0.80	-0.2
2,419,472	+		AO356_10620	0.80	+1.7
2,419,472	+		AO356_10620	0.80	-0.8
2,419,472	+		AO356_10620	0.80	+2.1
2,419,472	+		AO356_10620	0.80	+1.6
2,419,473	-		AO356_10620	0.80	-2.3
2,419,473	-		AO356_10620	0.80	-2.3
2,419,473	-		AO356_10620	0.80	-2.1
2,419,473	-		AO356_10620	0.80	+1.7
2,419,473	-		AO356_10620	0.80	-1.5
2,419,523	+		AO356_10620	0.90	-0.0
2,419,524	-				+0.9
2,419,524	-				-2.4
2,419,541	+				-1.8
2,419,541	+				-0.5
2,419,541	+				+0.1
2,419,541	+				-1.7
2,419,541	+				+1.2
2,419,542	-				+3.0
2,419,550	+				+0.3
2,419,550	+				+0.5
2,419,550	+				-0.8
2,419,550	+				-1.5
2,419,550	+				+3.0
2,419,550	+				-2.5
2,419,550	+				+2.5
2,419,551	-				+1.1
2,419,551	-				+0.8
2,419,551	-				+3.5
2,419,551	-				-0.9
2,419,551	-				+1.5
2,419,551	-				-0.2
2,419,551	-				+2.1
2,419,551	-				-0.8
2,419,562	+				+2.0
2,419,562	+				-2.5
2,420,003	+		AO356_10625	0.44	+0.6
2,420,052	-		AO356_10625	0.49	+1.1
2,420,272	-		AO356_10625	0.71	+2.6
2,420,272	-		AO356_10625	0.71	-0.0
2,420,272	-		AO356_10625	0.71	-1.4
2,420,272	-		AO356_10625	0.71	+0.2
2,420,512	+				+0.9