Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09010

Experiment: Nitrate reduction with yeast extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction with yeast extract
2,035,938	-				+1.4
2,035,981	-				-1.7
2,036,133	+				-0.4
2,036,144	+				-1.6
2,036,145	-				-1.2
2,036,145	-				+2.8
2,036,145	-				+1.3
2,036,145	-				-0.6
2,036,188	+				+0.8
2,036,188	+				-1.2
2,036,189	-				-2.3
2,036,189	-				+0.9
2,036,189	-				+0.5
2,036,189	-				-1.9
2,036,189	-				-2.4
2,036,220	-				+0.9
2,036,256	+				+1.3
2,036,256	+				-0.1
2,036,256	+				-0.1
2,036,256	+				+0.5
2,036,256	+				+2.2
2,036,257	-				+2.3
2,036,257	-				-1.0
2,036,367	+				-1.9
2,036,419	+		AO356_09005	0.13	+0.4
2,036,419	+		AO356_09005	0.13	+1.2
2,036,420	-		AO356_09005	0.13	+2.7
2,036,477	+		AO356_09005	0.24	-0.1
2,036,478	-		AO356_09005	0.25	+0.5
2,036,790	+		AO356_09005	0.87	+0.2
2,036,790	+		AO356_09005	0.87	-0.9
2,036,790	+		AO356_09005	0.87	+0.4
2,036,790	+		AO356_09005	0.87	-1.5
2,036,790	+		AO356_09005	0.87	+0.4
2,036,790	+		AO356_09005	0.87	-0.8
2,036,790	+		AO356_09005	0.87	-0.9
2,036,790	+		AO356_09005	0.87	-0.0
2,036,790	+		AO356_09005	0.87	-1.3
2,036,790	+		AO356_09005	0.87	-2.2
2,036,790	+		AO356_09005	0.87	+1.4
2,036,790	+		AO356_09005	0.87	-0.4
2,036,790	+		AO356_09005	0.87	-1.3
2,036,790	+		AO356_09005	0.87	-1.6
2,036,790	+		AO356_09005	0.87	-1.5
2,036,791	-		AO356_09005	0.88	+1.2
2,036,791	-		AO356_09005	0.88	+2.2
2,036,791	-		AO356_09005	0.88	+0.2
2,036,791	-		AO356_09005	0.88	+0.7
2,036,791	-		AO356_09005	0.88	-0.9
2,036,850	+				+0.6
2,036,851	-				-1.9
2,036,851	-				+0.0
2,036,926	+				-0.4
2,036,926	+				-0.1
2,036,976	-				-0.6
2,036,976	-				+2.0
2,037,010	+				+1.2
2,037,010	+				+1.1
2,037,011	-				+2.3
2,037,011	-				-1.0
2,037,011	-				+1.6
2,037,053	-				+2.1
2,037,053	-				-0.7
2,037,203	-		AO356_09010	0.19	+0.1
2,037,338	-		AO356_09010	0.28	+4.2
2,037,423	+		AO356_09010	0.34	-0.8
2,037,423	+		AO356_09010	0.34	-2.8
2,037,423	+		AO356_09010	0.34	+0.9
2,037,423	+		AO356_09010	0.34	-2.0
2,037,423	+		AO356_09010	0.34	-1.9
2,037,424	-		AO356_09010	0.34	-1.4
2,037,424	-		AO356_09010	0.34	+1.4
2,037,424	-		AO356_09010	0.34	-1.3
2,037,526	+		AO356_09010	0.40	+0.4
2,037,526	+		AO356_09010	0.40	-1.6
2,037,526	+		AO356_09010	0.40	+1.4
2,037,527	-		AO356_09010	0.41	+2.3
2,037,527	-		AO356_09010	0.41	-0.8
2,037,667	+		AO356_09010	0.50	+0.3
2,037,668	-		AO356_09010	0.50	+0.9
2,037,668	-		AO356_09010	0.50	+0.3
2,037,668	-		AO356_09010	0.50	-1.2
2,037,889	+		AO356_09010	0.65	+0.1
2,037,889	+		AO356_09010	0.65	+1.0
2,037,889	+		AO356_09010	0.65	+2.3
2,037,890	-		AO356_09010	0.65	+2.1
2,037,890	-		AO356_09010	0.65	+2.4
2,037,890	-		AO356_09010	0.65	-2.3
2,037,890	-		AO356_09010	0.65	-2.2
2,037,931	+		AO356_09010	0.68	-0.3
2,037,991	+		AO356_09010	0.72	+1.6
2,037,991	+		AO356_09010	0.72	-1.8
2,037,991	+		AO356_09010	0.72	+2.3
2,037,991	+		AO356_09010	0.72	+0.9
2,037,991	+		AO356_09010	0.72	+0.7
2,037,991	+		AO356_09010	0.72	+1.6
2,037,991	+		AO356_09010	0.72	+0.1
2,037,991	+		AO356_09010	0.72	+1.6
2,037,991	+		AO356_09010	0.72	+0.0
2,037,991	+		AO356_09010	0.72	+1.2
2,037,991	+		AO356_09010	0.72	+1.3
2,037,992	-		AO356_09010	0.72	+0.7
2,037,992	-		AO356_09010	0.72	+1.8
2,037,992	-		AO356_09010	0.72	-1.2
2,037,992	-		AO356_09010	0.72	-0.5
2,037,992	-		AO356_09010	0.72	-0.2
2,037,992	-		AO356_09010	0.72	-1.9
2,037,992	-		AO356_09010	0.72	+0.4
2,038,072	+		AO356_09010	0.77	-1.7
2,038,072	+		AO356_09010	0.77	-0.5
2,038,073	-		AO356_09010	0.77	-0.3
2,038,151	-		AO356_09010	0.83	-1.2
2,038,151	-		AO356_09010	0.83	+1.6
2,038,202	+		AO356_09010	0.86	+1.4
2,038,202	+		AO356_09010	0.86	-2.8
2,038,202	+		AO356_09010	0.86	+0.9
2,038,202	+		AO356_09010	0.86	+0.2
2,038,202	+		AO356_09010	0.86	-1.0
2,038,202	+		AO356_09010	0.86	-0.8
2,038,202	+		AO356_09010	0.86	+0.1
2,038,202	+		AO356_09010	0.86	+1.6
2,038,202	+		AO356_09010	0.86	+0.3
2,038,203	-		AO356_09010	0.86	-1.9
2,038,203	-		AO356_09010	0.86	-1.4
2,038,203	-		AO356_09010	0.86	-0.5
2,038,203	-		AO356_09010	0.86	+1.4
2,038,203	-		AO356_09010	0.86	+0.8
2,038,203	-		AO356_09010	0.86	+1.6
2,038,203	-		AO356_09010	0.86	+0.6
2,038,203	-		AO356_09010	0.86	-1.8
2,038,203	-		AO356_09010	0.86	+1.0
2,038,203	-		AO356_09010	0.86	+0.8
2,038,203	-		AO356_09010	0.86	-0.4
2,038,203	-		AO356_09010	0.86	+0.4
2,038,203	-		AO356_09010	0.86	-0.2
2,038,203	-		AO356_09010	0.86	-2.4
2,038,203	-		AO356_09010	0.86	+0.8
2,038,203	-		AO356_09010	0.86	+0.2
2,038,203	-		AO356_09010	0.86	+0.7
2,038,204	+		AO356_09010	0.86	+1.5
2,038,204	+		AO356_09010	0.86	+1.3
2,038,204	+		AO356_09010	0.86	-0.2
2,038,204	+		AO356_09010	0.86	-0.2
2,038,204	+		AO356_09010	0.86	-0.3
2,038,204	+		AO356_09010	0.86	+1.3
2,038,204	+		AO356_09010	0.86	+2.3
2,038,204	+		AO356_09010	0.86	+1.4
2,038,204	+		AO356_09010	0.86	+0.6
2,038,204	+		AO356_09010	0.86	+0.5
2,038,204	+		AO356_09010	0.86	+0.8
2,038,204	+		AO356_09010	0.86	+0.7
2,038,204	+		AO356_09010	0.86	-0.4
2,038,204	+		AO356_09010	0.86	+1.8
2,038,204	+		AO356_09010	0.86	+1.3
2,038,204	+		AO356_09010	0.86	+0.3
2,038,204	+		AO356_09010	0.86	-0.3
2,038,204	+		AO356_09010	0.86	+1.4
2,038,204	+		AO356_09010	0.86	-2.1
2,038,205	-		AO356_09010	0.86	-2.1
2,038,205	-		AO356_09010	0.86	-1.2
2,038,205	-		AO356_09010	0.86	+1.5
2,038,205	-		AO356_09010	0.86	-0.9
2,038,205	-		AO356_09010	0.86	+0.5
2,038,205	-		AO356_09010	0.86	-0.4
2,038,205	-		AO356_09010	0.86	+1.7
2,038,205	-		AO356_09010	0.86	-2.3
2,038,205	-		AO356_09010	0.86	+0.3
2,038,205	-		AO356_09010	0.86	-1.0
2,038,205	-		AO356_09010	0.86	-0.4
2,038,205	-		AO356_09010	0.86	+0.8
2,038,205	-		AO356_09010	0.86	+0.4
2,038,205	-		AO356_09010	0.86	+0.2
2,038,205	-		AO356_09010	0.86	-1.2
2,038,205	-		AO356_09010	0.86	+0.9
2,038,205	-		AO356_09010	0.86	+0.8
2,038,306	+				+0.1
2,038,306	+				-3.2
2,038,307	-				+1.0
2,038,307	-				-1.0
2,038,333	+				+0.6
2,038,369	+				+1.4
2,038,369	+				+0.5
2,038,369	+				+1.4
2,038,370	-				+2.1
2,038,370	-				-1.5
2,038,397	+				-0.3
2,038,397	+				-1.4
2,038,397	+				+1.6
2,038,397	+				-3.1
2,038,397	+				+0.8
2,038,398	-				+1.1
2,038,400	+				-0.3
2,038,400	+				+1.4
2,038,400	+				+1.8
2,038,401	-				+0.6
2,038,401	-				-1.3
2,038,401	-				-2.0
2,038,415	-				-0.5
2,038,415	-				-0.2
2,038,415	-				-0.3
2,038,433	+				-2.0
2,038,434	-				+1.9
2,038,434	-				-0.1
2,038,434	-				-2.5
2,038,476	+				-2.2
2,038,476	+				-1.1
2,038,476	+				-0.2
2,038,503	+				-1.2
2,038,581	+				+1.1
2,038,598	-				-0.7
2,038,622	+				-0.7
2,038,622	+				-0.3
2,038,622	+				+0.5
2,038,674	+				+0.8
2,038,675	-				-0.4
2,038,697	+				+0.5
2,038,697	+				-1.1
2,038,698	-				-1.4
2,038,698	-				+1.6
2,038,698	-				+1.5
2,038,698	-				+2.5
2,038,712	+				+2.1
2,038,713	-				-1.0
2,038,817	+				-0.1
2,038,818	-				+0.4
2,038,818	-				-0.4
2,038,818	-				+1.5
2,038,818	-				+0.5
2,038,818	-				-0.7
2,038,818	-				-0.4
2,038,846	+				+1.6
2,038,846	+				-1.0
2,038,847	-				-1.8
2,038,847	-				+1.7
2,038,847	-				+0.7
2,038,847	-				-1.3
2,038,847	-				-1.1
2,038,853	+				+0.9
2,038,854	-				+1.3
2,038,865	+				+1.2
2,038,871	+				-2.2
2,038,989	+				+0.5
2,039,071	+				-1.3
2,039,071	+				-1.0
2,039,072	-				-0.7
2,039,072	-				+0.0
2,039,072	-				-0.4
2,039,072	-				-0.2
2,039,072	-				-0.3