Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08330

Experiment: Nitrate reduction with yeast extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction with yeast extract
1,870,195	+		AO356_08320	0.14	-1.8
1,870,195	+		AO356_08320	0.14	-0.5
1,870,195	+		AO356_08320	0.14	+1.5
1,870,196	-		AO356_08320	0.14	+1.0
1,870,196	-		AO356_08320	0.14	-0.9
1,870,196	-		AO356_08320	0.14	+2.5
1,870,196	-		AO356_08320	0.14	-0.6
1,870,196	-		AO356_08320	0.14	+1.0
1,870,270	+		AO356_08320	0.29	+0.4
1,870,271	-		AO356_08320	0.30	+0.9
1,870,271	-		AO356_08320	0.30	+0.1
1,870,447	+		AO356_08320	0.66	-1.4
1,870,606	+				+1.0
1,870,612	+				-0.2
1,870,984	+		AO356_08325	0.79	-1.2
1,870,985	-		AO356_08325	0.79	+2.3
1,870,985	-		AO356_08325	0.79	+2.2
1,870,985	-		AO356_08325	0.79	-0.0
1,870,985	-		AO356_08325	0.79	-1.1
1,871,095	+				-0.0
1,871,095	+				-2.9
1,871,096	-				+1.5
1,871,096	-				-0.4
1,871,130	+				-0.1
1,871,130	+				+0.6
1,871,131	-				-0.4
1,871,427	-		AO356_08330	0.13	-1.6
1,871,582	+		AO356_08330	0.20	+1.9
1,871,582	+		AO356_08330	0.20	+0.5
1,871,582	+		AO356_08330	0.20	-0.4
1,871,582	+		AO356_08330	0.20	-1.9
1,871,582	+		AO356_08330	0.20	+0.2
1,871,582	+		AO356_08330	0.20	+2.7
1,871,582	+		AO356_08330	0.20	+0.9
1,871,583	-		AO356_08330	0.20	-0.4
1,871,583	-		AO356_08330	0.20	+0.1
1,871,583	-		AO356_08330	0.20	-0.2
1,871,583	-		AO356_08330	0.20	-0.9
1,871,583	-		AO356_08330	0.20	+0.7
1,871,583	-		AO356_08330	0.20	+2.9
1,871,583	-		AO356_08330	0.20	+0.3
1,871,583	-		AO356_08330	0.20	+1.4
1,871,584	+		AO356_08330	0.20	+2.0
1,871,584	+		AO356_08330	0.20	-0.1
1,871,584	+		AO356_08330	0.20	+1.4
1,871,584	+		AO356_08330	0.20	+2.6
1,871,584	+		AO356_08330	0.20	-1.7
1,871,584	+		AO356_08330	0.20	+1.1
1,871,584	+		AO356_08330	0.20	+1.4
1,871,584	+		AO356_08330	0.20	+2.6
1,871,585	-		AO356_08330	0.20	-0.7
1,871,585	-		AO356_08330	0.20	+0.8
1,871,600	+		AO356_08330	0.21	-0.3
1,871,600	+		AO356_08330	0.21	+0.4
1,871,795	+		AO356_08330	0.30	+1.4
1,871,795	+		AO356_08330	0.30	+1.6
1,871,795	+		AO356_08330	0.30	-0.8
1,871,795	+		AO356_08330	0.30	+0.3
1,871,795	+		AO356_08330	0.30	+1.0
1,871,795	+		AO356_08330	0.30	+0.2
1,871,796	-		AO356_08330	0.30	-0.1
1,871,799	+		AO356_08330	0.30	-2.1
1,871,799	+		AO356_08330	0.30	+0.4
1,871,799	+		AO356_08330	0.30	-0.2
1,871,799	+		AO356_08330	0.30	+1.9
1,871,799	+		AO356_08330	0.30	-0.1
1,871,799	+		AO356_08330	0.30	+1.2
1,871,800	-		AO356_08330	0.30	+0.0
1,871,800	-		AO356_08330	0.30	-0.1
1,871,800	-		AO356_08330	0.30	-0.1
1,871,800	-		AO356_08330	0.30	+1.8
1,871,800	-		AO356_08330	0.30	-0.2
1,871,870	+		AO356_08330	0.34	+1.5
1,871,967	-		AO356_08330	0.38	+1.5
1,872,074	+		AO356_08330	0.43	+0.3
1,872,074	+		AO356_08330	0.43	-0.1
1,872,075	-		AO356_08330	0.43	+0.6
1,872,075	-		AO356_08330	0.43	+1.4
1,872,077	+		AO356_08330	0.43	+1.1
1,872,077	+		AO356_08330	0.43	+0.5
1,872,077	+		AO356_08330	0.43	+1.8
1,872,077	+		AO356_08330	0.43	-0.5
1,872,077	+		AO356_08330	0.43	-1.7
1,872,077	+		AO356_08330	0.43	-1.2
1,872,077	+		AO356_08330	0.43	+0.1
1,872,077	+		AO356_08330	0.43	-1.5
1,872,077	+		AO356_08330	0.43	+0.8
1,872,078	-		AO356_08330	0.43	-0.7
1,872,078	-		AO356_08330	0.43	+1.9
1,872,078	-		AO356_08330	0.43	+0.1
1,872,078	-		AO356_08330	0.43	+2.2
1,872,078	-		AO356_08330	0.43	+0.6
1,872,078	-		AO356_08330	0.43	+0.5
1,872,083	+		AO356_08330	0.44	+0.2
1,872,083	+		AO356_08330	0.44	-2.1
1,872,084	-		AO356_08330	0.44	+1.7
1,872,084	-		AO356_08330	0.44	-1.3
1,872,084	-		AO356_08330	0.44	+1.7
1,872,107	+		AO356_08330	0.45	-1.2
1,872,107	+		AO356_08330	0.45	+0.2
1,872,107	+		AO356_08330	0.45	-0.1
1,872,107	+		AO356_08330	0.45	+0.6
1,872,107	+		AO356_08330	0.45	-0.6
1,872,107	+		AO356_08330	0.45	+1.7
1,872,108	-		AO356_08330	0.45	+2.3
1,872,108	-		AO356_08330	0.45	+1.3
1,872,108	-		AO356_08330	0.45	+2.2
1,872,108	-		AO356_08330	0.45	+1.6
1,872,290	+		AO356_08330	0.53	+0.7
1,872,290	+		AO356_08330	0.53	-1.4
1,872,290	+		AO356_08330	0.53	-0.7
1,872,290	+		AO356_08330	0.53	-0.9
1,872,290	+		AO356_08330	0.53	+0.7
1,872,290	+		AO356_08330	0.53	+1.8
1,872,290	+		AO356_08330	0.53	+1.6
1,872,291	-		AO356_08330	0.54	-0.1
1,872,291	-		AO356_08330	0.54	+1.4
1,872,291	-		AO356_08330	0.54	+2.3
1,872,305	+		AO356_08330	0.54	-0.4
1,872,305	+		AO356_08330	0.54	+1.1
1,872,332	+		AO356_08330	0.55	+2.1
1,872,332	+		AO356_08330	0.55	-0.8
1,872,333	-		AO356_08330	0.55	-0.6
1,872,333	-		AO356_08330	0.55	+1.8
1,872,333	-		AO356_08330	0.55	+0.0
1,872,552	-		AO356_08330	0.66	+1.0
1,872,552	-		AO356_08330	0.66	-0.6
1,872,689	+		AO356_08330	0.72	+2.3
1,872,689	+		AO356_08330	0.72	-0.6
1,872,689	+		AO356_08330	0.72	+1.9
1,872,726	-		AO356_08330	0.74	-0.6
1,872,726	-		AO356_08330	0.74	+0.6
1,872,726	-		AO356_08330	0.74	-0.3
1,872,746	+		AO356_08330	0.75	+0.4
1,872,746	+		AO356_08330	0.75	-0.3
1,872,746	+		AO356_08330	0.75	+3.7
1,872,762	-		AO356_08330	0.76	-0.3
1,872,842	+		AO356_08330	0.79	+0.8
1,872,842	+		AO356_08330	0.79	-1.1
1,872,885	-		AO356_08330	0.81	-0.1
1,872,885	-		AO356_08330	0.81	+0.1
1,872,963	-		AO356_08330	0.85	+0.9
1,873,058	+		AO356_08330	0.90	+1.2
1,873,164	-				+0.0
1,873,228	+				+0.2
1,873,229	-				+0.2
1,873,437	+				+0.7
1,873,437	+				-2.5
1,873,437	+				+1.0
1,873,437	+				-0.3
1,873,437	+				+1.3
1,873,437	+				-1.4
1,873,437	+				+1.7
1,873,437	+				+1.5
1,873,437	+				+0.5
1,873,437	+				+0.7
1,873,437	+				+0.3
1,873,437	+				+1.0
1,873,437	+				-0.5
1,873,437	+				+2.7
1,873,437	+				+1.7
1,873,437	+				-1.1
1,873,437	+				+1.7
1,873,437	+				+1.2
1,873,437	+				+0.5
1,873,437	+				-1.0
1,873,437	+				+1.2
1,873,437	+				+1.1
1,873,437	+				+1.4
1,873,437	+				+0.2
1,873,437	+				+0.4
1,873,438	-				+3.3
1,873,438	-				+1.2
1,873,438	-				+2.8
1,873,438	-				-0.1
1,873,438	-				-0.2
1,873,438	-				-0.5
1,873,438	-				-1.6
1,873,438	-				+0.4
1,873,438	-				+0.9
1,873,438	-				-0.5
1,873,438	-				+1.1
1,873,438	-				-0.3
1,873,495	+				+0.5
1,873,495	+				-1.0
1,873,495	+				-1.7
1,873,496	-				+1.5
1,873,523	-				+1.0
1,873,579	+				-0.9
1,873,579	+				-0.8
1,873,579	+				-2.7
1,873,579	+				+2.2
1,873,580	-				+0.7
1,873,580	-				+0.2
1,873,580	-				+1.5
1,873,612	+		AO356_08335	0.10	-1.0
1,873,612	+		AO356_08335	0.10	+2.6
1,873,613	-		AO356_08335	0.10	+0.6
1,873,613	-		AO356_08335	0.10	+1.3
1,873,674	+		AO356_08335	0.15	-0.0
1,873,674	+		AO356_08335	0.15	+1.8
1,873,674	+		AO356_08335	0.15	+0.7
1,873,675	-		AO356_08335	0.15	-0.3
1,873,675	-		AO356_08335	0.15	+0.5
1,873,714	+		AO356_08335	0.18	-1.2
1,873,714	+		AO356_08335	0.18	+1.0
1,873,715	-		AO356_08335	0.18	+0.6
1,873,951	+		AO356_08335	0.35	-2.7
1,873,951	+		AO356_08335	0.35	+1.0
1,873,952	-		AO356_08335	0.35	-0.5
1,874,125	+		AO356_08335	0.47	-1.5
1,874,237	+		AO356_08335	0.56	-1.0
1,874,237	+		AO356_08335	0.56	-2.0
1,874,237	+		AO356_08335	0.56	+0.7
1,874,245	-		AO356_08335	0.56	-0.1