Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04605

Experiment: Nitrate reduction with yeast extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction with yeast extract
1,035,786	-		AO356_04600	0.20	-0.6
1,035,891	+		AO356_04600	0.32	-1.3
1,035,891	+		AO356_04600	0.32	-1.5
1,035,891	+		AO356_04600	0.32	-2.9
1,035,891	+		AO356_04600	0.32	-2.8
1,035,892	-		AO356_04600	0.33	-0.0
1,035,953	-		AO356_04600	0.40	-0.6
1,035,953	-		AO356_04600	0.40	-1.1
1,035,953	-		AO356_04600	0.40	+2.1
1,036,011	+		AO356_04600	0.47	+0.4
1,036,011	+		AO356_04600	0.47	-0.2
1,036,011	+		AO356_04600	0.47	-1.1
1,036,011	+		AO356_04600	0.47	+0.3
1,036,011	+		AO356_04600	0.47	+0.2
1,036,011	+		AO356_04600	0.47	-1.7
1,036,011	+		AO356_04600	0.47	-0.9
1,036,012	-		AO356_04600	0.47	-0.5
1,036,012	-		AO356_04600	0.47	+2.0
1,036,012	-		AO356_04600	0.47	+2.1
1,036,029	+		AO356_04600	0.49	-2.1
1,036,029	+		AO356_04600	0.49	+1.2
1,036,104	+		AO356_04600	0.58	+1.0
1,036,104	+		AO356_04600	0.58	+0.6
1,036,104	+		AO356_04600	0.58	-2.3
1,036,104	+		AO356_04600	0.58	-1.0
1,036,105	-		AO356_04600	0.59	+2.5
1,036,105	-		AO356_04600	0.59	+0.0
1,036,105	-		AO356_04600	0.59	-1.7
1,036,105	-		AO356_04600	0.59	+1.8
1,036,105	-		AO356_04600	0.59	+0.4
1,036,105	-		AO356_04600	0.59	-2.2
1,036,105	-		AO356_04600	0.59	+0.4
1,036,119	-		AO356_04600	0.60	-0.9
1,036,119	-		AO356_04600	0.60	+0.2
1,036,126	+		AO356_04600	0.61	-1.0
1,036,127	-		AO356_04600	0.61	-0.8
1,036,127	-		AO356_04600	0.61	-0.5
1,036,127	-		AO356_04600	0.61	+1.2
1,036,127	-		AO356_04600	0.61	+0.4
1,036,242	+		AO356_04600	0.75	-0.3
1,036,242	+		AO356_04600	0.75	-1.1
1,036,242	+		AO356_04600	0.75	+0.7
1,036,243	-		AO356_04600	0.75	-1.4
1,036,243	-		AO356_04600	0.75	+0.9
1,036,278	+		AO356_04600	0.80	+3.0
1,036,279	-		AO356_04600	0.80	+0.8
1,036,308	+		AO356_04600	0.83	+1.3
1,036,308	+		AO356_04600	0.83	+2.3
1,036,309	-		AO356_04600	0.83	+0.1
1,036,309	-		AO356_04600	0.83	+0.4
1,036,309	-		AO356_04600	0.83	-1.5
1,036,309	-		AO356_04600	0.83	-2.1
1,036,309	-		AO356_04600	0.83	+1.5
1,036,309	-		AO356_04600	0.83	-0.0
1,036,309	-		AO356_04600	0.83	-1.2
1,036,309	-		AO356_04600	0.83	-1.1
1,036,314	+		AO356_04600	0.84	+0.0
1,036,314	+		AO356_04600	0.84	+0.8
1,036,314	+		AO356_04600	0.84	+0.1
1,036,314	+		AO356_04600	0.84	+1.8
1,036,314	+		AO356_04600	0.84	-0.8
1,036,314	+		AO356_04600	0.84	+0.1
1,036,314	+		AO356_04600	0.84	-0.5
1,036,315	-		AO356_04600	0.84	+0.3
1,036,315	-		AO356_04600	0.84	-0.9
1,036,315	-		AO356_04600	0.84	+2.2
1,036,315	-		AO356_04600	0.84	-0.6
1,036,315	-		AO356_04600	0.84	+0.3
1,036,315	-		AO356_04600	0.84	+0.7
1,036,351	+		AO356_04600	0.88	-1.0
1,036,351	+		AO356_04600	0.88	-1.0
1,036,351	+		AO356_04600	0.88	-2.3
1,036,352	-		AO356_04600	0.89	-1.8
1,036,352	-		AO356_04600	0.89	+1.9
1,036,352	-		AO356_04600	0.89	+1.3
1,036,440	+				-0.9
1,036,444	-				-2.4
1,036,463	+				+1.6
1,036,463	+				-0.0
1,036,463	+				-0.8
1,036,463	+				-1.3
1,036,463	+				-1.3
1,036,463	+				+0.7
1,036,463	+				+0.6
1,036,463	+				+1.3
1,036,463	+				+1.7
1,036,464	-				-1.0
1,036,464	-				-0.4
1,036,464	-				+0.2
1,036,464	-				+0.4
1,036,552	+				+0.3
1,036,631	-				-0.2
1,036,631	-				+1.1
1,036,631	-				+3.2
1,036,631	-				+0.9
1,036,762	-		AO356_04605	0.11	+0.4
1,037,233	+		AO356_04605	0.45	-0.3
1,037,489	+		AO356_04605	0.63	+1.0
1,037,490	-		AO356_04605	0.63	-0.7
1,037,629	-		AO356_04605	0.73	-0.7
1,037,640	+		AO356_04605	0.74	-0.2
1,037,640	+		AO356_04605	0.74	+1.2
1,037,640	+		AO356_04605	0.74	-2.5
1,037,640	+		AO356_04605	0.74	-0.4
1,037,640	+		AO356_04605	0.74	-0.8
1,037,640	+		AO356_04605	0.74	-1.0
1,037,641	-		AO356_04605	0.74	-0.1
1,037,641	-		AO356_04605	0.74	+2.7
1,037,641	-		AO356_04605	0.74	+1.1
1,037,641	-		AO356_04605	0.74	-1.9
1,037,641	-		AO356_04605	0.74	+0.3
1,037,641	-		AO356_04605	0.74	-1.3
1,037,641	-		AO356_04605	0.74	-2.0
1,037,661	+		AO356_04605	0.75	-0.7
1,037,748	+		AO356_04605	0.82	-0.2
1,037,749	-		AO356_04605	0.82	-1.7
1,037,749	-		AO356_04605	0.82	+0.9
1,037,749	-		AO356_04605	0.82	+0.9
1,037,751	+		AO356_04605	0.82	+1.8
1,037,751	+		AO356_04605	0.82	-2.8
1,037,752	-		AO356_04605	0.82	+1.0
1,037,772	+		AO356_04605	0.83	+2.0
1,037,773	-		AO356_04605	0.83	+2.2
1,037,796	+		AO356_04605	0.85	+1.0
1,037,797	-		AO356_04605	0.85	+0.6
1,037,881	-				-0.4
1,037,914	-				-1.4
1,037,942	+				-1.0
1,037,942	+				-0.7
1,037,943	-				-0.7
1,037,943	-				+0.6
1,037,998	+				+0.1
1,037,998	+				+1.4
1,037,999	-				-0.9
1,037,999	-				+0.2
1,037,999	-				+0.6
1,037,999	-				-0.5
1,038,022	+				+0.3
1,038,091	+		AO356_04610	0.14	+1.9
1,038,091	+		AO356_04610	0.14	+0.8
1,038,092	-		AO356_04610	0.14	-0.2
1,038,092	-		AO356_04610	0.14	-1.8
1,038,092	-		AO356_04610	0.14	-1.2
1,038,246	-		AO356_04610	0.37	-1.5
1,038,269	-		AO356_04610	0.40	-1.4
1,038,310	-		AO356_04610	0.47	+4.3
1,038,376	+		AO356_04610	0.56	+0.3
1,038,376	+		AO356_04610	0.56	+0.1
1,038,377	-		AO356_04610	0.57	+2.1
1,038,536	-		AO356_04610	0.80	-0.1
1,038,536	-		AO356_04610	0.80	+0.1
1,038,536	-		AO356_04610	0.80	-0.9
1,038,579	+		AO356_04610	0.87	+1.1
1,038,673	+				-3.0
1,038,673	+				+2.7
1,038,673	+				-2.0
1,038,720	+				+1.4
1,038,720	+				-2.1
1,038,795	+				-1.8
1,038,795	+				+0.2
1,038,795	+				+0.3
1,038,795	+				-2.4
1,038,795	+				+0.8
1,038,795	+				-0.3
1,038,795	+				+0.7
1,038,795	+				+0.3
1,038,795	+				-1.2
1,038,796	-				+1.0
1,038,796	-				+0.4
1,038,796	-				-0.6
1,038,796	-				-2.6
1,038,796	-				+0.8
1,038,877	+				-1.9
1,038,877	+				-1.7
1,038,877	+				-0.2
1,038,878	-				+2.5
1,038,878	-				+0.3
1,038,878	-				-0.7
1,038,886	+				+0.2
1,038,886	+				-0.2
1,038,887	-				-1.3
1,038,887	-				-0.7
1,038,916	-				+0.3