Experiment: Nitrate reduction with yeast extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04340 and AO356_04345 are separated by 318 nucleotides AO356_04345 and AO356_04350 are separated by 12 nucleotides AO356_04350 and AO356_04355 are separated by 32 nucleotides AO356_04355 and AO356_04360 are separated by 135 nucleotides
AO356_04340: AO356_04340 - MFS transporter, at 987,650 to 988,936
_04340
AO356_04345: AO356_04345 - hypothetical protein, at 989,255 to 989,797
_04345
AO356_04350: AO356_04350 - glutamine amidotransferase, at 989,810 to 990,586
_04350
AO356_04355: AO356_04355 - MFS transporter, at 990,619 to 991,116
_04355
AO356_04360: AO356_04360 - peptidase S9, at 991,252 to 993,306
_04360
Position (kb) 989
990
991 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 988.955 kb on + strand at 988.955 kb on + strand at 988.955 kb on + strand at 988.955 kb on + strand at 988.956 kb on - strand at 988.956 kb on - strand at 988.956 kb on - strand at 989.036 kb on - strand at 989.145 kb on + strand at 989.145 kb on + strand at 989.145 kb on + strand at 989.145 kb on + strand at 989.146 kb on - strand at 989.146 kb on - strand at 989.146 kb on - strand at 989.146 kb on - strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.161 kb on - strand at 989.161 kb on - strand at 989.161 kb on - strand at 989.161 kb on - strand at 989.161 kb on - strand at 989.161 kb on - strand at 989.180 kb on + strand at 989.180 kb on + strand at 989.181 kb on - strand at 989.181 kb on - strand at 989.181 kb on - strand at 989.219 kb on + strand at 989.220 kb on - strand at 989.220 kb on - strand at 989.421 kb on + strand, within AO356_04345 at 989.493 kb on + strand, within AO356_04345 at 989.493 kb on + strand, within AO356_04345 at 989.494 kb on - strand, within AO356_04345 at 989.494 kb on - strand, within AO356_04345 at 989.494 kb on - strand, within AO356_04345 at 989.494 kb on - strand, within AO356_04345 at 989.716 kb on - strand, within AO356_04345 at 989.780 kb on + strand at 989.780 kb on + strand at 989.781 kb on - strand at 989.781 kb on - strand at 989.784 kb on + strand at 989.784 kb on + strand at 989.784 kb on + strand at 989.784 kb on + strand at 989.784 kb on + strand at 989.785 kb on - strand at 989.797 kb on + strand at 989.797 kb on + strand at 989.797 kb on + strand at 989.797 kb on + strand at 989.797 kb on + strand at 989.798 kb on - strand at 989.798 kb on - strand at 989.798 kb on - strand at 989.811 kb on + strand at 990.039 kb on + strand, within AO356_04350 at 990.138 kb on - strand, within AO356_04350 at 990.225 kb on + strand, within AO356_04350 at 990.355 kb on + strand, within AO356_04350 at 990.366 kb on - strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.575 kb on + strand at 990.576 kb on - strand at 990.620 kb on + strand at 990.620 kb on + strand at 990.620 kb on + strand at 990.621 kb on - strand at 990.621 kb on - strand at 990.819 kb on - strand, within AO356_04355 at 990.843 kb on - strand, within AO356_04355 at 990.843 kb on - strand, within AO356_04355 at 990.843 kb on - strand, within AO356_04355 at 991.070 kb on + strand at 991.091 kb on + strand at 991.092 kb on - strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.141 kb on - strand at 991.141 kb on - strand at 991.141 kb on - strand at 991.141 kb on - strand at 991.142 kb on + strand at 991.142 kb on + strand at 991.142 kb on + strand at 991.142 kb on + strand at 991.142 kb on + strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.231 kb on + strand at 991.231 kb on + strand at 991.232 kb on - strand at 991.232 kb on - strand at 991.232 kb on - strand at 991.260 kb on - strand at 991.358 kb on - strand at 991.358 kb on - strand at 991.358 kb on - strand at 991.358 kb on - strand at 991.378 kb on + strand at 991.378 kb on + strand at 991.378 kb on + strand at 991.379 kb on - strand at 991.379 kb on - strand at 991.379 kb on - strand at 991.489 kb on + strand, within AO356_04360 at 991.490 kb on - strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.496 kb on - strand, within AO356_04360 at 991.498 kb on + strand, within AO356_04360 at 991.498 kb on + strand, within AO356_04360 at 991.498 kb on + strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction with yeast extract remove 988,955 + -1.4 988,955 + -2.3 988,955 + -0.1 988,955 + -1.2 988,956 - +0.8 988,956 - -2.1 988,956 - -2.1 989,036 - +0.4 989,145 + +1.1 989,145 + +1.6 989,145 + +1.9 989,145 + -1.3 989,146 - +1.5 989,146 - +0.7 989,146 - +1.3 989,146 - +1.0 989,160 + -0.6 989,160 + +0.6 989,160 + +0.3 989,160 + +1.0 989,160 + +0.1 989,160 + +0.6 989,160 + +0.5 989,160 + +0.9 989,160 + +3.0 989,160 + +1.2 989,160 + -3.1 989,160 + +2.9 989,161 - +0.4 989,161 - +1.2 989,161 - +0.1 989,161 - -0.2 989,161 - +0.9 989,161 - +1.0 989,180 + +0.7 989,180 + -0.4 989,181 - +0.5 989,181 - -0.7 989,181 - -0.5 989,219 + +1.1 989,220 - +0.6 989,220 - +0.3 989,421 + AO356_04345 0.31 -0.2 989,493 + AO356_04345 0.44 -0.7 989,493 + AO356_04345 0.44 +0.3 989,494 - AO356_04345 0.44 -1.1 989,494 - AO356_04345 0.44 -2.1 989,494 - AO356_04345 0.44 -0.5 989,494 - AO356_04345 0.44 -2.4 989,716 - AO356_04345 0.85 -2.4 989,780 + +1.3 989,780 + -1.5 989,781 - +0.9 989,781 - +0.1 989,784 + -0.4 989,784 + -1.7 989,784 + +0.7 989,784 + +0.7 989,784 + -0.3 989,785 - +1.8 989,797 + -1.3 989,797 + +0.6 989,797 + +2.1 989,797 + -1.8 989,797 + +0.3 989,798 - -0.7 989,798 - -0.6 989,798 - -0.6 989,811 + -0.4 990,039 + AO356_04350 0.29 -0.4 990,138 - AO356_04350 0.42 +0.2 990,225 + AO356_04350 0.53 -1.2 990,355 + AO356_04350 0.70 -1.3 990,366 - AO356_04350 0.72 +0.4 990,465 + AO356_04350 0.84 -1.3 990,465 + AO356_04350 0.84 +2.1 990,465 + AO356_04350 0.84 +1.0 990,465 + AO356_04350 0.84 +1.1 990,465 + AO356_04350 0.84 -1.6 990,465 + AO356_04350 0.84 +1.4 990,465 + AO356_04350 0.84 -0.2 990,465 + AO356_04350 0.84 +2.0 990,465 + AO356_04350 0.84 -1.3 990,466 - AO356_04350 0.84 +0.4 990,466 - AO356_04350 0.84 +0.6 990,466 - AO356_04350 0.84 -1.7 990,466 - AO356_04350 0.84 -2.0 990,466 - AO356_04350 0.84 -0.3 990,575 + +0.5 990,576 - -1.7 990,620 + +0.8 990,620 + +2.2 990,620 + -0.4 990,621 - +0.2 990,621 - +1.1 990,819 - AO356_04355 0.40 -1.2 990,843 - AO356_04355 0.45 -2.4 990,843 - AO356_04355 0.45 -0.7 990,843 - AO356_04355 0.45 -1.1 991,070 + -0.4 991,091 + -2.0 991,092 - -1.2 991,140 + +1.8 991,140 + -2.1 991,140 + -0.1 991,140 + +1.1 991,140 + -0.8 991,140 + +0.9 991,141 - +0.6 991,141 - -1.6 991,141 - -0.4 991,141 - +1.4 991,142 + -1.0 991,142 + +0.2 991,142 + +0.4 991,142 + -1.4 991,142 + -2.2 991,143 - -1.9 991,143 - +1.0 991,143 - -1.5 991,143 - +2.8 991,143 - -0.9 991,143 - -2.8 991,143 - -0.8 991,143 - +0.9 991,143 - +3.1 991,143 - -2.1 991,143 - -1.7 991,231 + +0.4 991,231 + -1.5 991,232 - -1.4 991,232 - -0.4 991,232 - -1.8 991,260 - -1.2 991,358 - +0.6 991,358 - +0.5 991,358 - +0.8 991,358 - +1.5 991,378 + -2.4 991,378 + -1.4 991,378 + +1.2 991,379 - -0.4 991,379 - -1.8 991,379 - +1.7 991,489 + AO356_04360 0.12 +1.0 991,490 - AO356_04360 0.12 +1.1 991,495 + AO356_04360 0.12 +0.2 991,495 + AO356_04360 0.12 -3.1 991,495 + AO356_04360 0.12 -1.2 991,495 + AO356_04360 0.12 +2.0 991,495 + AO356_04360 0.12 +1.2 991,496 - AO356_04360 0.12 -0.9 991,498 + AO356_04360 0.12 +0.0 991,498 + AO356_04360 0.12 +0.7 991,498 + AO356_04360 0.12 +0.4 991,499 - AO356_04360 0.12 +2.3 991,499 - AO356_04360 0.12 -0.4 991,499 - AO356_04360 0.12 +0.2 991,499 - AO356_04360 0.12 -1.7 991,499 - AO356_04360 0.12 +1.4
Or see this region's nucleotide sequence