Experiment: Nitrate reduction with yeast extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04105 and AO356_04110 are separated by 223 nucleotides AO356_04110 and AO356_04115 are separated by 476 nucleotides
AO356_04105: AO356_04105 - nitrate reductase, at 922,547 to 924,055
_04105
AO356_04110: AO356_04110 - sodium:solute symporter, at 924,279 to 925,667
_04110
AO356_04115: AO356_04115 - LysR family transcriptional regulator, at 926,144 to 927,037
_04115
Position (kb) 924
925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 923.384 kb on + strand, within AO356_04105 at 923.384 kb on + strand, within AO356_04105 at 923.384 kb on + strand, within AO356_04105 at 923.385 kb on - strand, within AO356_04105 at 923.402 kb on + strand, within AO356_04105 at 923.403 kb on - strand, within AO356_04105 at 923.501 kb on + strand, within AO356_04105 at 923.501 kb on + strand, within AO356_04105 at 923.502 kb on - strand, within AO356_04105 at 923.502 kb on - strand, within AO356_04105 at 923.720 kb on + strand, within AO356_04105 at 923.720 kb on + strand, within AO356_04105 at 923.721 kb on - strand, within AO356_04105 at 923.721 kb on - strand, within AO356_04105 at 923.721 kb on - strand, within AO356_04105 at 923.942 kb on + strand at 923.942 kb on + strand at 923.943 kb on - strand at 923.943 kb on - strand at 923.982 kb on + strand at 923.982 kb on + strand at 923.983 kb on - strand at 923.984 kb on + strand at 923.984 kb on + strand at 923.984 kb on + strand at 923.985 kb on - strand at 924.028 kb on + strand at 924.249 kb on + strand at 924.250 kb on - strand at 924.250 kb on - strand at 924.250 kb on - strand at 924.292 kb on + strand at 924.292 kb on + strand at 924.292 kb on + strand at 924.292 kb on + strand at 924.293 kb on - strand at 924.309 kb on + strand at 924.309 kb on + strand at 924.310 kb on - strand at 924.310 kb on - strand at 924.310 kb on - strand at 924.340 kb on - strand at 924.372 kb on + strand at 924.372 kb on + strand at 924.373 kb on - strand at 924.373 kb on - strand at 924.408 kb on + strand at 924.409 kb on - strand at 924.409 kb on - strand at 924.409 kb on - strand at 924.409 kb on - strand at 924.412 kb on + strand at 924.412 kb on + strand at 924.412 kb on + strand at 924.412 kb on + strand at 924.413 kb on - strand at 924.413 kb on - strand at 924.413 kb on - strand at 924.474 kb on + strand, within AO356_04110 at 924.480 kb on + strand, within AO356_04110 at 924.576 kb on + strand, within AO356_04110 at 924.576 kb on + strand, within AO356_04110 at 924.577 kb on - strand, within AO356_04110 at 924.577 kb on - strand, within AO356_04110 at 924.607 kb on - strand, within AO356_04110 at 924.607 kb on - strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.651 kb on + strand, within AO356_04110 at 924.652 kb on - strand, within AO356_04110 at 924.652 kb on - strand, within AO356_04110 at 924.652 kb on - strand, within AO356_04110 at 924.652 kb on - strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.765 kb on + strand, within AO356_04110 at 924.766 kb on - strand, within AO356_04110 at 924.915 kb on + strand, within AO356_04110 at 924.915 kb on + strand, within AO356_04110 at 924.916 kb on - strand, within AO356_04110 at 924.957 kb on + strand, within AO356_04110 at 924.957 kb on + strand, within AO356_04110 at 924.958 kb on - strand, within AO356_04110 at 924.958 kb on - strand, within AO356_04110 at 924.969 kb on + strand, within AO356_04110 at 924.969 kb on + strand, within AO356_04110 at 924.970 kb on - strand, within AO356_04110 at 925.068 kb on + strand, within AO356_04110 at 925.081 kb on - strand, within AO356_04110 at 925.425 kb on + strand, within AO356_04110 at 925.426 kb on - strand, within AO356_04110 at 925.426 kb on - strand, within AO356_04110 at 925.474 kb on - strand, within AO356_04110 at 925.582 kb on - strand at 925.582 kb on - strand at 925.582 kb on - strand at 925.584 kb on + strand at 925.584 kb on + strand at 925.584 kb on + strand at 925.585 kb on - strand at 925.726 kb on + strand at 925.727 kb on - strand at 925.727 kb on - strand at 925.753 kb on + strand at 925.753 kb on + strand at 925.873 kb on + strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.878 kb on - strand at 926.062 kb on + strand at 926.063 kb on - strand at 926.063 kb on - strand at 926.065 kb on + strand at 926.065 kb on + strand at 926.066 kb on - strand at 926.078 kb on + strand at 926.078 kb on + strand at 926.079 kb on - strand at 926.112 kb on + strand at 926.113 kb on - strand at 926.113 kb on - strand at 926.386 kb on - strand, within AO356_04115 at 926.445 kb on - strand, within AO356_04115
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction with yeast extract remove 923,384 + AO356_04105 0.55 +0.0 923,384 + AO356_04105 0.55 +0.1 923,384 + AO356_04105 0.55 +2.9 923,385 - AO356_04105 0.56 +1.1 923,402 + AO356_04105 0.57 -0.8 923,403 - AO356_04105 0.57 -2.9 923,501 + AO356_04105 0.63 -0.9 923,501 + AO356_04105 0.63 +0.8 923,502 - AO356_04105 0.63 -1.3 923,502 - AO356_04105 0.63 -0.5 923,720 + AO356_04105 0.78 +0.1 923,720 + AO356_04105 0.78 +0.2 923,721 - AO356_04105 0.78 +1.3 923,721 - AO356_04105 0.78 -2.4 923,721 - AO356_04105 0.78 -1.0 923,942 + +0.7 923,942 + -0.7 923,943 - -1.3 923,943 - -0.6 923,982 + +1.0 923,982 + +1.9 923,983 - +0.4 923,984 + +1.4 923,984 + +1.7 923,984 + -1.8 923,985 - -1.8 924,028 + +1.8 924,249 + -1.1 924,250 - -1.4 924,250 - -0.5 924,250 - +1.4 924,292 + -1.4 924,292 + -0.5 924,292 + +2.0 924,292 + -1.4 924,293 - +0.6 924,309 + -1.0 924,309 + +1.9 924,310 - -0.1 924,310 - +0.1 924,310 - +3.1 924,340 - +1.4 924,372 + -0.1 924,372 + -1.2 924,373 - +0.7 924,373 - +1.5 924,408 + -2.3 924,409 - +2.7 924,409 - -0.2 924,409 - -0.6 924,409 - -2.8 924,412 + +1.3 924,412 + +2.9 924,412 + +0.2 924,412 + +2.1 924,413 - +0.9 924,413 - -0.2 924,413 - +0.7 924,474 + AO356_04110 0.14 +1.2 924,480 + AO356_04110 0.14 -0.2 924,576 + AO356_04110 0.21 -1.2 924,576 + AO356_04110 0.21 +0.1 924,577 - AO356_04110 0.21 -0.9 924,577 - AO356_04110 0.21 +0.9 924,607 - AO356_04110 0.24 +1.4 924,607 - AO356_04110 0.24 +1.3 924,651 + AO356_04110 0.27 +0.8 924,651 + AO356_04110 0.27 +1.2 924,651 + AO356_04110 0.27 +0.8 924,651 + AO356_04110 0.27 -1.1 924,651 + AO356_04110 0.27 -0.6 924,652 - AO356_04110 0.27 +0.4 924,652 - AO356_04110 0.27 -2.8 924,652 - AO356_04110 0.27 -1.3 924,652 - AO356_04110 0.27 +2.3 924,765 + AO356_04110 0.35 +1.6 924,765 + AO356_04110 0.35 +0.8 924,765 + AO356_04110 0.35 -2.5 924,765 + AO356_04110 0.35 -1.4 924,765 + AO356_04110 0.35 +0.2 924,766 - AO356_04110 0.35 +2.2 924,915 + AO356_04110 0.46 -1.4 924,915 + AO356_04110 0.46 +2.3 924,916 - AO356_04110 0.46 -1.6 924,957 + AO356_04110 0.49 +0.1 924,957 + AO356_04110 0.49 +1.1 924,958 - AO356_04110 0.49 +0.9 924,958 - AO356_04110 0.49 +0.9 924,969 + AO356_04110 0.50 +0.6 924,969 + AO356_04110 0.50 +0.1 924,970 - AO356_04110 0.50 +0.1 925,068 + AO356_04110 0.57 +1.4 925,081 - AO356_04110 0.58 +1.5 925,425 + AO356_04110 0.83 +1.8 925,426 - AO356_04110 0.83 -0.5 925,426 - AO356_04110 0.83 +1.9 925,474 - AO356_04110 0.86 -0.4 925,582 - -0.4 925,582 - +0.6 925,582 - +1.8 925,584 + +0.9 925,584 + +1.4 925,584 + +1.5 925,585 - +0.5 925,726 + +0.4 925,727 - -0.6 925,727 - -0.5 925,753 + +0.9 925,753 + +0.2 925,873 + -1.6 925,874 - +2.2 925,874 - -0.1 925,874 - +0.5 925,874 - -1.1 925,874 - -0.6 925,874 - +2.2 925,874 - +0.7 925,874 - -0.4 925,874 - -0.8 925,874 - +0.3 925,874 - +1.3 925,874 - -0.3 925,874 - -1.6 925,874 - -0.5 925,874 - -2.1 925,878 - -1.7 926,062 + +0.7 926,063 - -2.5 926,063 - -2.1 926,065 + +0.5 926,065 + +2.1 926,066 - -0.5 926,078 + +1.4 926,078 + +0.4 926,079 - -1.4 926,112 + -1.4 926,113 - +0.7 926,113 - +1.6 926,386 - AO356_04115 0.27 +0.1 926,445 - AO356_04115 0.34 +1.5
Or see this region's nucleotide sequence