Experiment: Nitrate reduction with yeast extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04095 and AO356_04100 are separated by 9 nucleotides AO356_04100 and AO356_04105 are separated by 52 nucleotides
AO356_04095: AO356_04095 - agmatinase, at 921,127 to 922,077
_04095
AO356_04100: AO356_04100 - ketosteroid isomerase, at 922,087 to 922,494
_04100
AO356_04105: AO356_04105 - nitrate reductase, at 922,547 to 924,055
_04105
Position (kb) 922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 921.099 kb on + strand at 921.099 kb on + strand at 921.103 kb on + strand at 921.103 kb on + strand at 921.122 kb on + strand at 921.122 kb on + strand at 921.123 kb on - strand at 921.337 kb on + strand, within AO356_04095 at 921.451 kb on + strand, within AO356_04095 at 921.452 kb on - strand, within AO356_04095 at 921.537 kb on + strand, within AO356_04095 at 921.538 kb on - strand, within AO356_04095 at 921.538 kb on - strand, within AO356_04095 at 921.538 kb on - strand, within AO356_04095 at 921.550 kb on - strand, within AO356_04095 at 921.703 kb on + strand, within AO356_04095 at 921.704 kb on - strand, within AO356_04095 at 921.704 kb on - strand, within AO356_04095 at 921.832 kb on + strand, within AO356_04095 at 921.833 kb on - strand, within AO356_04095 at 921.975 kb on - strand, within AO356_04095 at 922.036 kb on + strand at 922.037 kb on - strand at 922.037 kb on - strand at 922.053 kb on - strand at 922.162 kb on + strand, within AO356_04100 at 922.162 kb on + strand, within AO356_04100 at 922.163 kb on - strand, within AO356_04100 at 922.201 kb on + strand, within AO356_04100 at 922.201 kb on + strand, within AO356_04100 at 922.202 kb on - strand, within AO356_04100 at 922.237 kb on + strand, within AO356_04100 at 922.492 kb on + strand at 922.492 kb on + strand at 922.552 kb on + strand at 922.552 kb on + strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.558 kb on + strand at 922.558 kb on + strand at 922.564 kb on + strand at 922.564 kb on + strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.669 kb on + strand at 922.669 kb on + strand at 922.669 kb on + strand at 922.670 kb on - strand at 922.670 kb on - strand at 923.036 kb on + strand, within AO356_04105 at 923.036 kb on + strand, within AO356_04105 at 923.036 kb on + strand, within AO356_04105 at 923.037 kb on - strand, within AO356_04105 at 923.177 kb on + strand, within AO356_04105 at 923.205 kb on + strand, within AO356_04105 at 923.259 kb on - strand, within AO356_04105 at 923.259 kb on - strand, within AO356_04105 at 923.259 kb on - strand, within AO356_04105 at 923.384 kb on + strand, within AO356_04105 at 923.384 kb on + strand, within AO356_04105 at 923.384 kb on + strand, within AO356_04105 at 923.385 kb on - strand, within AO356_04105 at 923.402 kb on + strand, within AO356_04105 at 923.403 kb on - strand, within AO356_04105
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction with yeast extract remove 921,099 + -0.9 921,099 + +0.0 921,103 + +1.4 921,103 + +1.4 921,122 + -0.9 921,122 + +0.3 921,123 - -2.9 921,337 + AO356_04095 0.22 -1.2 921,451 + AO356_04095 0.34 +1.8 921,452 - AO356_04095 0.34 -1.6 921,537 + AO356_04095 0.43 +0.4 921,538 - AO356_04095 0.43 -0.4 921,538 - AO356_04095 0.43 +0.7 921,538 - AO356_04095 0.43 +0.6 921,550 - AO356_04095 0.44 +0.2 921,703 + AO356_04095 0.61 +0.1 921,704 - AO356_04095 0.61 +2.1 921,704 - AO356_04095 0.61 -0.9 921,832 + AO356_04095 0.74 -0.4 921,833 - AO356_04095 0.74 +1.0 921,975 - AO356_04095 0.89 -1.0 922,036 + +0.4 922,037 - +3.1 922,037 - -2.5 922,053 - +0.7 922,162 + AO356_04100 0.18 +2.4 922,162 + AO356_04100 0.18 -0.2 922,163 - AO356_04100 0.19 -1.2 922,201 + AO356_04100 0.28 -0.2 922,201 + AO356_04100 0.28 +0.0 922,202 - AO356_04100 0.28 +0.5 922,237 + AO356_04100 0.37 +1.3 922,492 + +0.9 922,492 + -0.4 922,552 + +0.0 922,552 + +2.3 922,553 - -0.6 922,553 - -0.8 922,553 - +0.6 922,553 - -0.3 922,553 - +1.3 922,553 - -0.9 922,553 - +0.0 922,553 - -0.1 922,558 + -1.4 922,558 + -1.0 922,564 + -0.5 922,564 + -1.6 922,565 - +1.6 922,565 - +1.4 922,565 - +0.5 922,565 - +0.6 922,565 - +1.4 922,565 - +1.1 922,565 - +0.1 922,669 + -0.4 922,669 + -1.1 922,669 + -0.6 922,670 - -1.7 922,670 - -0.2 923,036 + AO356_04105 0.32 +1.5 923,036 + AO356_04105 0.32 +0.4 923,036 + AO356_04105 0.32 +1.6 923,037 - AO356_04105 0.32 -0.2 923,177 + AO356_04105 0.42 -0.9 923,205 + AO356_04105 0.44 -0.2 923,259 - AO356_04105 0.47 -0.6 923,259 - AO356_04105 0.47 +0.2 923,259 - AO356_04105 0.47 -1.3 923,384 + AO356_04105 0.55 +0.0 923,384 + AO356_04105 0.55 +0.1 923,384 + AO356_04105 0.55 +2.9 923,385 - AO356_04105 0.56 +1.1 923,402 + AO356_04105 0.57 -0.8 923,403 - AO356_04105 0.57 -2.9
Or see this region's nucleotide sequence