Experiment: Nitrate reduction with yeast extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04090 and AO356_04095 are separated by 310 nucleotides AO356_04095 and AO356_04100 are separated by 9 nucleotides AO356_04100 and AO356_04105 are separated by 52 nucleotides
AO356_04090: AO356_04090 - LysR family transcriptional regulator, at 919,923 to 920,816
_04090
AO356_04095: AO356_04095 - agmatinase, at 921,127 to 922,077
_04095
AO356_04100: AO356_04100 - ketosteroid isomerase, at 922,087 to 922,494
_04100
AO356_04105: AO356_04105 - nitrate reductase, at 922,547 to 924,055
_04105
Position (kb) 921
922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 920.290 kb on + strand, within AO356_04090 at 920.290 kb on + strand, within AO356_04090 at 920.290 kb on + strand, within AO356_04090 at 920.290 kb on + strand, within AO356_04090 at 920.291 kb on - strand, within AO356_04090 at 920.291 kb on - strand, within AO356_04090 at 920.291 kb on - strand, within AO356_04090 at 920.311 kb on + strand, within AO356_04090 at 920.311 kb on + strand, within AO356_04090 at 920.323 kb on + strand, within AO356_04090 at 920.323 kb on + strand, within AO356_04090 at 920.324 kb on - strand, within AO356_04090 at 920.324 kb on - strand, within AO356_04090 at 920.405 kb on - strand, within AO356_04090 at 920.455 kb on + strand, within AO356_04090 at 920.529 kb on - strand, within AO356_04090 at 920.561 kb on - strand, within AO356_04090 at 920.561 kb on - strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.698 kb on + strand, within AO356_04090 at 920.699 kb on - strand, within AO356_04090 at 920.699 kb on - strand, within AO356_04090 at 920.699 kb on - strand, within AO356_04090 at 920.699 kb on - strand, within AO356_04090 at 920.699 kb on - strand, within AO356_04090 at 920.830 kb on + strand at 920.831 kb on - strand at 920.831 kb on - strand at 920.867 kb on + strand at 920.867 kb on + strand at 920.867 kb on + strand at 920.867 kb on + strand at 920.867 kb on + strand at 920.867 kb on + strand at 920.867 kb on + strand at 920.868 kb on - strand at 920.868 kb on - strand at 920.868 kb on - strand at 920.868 kb on - strand at 920.868 kb on - strand at 920.976 kb on + strand at 920.976 kb on + strand at 920.977 kb on - strand at 921.040 kb on + strand at 921.040 kb on + strand at 921.045 kb on - strand at 921.099 kb on + strand at 921.099 kb on + strand at 921.103 kb on + strand at 921.103 kb on + strand at 921.122 kb on + strand at 921.122 kb on + strand at 921.123 kb on - strand at 921.337 kb on + strand, within AO356_04095 at 921.451 kb on + strand, within AO356_04095 at 921.452 kb on - strand, within AO356_04095 at 921.537 kb on + strand, within AO356_04095 at 921.538 kb on - strand, within AO356_04095 at 921.538 kb on - strand, within AO356_04095 at 921.538 kb on - strand, within AO356_04095 at 921.550 kb on - strand, within AO356_04095 at 921.703 kb on + strand, within AO356_04095 at 921.704 kb on - strand, within AO356_04095 at 921.704 kb on - strand, within AO356_04095 at 921.832 kb on + strand, within AO356_04095 at 921.833 kb on - strand, within AO356_04095 at 921.975 kb on - strand, within AO356_04095 at 922.036 kb on + strand at 922.037 kb on - strand at 922.037 kb on - strand at 922.053 kb on - strand at 922.162 kb on + strand, within AO356_04100 at 922.162 kb on + strand, within AO356_04100 at 922.163 kb on - strand, within AO356_04100 at 922.201 kb on + strand, within AO356_04100 at 922.201 kb on + strand, within AO356_04100 at 922.202 kb on - strand, within AO356_04100 at 922.237 kb on + strand, within AO356_04100 at 922.492 kb on + strand at 922.492 kb on + strand at 922.552 kb on + strand at 922.552 kb on + strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.558 kb on + strand at 922.558 kb on + strand at 922.564 kb on + strand at 922.564 kb on + strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.669 kb on + strand at 922.669 kb on + strand at 922.669 kb on + strand at 922.670 kb on - strand at 922.670 kb on - strand at 923.036 kb on + strand, within AO356_04105 at 923.036 kb on + strand, within AO356_04105 at 923.036 kb on + strand, within AO356_04105 at 923.037 kb on - strand, within AO356_04105
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction with yeast extract remove 920,290 + AO356_04090 0.41 +0.7 920,290 + AO356_04090 0.41 -0.8 920,290 + AO356_04090 0.41 +2.3 920,290 + AO356_04090 0.41 -1.6 920,291 - AO356_04090 0.41 +1.1 920,291 - AO356_04090 0.41 +1.6 920,291 - AO356_04090 0.41 -0.2 920,311 + AO356_04090 0.43 +0.7 920,311 + AO356_04090 0.43 +0.8 920,323 + AO356_04090 0.45 -2.2 920,323 + AO356_04090 0.45 -0.1 920,324 - AO356_04090 0.45 +0.8 920,324 - AO356_04090 0.45 -1.1 920,405 - AO356_04090 0.54 +1.6 920,455 + AO356_04090 0.60 +1.1 920,529 - AO356_04090 0.68 -0.8 920,561 - AO356_04090 0.71 -1.9 920,561 - AO356_04090 0.71 +1.8 920,698 + AO356_04090 0.87 +1.3 920,698 + AO356_04090 0.87 -0.8 920,698 + AO356_04090 0.87 +0.8 920,698 + AO356_04090 0.87 +2.1 920,698 + AO356_04090 0.87 +1.8 920,698 + AO356_04090 0.87 -1.6 920,698 + AO356_04090 0.87 +2.5 920,698 + AO356_04090 0.87 -1.4 920,698 + AO356_04090 0.87 -2.0 920,698 + AO356_04090 0.87 +0.7 920,699 - AO356_04090 0.87 -0.8 920,699 - AO356_04090 0.87 +2.1 920,699 - AO356_04090 0.87 +2.4 920,699 - AO356_04090 0.87 -2.4 920,699 - AO356_04090 0.87 -1.1 920,830 + +0.4 920,831 - +1.7 920,831 - +0.9 920,867 + +0.9 920,867 + -0.4 920,867 + -1.6 920,867 + +2.2 920,867 + -0.8 920,867 + +0.2 920,867 + +2.0 920,868 - +1.1 920,868 - +0.6 920,868 - +0.1 920,868 - -1.2 920,868 - +0.3 920,976 + +2.5 920,976 + +0.0 920,977 - -0.8 921,040 + +0.1 921,040 + +0.6 921,045 - +1.5 921,099 + -0.9 921,099 + +0.0 921,103 + +1.4 921,103 + +1.4 921,122 + -0.9 921,122 + +0.3 921,123 - -2.9 921,337 + AO356_04095 0.22 -1.2 921,451 + AO356_04095 0.34 +1.8 921,452 - AO356_04095 0.34 -1.6 921,537 + AO356_04095 0.43 +0.4 921,538 - AO356_04095 0.43 -0.4 921,538 - AO356_04095 0.43 +0.7 921,538 - AO356_04095 0.43 +0.6 921,550 - AO356_04095 0.44 +0.2 921,703 + AO356_04095 0.61 +0.1 921,704 - AO356_04095 0.61 +2.1 921,704 - AO356_04095 0.61 -0.9 921,832 + AO356_04095 0.74 -0.4 921,833 - AO356_04095 0.74 +1.0 921,975 - AO356_04095 0.89 -1.0 922,036 + +0.4 922,037 - +3.1 922,037 - -2.5 922,053 - +0.7 922,162 + AO356_04100 0.18 +2.4 922,162 + AO356_04100 0.18 -0.2 922,163 - AO356_04100 0.19 -1.2 922,201 + AO356_04100 0.28 -0.2 922,201 + AO356_04100 0.28 +0.0 922,202 - AO356_04100 0.28 +0.5 922,237 + AO356_04100 0.37 +1.3 922,492 + +0.9 922,492 + -0.4 922,552 + +0.0 922,552 + +2.3 922,553 - -0.6 922,553 - -0.8 922,553 - +0.6 922,553 - -0.3 922,553 - +1.3 922,553 - -0.9 922,553 - +0.0 922,553 - -0.1 922,558 + -1.4 922,558 + -1.0 922,564 + -0.5 922,564 + -1.6 922,565 - +1.6 922,565 - +1.4 922,565 - +0.5 922,565 - +0.6 922,565 - +1.4 922,565 - +1.1 922,565 - +0.1 922,669 + -0.4 922,669 + -1.1 922,669 + -0.6 922,670 - -1.7 922,670 - -0.2 923,036 + AO356_04105 0.32 +1.5 923,036 + AO356_04105 0.32 +0.4 923,036 + AO356_04105 0.32 +1.6 923,037 - AO356_04105 0.32 -0.2
Or see this region's nucleotide sequence