Experiment: Nitrate reduction with yeast extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03245 and AO356_03250 are separated by 249 nucleotides AO356_03250 and AO356_03255 are separated by 100 nucleotides AO356_03255 and AO356_03260 are separated by 235 nucleotides
AO356_03245: AO356_03245 - hypothetical protein, at 720,210 to 720,518
_03245
AO356_03250: AO356_03250 - DoxX family protein, at 720,768 to 721,202
_03250
AO356_03255: AO356_03255 - glycosylase, at 721,303 to 722,724
_03255
AO356_03260: AO356_03260 - hydrolase TatD, at 722,960 to 723,766
_03260
Position (kb) 721
722
723 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 720.410 kb on - strand, within AO356_03245 at 720.410 kb on - strand, within AO356_03245 at 720.495 kb on + strand at 720.495 kb on + strand at 720.495 kb on + strand at 720.495 kb on + strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.616 kb on - strand at 720.652 kb on + strand at 720.652 kb on + strand at 720.652 kb on + strand at 720.653 kb on - strand at 720.653 kb on - strand at 720.653 kb on - strand at 720.660 kb on + strand at 720.660 kb on + strand at 720.684 kb on + strand at 720.685 kb on - strand at 720.723 kb on + strand at 720.736 kb on + strand at 720.736 kb on + strand at 720.736 kb on + strand at 720.737 kb on - strand at 720.737 kb on - strand at 720.827 kb on + strand, within AO356_03250 at 720.828 kb on - strand, within AO356_03250 at 720.860 kb on - strand, within AO356_03250 at 721.021 kb on + strand, within AO356_03250 at 721.021 kb on + strand, within AO356_03250 at 721.021 kb on + strand, within AO356_03250 at 721.022 kb on - strand, within AO356_03250 at 721.122 kb on + strand, within AO356_03250 at 721.122 kb on + strand, within AO356_03250 at 721.123 kb on - strand, within AO356_03250 at 721.123 kb on - strand, within AO356_03250 at 721.123 kb on - strand, within AO356_03250 at 721.123 kb on - strand, within AO356_03250 at 721.202 kb on + strand at 721.202 kb on + strand at 721.203 kb on - strand at 721.203 kb on - strand at 721.203 kb on - strand at 721.203 kb on - strand at 721.221 kb on + strand at 721.221 kb on + strand at 721.222 kb on - strand at 721.222 kb on - strand at 721.222 kb on - strand at 721.225 kb on - strand at 721.309 kb on - strand at 721.370 kb on + strand at 721.370 kb on + strand at 721.371 kb on - strand at 721.371 kb on - strand at 721.371 kb on - strand at 721.373 kb on + strand at 721.374 kb on - strand at 721.374 kb on - strand at 721.377 kb on + strand at 721.377 kb on + strand at 721.377 kb on + strand at 721.377 kb on + strand at 721.377 kb on + strand at 721.378 kb on - strand at 721.378 kb on - strand at 721.386 kb on + strand at 721.387 kb on - strand at 721.389 kb on + strand at 721.389 kb on + strand at 721.389 kb on + strand at 721.389 kb on + strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.395 kb on - strand at 721.395 kb on - strand at 721.395 kb on - strand at 721.395 kb on - strand at 721.395 kb on - strand at 721.414 kb on + strand at 721.414 kb on + strand at 721.415 kb on - strand at 721.523 kb on + strand, within AO356_03255 at 721.524 kb on - strand, within AO356_03255 at 721.524 kb on - strand, within AO356_03255 at 721.524 kb on - strand, within AO356_03255 at 721.604 kb on + strand, within AO356_03255 at 721.604 kb on + strand, within AO356_03255 at 721.604 kb on + strand, within AO356_03255 at 721.604 kb on + strand, within AO356_03255 at 721.621 kb on + strand, within AO356_03255 at 721.621 kb on + strand, within AO356_03255 at 721.622 kb on - strand, within AO356_03255 at 721.622 kb on - strand, within AO356_03255 at 721.865 kb on + strand, within AO356_03255 at 721.865 kb on + strand, within AO356_03255 at 721.866 kb on - strand, within AO356_03255 at 721.877 kb on + strand, within AO356_03255 at 721.877 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.920 kb on - strand, within AO356_03255 at 721.920 kb on - strand, within AO356_03255 at 721.920 kb on - strand, within AO356_03255 at 721.920 kb on - strand, within AO356_03255 at 721.983 kb on - strand, within AO356_03255 at 722.008 kb on + strand, within AO356_03255 at 722.008 kb on + strand, within AO356_03255 at 722.008 kb on + strand, within AO356_03255 at 722.009 kb on - strand, within AO356_03255 at 722.133 kb on + strand, within AO356_03255 at 722.134 kb on - strand, within AO356_03255 at 722.270 kb on + strand, within AO356_03255 at 722.317 kb on - strand, within AO356_03255 at 722.451 kb on + strand, within AO356_03255 at 722.452 kb on - strand, within AO356_03255 at 722.452 kb on - strand, within AO356_03255 at 722.452 kb on - strand, within AO356_03255 at 722.486 kb on + strand, within AO356_03255 at 722.486 kb on + strand, within AO356_03255 at 722.486 kb on + strand, within AO356_03255 at 722.487 kb on - strand, within AO356_03255 at 722.487 kb on - strand, within AO356_03255 at 722.487 kb on - strand, within AO356_03255 at 722.701 kb on + strand at 722.701 kb on + strand at 722.701 kb on + strand at 722.701 kb on + strand at 722.702 kb on - strand at 722.702 kb on - strand at 722.702 kb on - strand at 722.707 kb on + strand at 722.707 kb on + strand at 722.707 kb on + strand at 722.707 kb on + strand at 722.707 kb on + strand at 722.707 kb on + strand at 722.707 kb on + strand at 722.708 kb on - strand at 722.708 kb on - strand at 722.708 kb on - strand at 722.708 kb on - strand at 722.708 kb on - strand at 722.708 kb on - strand at 722.840 kb on + strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.843 kb on - strand at 722.851 kb on + strand at 722.851 kb on + strand at 722.852 kb on - strand at 722.852 kb on - strand at 722.852 kb on - strand at 722.852 kb on - strand at 722.852 kb on - strand at 722.891 kb on + strand at 722.892 kb on - strand at 722.927 kb on + strand at 722.953 kb on + strand at 722.954 kb on - strand at 723.038 kb on + strand at 723.038 kb on + strand at 723.038 kb on + strand at 723.039 kb on - strand at 723.342 kb on + strand, within AO356_03260 at 723.467 kb on + strand, within AO356_03260 at 723.487 kb on + strand, within AO356_03260 at 723.487 kb on + strand, within AO356_03260 at 723.487 kb on + strand, within AO356_03260 at 723.488 kb on - strand, within AO356_03260 at 723.488 kb on - strand, within AO356_03260 at 723.493 kb on + strand, within AO356_03260 at 723.494 kb on - strand, within AO356_03260 at 723.494 kb on - strand, within AO356_03260 at 723.494 kb on - strand, within AO356_03260 at 723.494 kb on - strand, within AO356_03260 at 723.555 kb on + strand, within AO356_03260 at 723.594 kb on - strand, within AO356_03260 at 723.607 kb on + strand, within AO356_03260 at 723.650 kb on + strand, within AO356_03260 at 723.651 kb on - strand, within AO356_03260
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction with yeast extract remove 720,410 - AO356_03245 0.65 -0.1 720,410 - AO356_03245 0.65 -0.1 720,495 + +1.9 720,495 + +1.3 720,495 + -2.8 720,495 + -1.2 720,496 - +1.1 720,496 - +2.1 720,496 - -1.3 720,496 - +1.7 720,496 - +2.3 720,496 - +1.2 720,496 - +1.1 720,616 - -1.2 720,652 + -0.7 720,652 + +0.1 720,652 + +0.3 720,653 - +1.1 720,653 - -0.8 720,653 - -1.1 720,660 + +0.6 720,660 + +1.9 720,684 + +0.6 720,685 - +0.9 720,723 + +1.2 720,736 + +2.4 720,736 + -0.4 720,736 + -0.9 720,737 - +2.0 720,737 - +0.1 720,827 + AO356_03250 0.14 +0.2 720,828 - AO356_03250 0.14 +1.5 720,860 - AO356_03250 0.21 +1.3 721,021 + AO356_03250 0.58 -0.0 721,021 + AO356_03250 0.58 -0.8 721,021 + AO356_03250 0.58 -2.3 721,022 - AO356_03250 0.58 +1.1 721,122 + AO356_03250 0.81 -2.5 721,122 + AO356_03250 0.81 +0.4 721,123 - AO356_03250 0.82 +1.6 721,123 - AO356_03250 0.82 -1.8 721,123 - AO356_03250 0.82 -0.0 721,123 - AO356_03250 0.82 +0.5 721,202 + -1.9 721,202 + +0.4 721,203 - +0.9 721,203 - +1.3 721,203 - -0.5 721,203 - -1.0 721,221 + -1.0 721,221 + -0.1 721,222 - -2.9 721,222 - +0.5 721,222 - +0.4 721,225 - -1.5 721,309 - -1.8 721,370 + +1.0 721,370 + -1.1 721,371 - +0.2 721,371 - -0.5 721,371 - +1.6 721,373 + -2.7 721,374 - -1.4 721,374 - +1.3 721,377 + +0.9 721,377 + +1.1 721,377 + +1.0 721,377 + +0.0 721,377 + +1.0 721,378 - +1.4 721,378 - +1.8 721,386 + +1.0 721,387 - +0.3 721,389 + -0.7 721,389 + +0.7 721,389 + -1.7 721,389 + -0.5 721,390 - +0.7 721,390 - -1.7 721,390 - -0.3 721,390 - +2.6 721,390 - -0.4 721,390 - -2.4 721,394 + +2.4 721,394 + +0.7 721,394 + -1.3 721,394 + +1.3 721,394 + -2.3 721,394 + +1.7 721,395 - +1.4 721,395 - +0.0 721,395 - -0.5 721,395 - +2.5 721,395 - +0.4 721,414 + +1.8 721,414 + +1.9 721,415 - +0.5 721,523 + AO356_03255 0.15 +0.9 721,524 - AO356_03255 0.16 +0.5 721,524 - AO356_03255 0.16 -0.1 721,524 - AO356_03255 0.16 -0.6 721,604 + AO356_03255 0.21 -2.5 721,604 + AO356_03255 0.21 -1.4 721,604 + AO356_03255 0.21 -0.1 721,604 + AO356_03255 0.21 +0.6 721,621 + AO356_03255 0.22 -0.5 721,621 + AO356_03255 0.22 -0.7 721,622 - AO356_03255 0.22 +1.0 721,622 - AO356_03255 0.22 -0.4 721,865 + AO356_03255 0.40 +0.5 721,865 + AO356_03255 0.40 +0.5 721,866 - AO356_03255 0.40 -1.1 721,877 + AO356_03255 0.40 -0.3 721,877 + AO356_03255 0.40 -0.8 721,919 + AO356_03255 0.43 -1.8 721,919 + AO356_03255 0.43 +0.8 721,919 + AO356_03255 0.43 -0.4 721,919 + AO356_03255 0.43 +0.5 721,919 + AO356_03255 0.43 +1.6 721,919 + AO356_03255 0.43 -2.0 721,919 + AO356_03255 0.43 -0.2 721,919 + AO356_03255 0.43 +0.6 721,920 - AO356_03255 0.43 +1.6 721,920 - AO356_03255 0.43 +1.6 721,920 - AO356_03255 0.43 -1.6 721,920 - AO356_03255 0.43 -1.8 721,983 - AO356_03255 0.48 +0.2 722,008 + AO356_03255 0.50 +1.0 722,008 + AO356_03255 0.50 +1.3 722,008 + AO356_03255 0.50 -1.4 722,009 - AO356_03255 0.50 +0.6 722,133 + AO356_03255 0.58 -1.2 722,134 - AO356_03255 0.58 -1.8 722,270 + AO356_03255 0.68 -1.5 722,317 - AO356_03255 0.71 +1.5 722,451 + AO356_03255 0.81 -1.3 722,452 - AO356_03255 0.81 -1.7 722,452 - AO356_03255 0.81 +0.4 722,452 - AO356_03255 0.81 +0.9 722,486 + AO356_03255 0.83 -0.8 722,486 + AO356_03255 0.83 +1.3 722,486 + AO356_03255 0.83 +2.4 722,487 - AO356_03255 0.83 +1.3 722,487 - AO356_03255 0.83 +1.4 722,487 - AO356_03255 0.83 +0.9 722,701 + -0.6 722,701 + -1.4 722,701 + -1.4 722,701 + +1.3 722,702 - +1.2 722,702 - +1.9 722,702 - +1.0 722,707 + -1.3 722,707 + +0.2 722,707 + +0.1 722,707 + -1.5 722,707 + +1.6 722,707 + -0.1 722,707 + +0.8 722,708 - -1.4 722,708 - +1.3 722,708 - +0.6 722,708 - +1.1 722,708 - +3.4 722,708 - +1.2 722,840 + -0.3 722,842 + +0.1 722,842 + -1.3 722,843 - -0.1 722,851 + -0.4 722,851 + +0.7 722,852 - +0.5 722,852 - -1.9 722,852 - -0.0 722,852 - -1.4 722,852 - -0.3 722,891 + +0.1 722,892 - -0.1 722,927 + -0.9 722,953 + -0.9 722,954 - -2.3 723,038 + +1.7 723,038 + -0.3 723,038 + +0.6 723,039 - -0.9 723,342 + AO356_03260 0.47 +0.1 723,467 + AO356_03260 0.63 -1.5 723,487 + AO356_03260 0.65 -1.8 723,487 + AO356_03260 0.65 +0.6 723,487 + AO356_03260 0.65 +2.3 723,488 - AO356_03260 0.65 -0.1 723,488 - AO356_03260 0.65 +1.2 723,493 + AO356_03260 0.66 +2.0 723,494 - AO356_03260 0.66 -1.3 723,494 - AO356_03260 0.66 +1.0 723,494 - AO356_03260 0.66 -0.6 723,494 - AO356_03260 0.66 -0.8 723,555 + AO356_03260 0.74 -0.2 723,594 - AO356_03260 0.79 -2.1 723,607 + AO356_03260 0.80 +0.4 723,650 + AO356_03260 0.86 +0.8 723,651 - AO356_03260 0.86 +0.7
Or see this region's nucleotide sequence