Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01815

Experiment: Nitrate reduction with yeast extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01810 and AO356_01815 are separated by 281 nucleotidesAO356_01815 and AO356_01820 are separated by 200 nucleotidesAO356_01820 and AO356_01825 are separated by 129 nucleotides AO356_01810: AO356_01810 - MFS transporter, at 404,596 to 405,756 _01810 AO356_01815: AO356_01815 - serine/threonine protein kinase, at 406,038 to 407,270 _01815 AO356_01820: AO356_01820 - hypothetical protein, at 407,471 to 407,980 _01820 AO356_01825: AO356_01825 - hypothetical protein, at 408,110 to 408,757 _01825 Position (kb) 406 407 408Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 405.092 kb on + strand, within AO356_01810at 405.092 kb on + strand, within AO356_01810at 405.092 kb on + strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.098 kb on + strand, within AO356_01810at 405.098 kb on + strand, within AO356_01810at 405.098 kb on + strand, within AO356_01810at 405.099 kb on - strand, within AO356_01810at 405.227 kb on + strand, within AO356_01810at 405.228 kb on - strand, within AO356_01810at 405.231 kb on + strand, within AO356_01810at 405.231 kb on + strand, within AO356_01810at 405.231 kb on + strand, within AO356_01810at 405.232 kb on - strand, within AO356_01810at 405.232 kb on - strand, within AO356_01810at 405.610 kb on - strand, within AO356_01810at 405.610 kb on - strand, within AO356_01810at 405.610 kb on - strand, within AO356_01810at 405.718 kb on - strandat 405.834 kb on + strandat 405.834 kb on + strandat 405.835 kb on - strandat 405.835 kb on - strandat 405.853 kb on + strandat 405.853 kb on + strandat 405.854 kb on - strandat 405.877 kb on + strandat 405.926 kb on + strandat 405.952 kb on - strandat 406.019 kb on + strandat 406.020 kb on - strandat 406.020 kb on - strandat 406.296 kb on + strand, within AO356_01815at 406.297 kb on - strand, within AO356_01815at 406.343 kb on + strand, within AO356_01815at 406.343 kb on + strand, within AO356_01815at 406.344 kb on - strand, within AO356_01815at 406.344 kb on - strand, within AO356_01815at 406.344 kb on - strand, within AO356_01815at 406.547 kb on + strand, within AO356_01815at 406.696 kb on + strand, within AO356_01815at 406.696 kb on + strand, within AO356_01815at 406.696 kb on + strand, within AO356_01815at 406.696 kb on + strand, within AO356_01815at 406.697 kb on - strand, within AO356_01815at 406.844 kb on + strand, within AO356_01815at 406.896 kb on + strand, within AO356_01815at 406.896 kb on + strand, within AO356_01815at 406.896 kb on + strand, within AO356_01815at 406.896 kb on + strand, within AO356_01815at 406.896 kb on + strand, within AO356_01815at 406.897 kb on - strand, within AO356_01815at 406.897 kb on - strand, within AO356_01815at 406.897 kb on - strand, within AO356_01815at 406.897 kb on - strand, within AO356_01815at 406.897 kb on - strand, within AO356_01815at 406.897 kb on - strand, within AO356_01815at 406.960 kb on + strand, within AO356_01815at 406.961 kb on - strand, within AO356_01815at 406.978 kb on + strand, within AO356_01815at 406.978 kb on + strand, within AO356_01815at 406.978 kb on + strand, within AO356_01815at 406.979 kb on - strand, within AO356_01815at 407.404 kb on + strandat 407.404 kb on + strandat 407.405 kb on - strandat 407.405 kb on - strandat 407.405 kb on - strandat 407.405 kb on - strandat 407.405 kb on - strandat 407.405 kb on - strandat 407.405 kb on - strandat 407.473 kb on - strandat 407.473 kb on - strandat 407.487 kb on + strandat 407.487 kb on + strandat 407.488 kb on - strandat 407.488 kb on - strandat 407.488 kb on - strandat 407.488 kb on - strandat 407.532 kb on + strand, within AO356_01820at 407.532 kb on + strand, within AO356_01820at 407.532 kb on + strand, within AO356_01820at 407.532 kb on + strand, within AO356_01820at 407.532 kb on + strand, within AO356_01820at 407.532 kb on + strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.571 kb on + strand, within AO356_01820at 407.583 kb on + strand, within AO356_01820at 407.583 kb on + strand, within AO356_01820at 407.584 kb on - strand, within AO356_01820at 407.584 kb on - strand, within AO356_01820at 407.584 kb on - strand, within AO356_01820at 407.694 kb on - strand, within AO356_01820at 407.694 kb on - strand, within AO356_01820at 407.694 kb on - strand, within AO356_01820at 407.745 kb on + strand, within AO356_01820at 407.745 kb on + strand, within AO356_01820at 407.745 kb on + strand, within AO356_01820at 407.745 kb on + strand, within AO356_01820at 407.745 kb on + strand, within AO356_01820at 407.746 kb on - strand, within AO356_01820at 407.746 kb on - strand, within AO356_01820at 407.746 kb on - strand, within AO356_01820at 407.746 kb on - strand, within AO356_01820at 407.746 kb on - strand, within AO356_01820at 407.964 kb on + strandat 407.974 kb on + strandat 407.974 kb on + strandat 407.974 kb on + strandat 407.974 kb on + strandat 407.975 kb on - strandat 407.975 kb on - strandat 408.028 kb on + strandat 408.030 kb on + strandat 408.030 kb on + strandat 408.030 kb on + strandat 408.031 kb on - strandat 408.060 kb on + strandat 408.074 kb on + strandat 408.075 kb on - strandat 408.075 kb on - strandat 408.154 kb on + strandat 408.154 kb on + strandat 408.215 kb on + strand, within AO356_01825at 408.216 kb on - strand, within AO356_01825

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction with yeast extract
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405,092 + AO356_01810 0.43 -1.7
405,092 + AO356_01810 0.43 +1.9
405,092 + AO356_01810 0.43 -0.2
405,093 - AO356_01810 0.43 -2.0
405,093 - AO356_01810 0.43 +1.7
405,093 - AO356_01810 0.43 +2.1
405,093 - AO356_01810 0.43 +1.7
405,093 - AO356_01810 0.43 -1.4
405,093 - AO356_01810 0.43 +1.0
405,098 + AO356_01810 0.43 +2.0
405,098 + AO356_01810 0.43 +0.2
405,098 + AO356_01810 0.43 -0.9
405,099 - AO356_01810 0.43 -1.0
405,227 + AO356_01810 0.54 +0.5
405,228 - AO356_01810 0.54 -0.3
405,231 + AO356_01810 0.55 -1.5
405,231 + AO356_01810 0.55 -2.3
405,231 + AO356_01810 0.55 +0.8
405,232 - AO356_01810 0.55 -0.1
405,232 - AO356_01810 0.55 -0.7
405,610 - AO356_01810 0.87 -1.2
405,610 - AO356_01810 0.87 +2.6
405,610 - AO356_01810 0.87 -1.0
405,718 - +1.1
405,834 + -0.4
405,834 + +0.0
405,835 - +1.1
405,835 - +2.2
405,853 + -1.2
405,853 + +1.2
405,854 - +0.5
405,877 + -1.5
405,926 + -0.7
405,952 - -1.2
406,019 + -1.5
406,020 - +0.8
406,020 - +1.0
406,296 + AO356_01815 0.21 +0.4
406,297 - AO356_01815 0.21 +0.0
406,343 + AO356_01815 0.25 +0.7
406,343 + AO356_01815 0.25 -1.4
406,344 - AO356_01815 0.25 +0.9
406,344 - AO356_01815 0.25 +2.1
406,344 - AO356_01815 0.25 -0.4
406,547 + AO356_01815 0.41 +1.1
406,696 + AO356_01815 0.53 +0.2
406,696 + AO356_01815 0.53 +0.6
406,696 + AO356_01815 0.53 -1.0
406,696 + AO356_01815 0.53 +1.1
406,697 - AO356_01815 0.53 +0.2
406,844 + AO356_01815 0.65 +1.2
406,896 + AO356_01815 0.70 -0.1
406,896 + AO356_01815 0.70 -1.8
406,896 + AO356_01815 0.70 +1.3
406,896 + AO356_01815 0.70 -0.7
406,896 + AO356_01815 0.70 -0.7
406,897 - AO356_01815 0.70 -0.4
406,897 - AO356_01815 0.70 -1.9
406,897 - AO356_01815 0.70 +0.8
406,897 - AO356_01815 0.70 +0.5
406,897 - AO356_01815 0.70 +1.2
406,897 - AO356_01815 0.70 -0.4
406,960 + AO356_01815 0.75 -2.4
406,961 - AO356_01815 0.75 -0.4
406,978 + AO356_01815 0.76 +0.3
406,978 + AO356_01815 0.76 +2.3
406,978 + AO356_01815 0.76 +0.8
406,979 - AO356_01815 0.76 -1.3
407,404 + +0.9
407,404 + +2.1
407,405 - +1.8
407,405 - -1.9
407,405 - +1.1
407,405 - +1.2
407,405 - +0.5
407,405 - +0.0
407,405 - +0.6
407,473 - -2.4
407,473 - +0.9
407,487 + +1.4
407,487 + -1.7
407,488 - -1.8
407,488 - +0.3
407,488 - -0.1
407,488 - -0.5
407,532 + AO356_01820 0.12 +0.0
407,532 + AO356_01820 0.12 +1.6
407,532 + AO356_01820 0.12 +1.0
407,532 + AO356_01820 0.12 -1.9
407,532 + AO356_01820 0.12 +0.8
407,532 + AO356_01820 0.12 +0.9
407,533 - AO356_01820 0.12 +1.4
407,533 - AO356_01820 0.12 -2.0
407,533 - AO356_01820 0.12 +0.7
407,533 - AO356_01820 0.12 +1.3
407,533 - AO356_01820 0.12 -1.4
407,533 - AO356_01820 0.12 +0.6
407,533 - AO356_01820 0.12 +3.1
407,533 - AO356_01820 0.12 -1.7
407,533 - AO356_01820 0.12 -1.7
407,533 - AO356_01820 0.12 -1.8
407,533 - AO356_01820 0.12 +0.5
407,533 - AO356_01820 0.12 -1.2
407,533 - AO356_01820 0.12 +0.5
407,571 + AO356_01820 0.20 -0.7
407,583 + AO356_01820 0.22 +3.2
407,583 + AO356_01820 0.22 -1.7
407,584 - AO356_01820 0.22 +1.5
407,584 - AO356_01820 0.22 +1.9
407,584 - AO356_01820 0.22 +2.2
407,694 - AO356_01820 0.44 -0.9
407,694 - AO356_01820 0.44 -0.7
407,694 - AO356_01820 0.44 -1.2
407,745 + AO356_01820 0.54 -0.4
407,745 + AO356_01820 0.54 -0.2
407,745 + AO356_01820 0.54 +1.6
407,745 + AO356_01820 0.54 +0.9
407,745 + AO356_01820 0.54 +1.6
407,746 - AO356_01820 0.54 -1.0
407,746 - AO356_01820 0.54 -0.3
407,746 - AO356_01820 0.54 -1.0
407,746 - AO356_01820 0.54 +0.6
407,746 - AO356_01820 0.54 +0.1
407,964 + -1.6
407,974 + -2.4
407,974 + +0.0
407,974 + +2.3
407,974 + +1.6
407,975 - -1.5
407,975 - -1.1
408,028 + +2.6
408,030 + +1.7
408,030 + -3.1
408,030 + -1.5
408,031 - +0.7
408,060 + +0.7
408,074 + -1.0
408,075 - -0.0
408,075 - +0.8
408,154 + -1.5
408,154 + -0.9
408,215 + AO356_01825 0.16 +1.2
408,216 - AO356_01825 0.16 +1.2

Or see this region's nucleotide sequence