Experiment: Nitrate reduction with yeast extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01225 and AO356_01230 are separated by 169 nucleotides AO356_01230 and AO356_01235 are separated by 336 nucleotides
AO356_01225: AO356_01225 - alpha/beta hydrolase, at 280,786 to 281,724
_01225
AO356_01230: AO356_01230 - GntR family transcriptional regulator, at 281,894 to 282,607
_01230
AO356_01235: AO356_01235 - MFS transporter, at 282,944 to 284,293
_01235
Position (kb) 281
282
283 Strain fitness (log2 ratio) -2
-1
0
1
2 at 281.059 kb on + strand, within AO356_01225 at 281.060 kb on - strand, within AO356_01225 at 281.060 kb on - strand, within AO356_01225 at 281.201 kb on - strand, within AO356_01225 at 281.201 kb on - strand, within AO356_01225 at 281.269 kb on + strand, within AO356_01225 at 281.269 kb on + strand, within AO356_01225 at 281.269 kb on + strand, within AO356_01225 at 281.269 kb on + strand, within AO356_01225 at 281.270 kb on - strand, within AO356_01225 at 281.418 kb on + strand, within AO356_01225 at 281.418 kb on + strand, within AO356_01225 at 281.419 kb on - strand, within AO356_01225 at 281.419 kb on - strand, within AO356_01225 at 281.419 kb on - strand, within AO356_01225 at 281.419 kb on - strand, within AO356_01225 at 281.524 kb on + strand, within AO356_01225 at 281.607 kb on + strand, within AO356_01225 at 281.607 kb on + strand, within AO356_01225 at 281.608 kb on - strand, within AO356_01225 at 281.608 kb on - strand, within AO356_01225 at 281.608 kb on - strand, within AO356_01225 at 281.608 kb on - strand, within AO356_01225 at 281.608 kb on - strand, within AO356_01225 at 281.736 kb on - strand at 281.736 kb on - strand at 281.736 kb on - strand at 282.032 kb on + strand, within AO356_01230 at 282.032 kb on + strand, within AO356_01230 at 282.032 kb on + strand, within AO356_01230 at 282.205 kb on - strand, within AO356_01230 at 282.571 kb on + strand at 282.572 kb on - strand at 283.058 kb on + strand at 283.058 kb on + strand at 283.059 kb on - strand at 283.059 kb on - strand at 283.059 kb on - strand at 283.059 kb on - strand at 283.131 kb on - strand, within AO356_01235 at 283.295 kb on + strand, within AO356_01235 at 283.295 kb on + strand, within AO356_01235 at 283.295 kb on + strand, within AO356_01235 at 283.296 kb on - strand, within AO356_01235 at 283.296 kb on - strand, within AO356_01235 at 283.352 kb on + strand, within AO356_01235 at 283.352 kb on + strand, within AO356_01235 at 283.353 kb on - strand, within AO356_01235 at 283.353 kb on - strand, within AO356_01235 at 283.355 kb on + strand, within AO356_01235 at 283.355 kb on + strand, within AO356_01235 at 283.505 kb on + strand, within AO356_01235 at 283.506 kb on - strand, within AO356_01235
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction with yeast extract remove 281,059 + AO356_01225 0.29 +0.1 281,060 - AO356_01225 0.29 -1.4 281,060 - AO356_01225 0.29 +0.8 281,201 - AO356_01225 0.44 -1.1 281,201 - AO356_01225 0.44 +2.3 281,269 + AO356_01225 0.51 +0.6 281,269 + AO356_01225 0.51 -0.3 281,269 + AO356_01225 0.51 +1.0 281,269 + AO356_01225 0.51 +2.2 281,270 - AO356_01225 0.52 -1.2 281,418 + AO356_01225 0.67 -2.3 281,418 + AO356_01225 0.67 +0.9 281,419 - AO356_01225 0.67 -1.3 281,419 - AO356_01225 0.67 +1.2 281,419 - AO356_01225 0.67 +2.5 281,419 - AO356_01225 0.67 +0.4 281,524 + AO356_01225 0.79 +0.6 281,607 + AO356_01225 0.87 -0.0 281,607 + AO356_01225 0.87 +0.1 281,608 - AO356_01225 0.88 +1.4 281,608 - AO356_01225 0.88 -0.5 281,608 - AO356_01225 0.88 +1.8 281,608 - AO356_01225 0.88 +0.1 281,608 - AO356_01225 0.88 +1.1 281,736 - -0.8 281,736 - -1.0 281,736 - +1.9 282,032 + AO356_01230 0.19 +0.8 282,032 + AO356_01230 0.19 -0.0 282,032 + AO356_01230 0.19 +1.1 282,205 - AO356_01230 0.44 -1.9 282,571 + +1.0 282,572 - +0.5 283,058 + -0.2 283,058 + +1.4 283,059 - +0.8 283,059 - -1.3 283,059 - +0.3 283,059 - -0.3 283,131 - AO356_01235 0.14 +0.4 283,295 + AO356_01235 0.26 +1.5 283,295 + AO356_01235 0.26 +1.1 283,295 + AO356_01235 0.26 +0.4 283,296 - AO356_01235 0.26 +0.1 283,296 - AO356_01235 0.26 +2.4 283,352 + AO356_01235 0.30 +2.5 283,352 + AO356_01235 0.30 +2.4 283,353 - AO356_01235 0.30 +0.8 283,353 - AO356_01235 0.30 -1.5 283,355 + AO356_01235 0.30 +1.8 283,355 + AO356_01235 0.30 -0.2 283,505 + AO356_01235 0.42 +0.8 283,506 - AO356_01235 0.42 +2.1
Or see this region's nucleotide sequence