Experiment: Nitrate reduction with yeast extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00290 and AO356_00295 are separated by 132 nucleotides AO356_00295 and AO356_00300 are separated by 229 nucleotides
AO356_00290: AO356_00290 - DNA primase, at 52,921 to 53,883
_00290
AO356_00295: AO356_00295 - hypothetical protein, at 54,016 to 54,210
_00295
AO356_00300: AO356_00300 - relaxase, at 54,440 to 56,164
_00300
Position (kb) 54
55 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 53.213 kb on - strand, within AO356_00290 at 53.213 kb on - strand, within AO356_00290 at 53.426 kb on + strand, within AO356_00290 at 53.426 kb on + strand, within AO356_00290 at 53.426 kb on + strand, within AO356_00290 at 53.427 kb on - strand, within AO356_00290 at 53.442 kb on + strand, within AO356_00290 at 53.442 kb on + strand, within AO356_00290 at 53.537 kb on - strand, within AO356_00290 at 53.539 kb on + strand, within AO356_00290 at 53.539 kb on + strand, within AO356_00290 at 53.540 kb on - strand, within AO356_00290 at 53.638 kb on + strand, within AO356_00290 at 53.682 kb on - strand, within AO356_00290 at 53.689 kb on + strand, within AO356_00290 at 53.690 kb on - strand, within AO356_00290 at 53.809 kb on + strand at 54.042 kb on - strand, within AO356_00295 at 54.042 kb on - strand, within AO356_00295 at 54.083 kb on + strand, within AO356_00295 at 54.083 kb on + strand, within AO356_00295 at 54.165 kb on + strand, within AO356_00295 at 54.165 kb on + strand, within AO356_00295 at 54.166 kb on - strand, within AO356_00295 at 54.166 kb on - strand, within AO356_00295 at 54.184 kb on + strand, within AO356_00295 at 54.213 kb on + strand at 54.214 kb on - strand at 54.214 kb on - strand at 54.214 kb on - strand at 54.263 kb on + strand at 54.300 kb on + strand at 54.300 kb on + strand at 54.301 kb on - strand at 54.306 kb on + strand at 54.380 kb on + strand at 54.402 kb on + strand at 54.509 kb on + strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.585 kb on - strand at 54.585 kb on - strand at 54.620 kb on + strand, within AO356_00300 at 54.620 kb on + strand, within AO356_00300 at 54.620 kb on + strand, within AO356_00300 at 54.625 kb on - strand, within AO356_00300 at 54.625 kb on - strand, within AO356_00300 at 54.625 kb on - strand, within AO356_00300 at 54.642 kb on - strand, within AO356_00300 at 54.692 kb on + strand, within AO356_00300 at 54.693 kb on - strand, within AO356_00300 at 54.758 kb on + strand, within AO356_00300 at 54.759 kb on - strand, within AO356_00300 at 54.947 kb on + strand, within AO356_00300 at 54.947 kb on + strand, within AO356_00300 at 54.966 kb on - strand, within AO356_00300 at 54.999 kb on - strand, within AO356_00300 at 54.999 kb on - strand, within AO356_00300 at 54.999 kb on - strand, within AO356_00300 at 55.070 kb on + strand, within AO356_00300 at 55.070 kb on + strand, within AO356_00300 at 55.071 kb on - strand, within AO356_00300 at 55.071 kb on - strand, within AO356_00300 at 55.071 kb on - strand, within AO356_00300 at 55.071 kb on - strand, within AO356_00300 at 55.089 kb on - strand, within AO356_00300 at 55.200 kb on + strand, within AO356_00300 at 55.201 kb on - strand, within AO356_00300
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction with yeast extract remove 53,213 - AO356_00290 0.30 -2.5 53,213 - AO356_00290 0.30 +0.7 53,426 + AO356_00290 0.52 +2.3 53,426 + AO356_00290 0.52 -1.2 53,426 + AO356_00290 0.52 -0.1 53,427 - AO356_00290 0.53 +1.9 53,442 + AO356_00290 0.54 +2.3 53,442 + AO356_00290 0.54 +1.1 53,537 - AO356_00290 0.64 -0.8 53,539 + AO356_00290 0.64 -0.6 53,539 + AO356_00290 0.64 -0.2 53,540 - AO356_00290 0.64 -0.2 53,638 + AO356_00290 0.74 +0.3 53,682 - AO356_00290 0.79 -2.2 53,689 + AO356_00290 0.80 +0.2 53,690 - AO356_00290 0.80 -2.6 53,809 + -0.5 54,042 - AO356_00295 0.13 +0.8 54,042 - AO356_00295 0.13 -0.8 54,083 + AO356_00295 0.34 -1.9 54,083 + AO356_00295 0.34 +1.6 54,165 + AO356_00295 0.76 +1.4 54,165 + AO356_00295 0.76 -1.3 54,166 - AO356_00295 0.77 -2.2 54,166 - AO356_00295 0.77 -1.3 54,184 + AO356_00295 0.86 -1.9 54,213 + -0.2 54,214 - -0.1 54,214 - +0.9 54,214 - +2.0 54,263 + -1.1 54,300 + -2.4 54,300 + -2.7 54,301 - +0.6 54,306 + +0.9 54,380 + -2.0 54,402 + -1.5 54,509 + -2.5 54,510 - +1.0 54,510 - -1.3 54,510 - +0.9 54,585 - -2.0 54,585 - -0.8 54,620 + AO356_00300 0.10 +0.4 54,620 + AO356_00300 0.10 -0.7 54,620 + AO356_00300 0.10 -0.7 54,625 - AO356_00300 0.11 -1.5 54,625 - AO356_00300 0.11 -0.1 54,625 - AO356_00300 0.11 -1.9 54,642 - AO356_00300 0.12 +0.5 54,692 + AO356_00300 0.15 +0.3 54,693 - AO356_00300 0.15 -0.2 54,758 + AO356_00300 0.18 +1.6 54,759 - AO356_00300 0.18 -0.4 54,947 + AO356_00300 0.29 -0.1 54,947 + AO356_00300 0.29 +2.5 54,966 - AO356_00300 0.30 +0.3 54,999 - AO356_00300 0.32 +1.8 54,999 - AO356_00300 0.32 -0.9 54,999 - AO356_00300 0.32 +1.8 55,070 + AO356_00300 0.37 +3.6 55,070 + AO356_00300 0.37 +1.6 55,071 - AO356_00300 0.37 +1.2 55,071 - AO356_00300 0.37 +1.9 55,071 - AO356_00300 0.37 +0.8 55,071 - AO356_00300 0.37 +0.3 55,089 - AO356_00300 0.38 -1.8 55,200 + AO356_00300 0.44 -2.2 55,201 - AO356_00300 0.44 -1.4
Or see this region's nucleotide sequence