Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24590

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24585 and AO353_24590 are separated by 223 nucleotidesAO353_24590 and AO353_24595 are separated by 320 nucleotidesAO353_24595 and AO353_24600 are separated by 206 nucleotides AO353_24585: AO353_24585 - hypothetical protein, at 5,406,712 to 5,408,790 _24585 AO353_24590: AO353_24590 - hypothetical protein, at 5,409,014 to 5,410,156 _24590 AO353_24595: AO353_24595 - hypothetical protein, at 5,410,477 to 5,410,725 _24595 AO353_24600: AO353_24600 - hypothetical protein, at 5,410,932 to 5,411,279 _24600 Position (kb) 5409 5410 5411Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5408.124 kb on + strand, within AO353_24585at 5408.124 kb on + strand, within AO353_24585at 5408.125 kb on - strand, within AO353_24585at 5408.125 kb on - strand, within AO353_24585at 5408.126 kb on + strand, within AO353_24585at 5408.126 kb on + strand, within AO353_24585at 5408.126 kb on + strand, within AO353_24585at 5408.127 kb on - strand, within AO353_24585at 5408.127 kb on - strand, within AO353_24585at 5408.167 kb on + strand, within AO353_24585at 5408.167 kb on + strand, within AO353_24585at 5408.167 kb on + strand, within AO353_24585at 5408.167 kb on + strand, within AO353_24585at 5408.168 kb on - strand, within AO353_24585at 5408.168 kb on - strand, within AO353_24585at 5408.168 kb on - strand, within AO353_24585at 5408.168 kb on - strand, within AO353_24585at 5408.205 kb on + strand, within AO353_24585at 5408.205 kb on + strand, within AO353_24585at 5408.206 kb on - strand, within AO353_24585at 5408.260 kb on + strand, within AO353_24585at 5408.260 kb on + strand, within AO353_24585at 5408.260 kb on + strand, within AO353_24585at 5408.261 kb on - strand, within AO353_24585at 5408.277 kb on - strand, within AO353_24585at 5408.277 kb on - strand, within AO353_24585at 5408.320 kb on - strand, within AO353_24585at 5408.320 kb on - strand, within AO353_24585at 5408.320 kb on - strand, within AO353_24585at 5408.359 kb on - strand, within AO353_24585at 5408.377 kb on + strand, within AO353_24585at 5408.377 kb on + strand, within AO353_24585at 5408.377 kb on + strand, within AO353_24585at 5408.378 kb on - strand, within AO353_24585at 5408.474 kb on + strand, within AO353_24585at 5408.475 kb on - strand, within AO353_24585at 5408.475 kb on - strand, within AO353_24585at 5408.497 kb on + strand, within AO353_24585at 5408.497 kb on + strand, within AO353_24585at 5408.497 kb on + strand, within AO353_24585at 5408.497 kb on + strand, within AO353_24585at 5408.497 kb on + strand, within AO353_24585at 5408.497 kb on + strand, within AO353_24585at 5408.497 kb on + strand, within AO353_24585at 5408.498 kb on - strand, within AO353_24585at 5408.498 kb on - strandat 5408.498 kb on - strand, within AO353_24585at 5408.498 kb on - strand, within AO353_24585at 5408.498 kb on - strand, within AO353_24585at 5408.576 kb on + strand, within AO353_24585at 5408.576 kb on + strand, within AO353_24585at 5408.577 kb on - strand, within AO353_24585at 5408.577 kb on - strand, within AO353_24585at 5408.577 kb on - strand, within AO353_24585at 5408.577 kb on - strand, within AO353_24585at 5408.595 kb on + strandat 5408.601 kb on + strandat 5408.601 kb on + strandat 5408.601 kb on + strandat 5408.602 kb on - strandat 5408.602 kb on - strandat 5408.602 kb on - strandat 5408.602 kb on - strandat 5408.626 kb on + strandat 5408.627 kb on - strandat 5408.713 kb on + strandat 5408.713 kb on + strandat 5408.714 kb on - strandat 5408.714 kb on - strandat 5408.714 kb on - strandat 5408.714 kb on - strandat 5408.801 kb on - strandat 5408.801 kb on - strandat 5408.801 kb on - strandat 5408.870 kb on + strandat 5408.870 kb on + strandat 5408.870 kb on + strandat 5408.871 kb on - strandat 5408.877 kb on - strandat 5408.884 kb on - strandat 5408.936 kb on - strandat 5408.936 kb on - strandat 5408.972 kb on + strandat 5408.972 kb on + strandat 5408.972 kb on + strandat 5408.972 kb on + strandat 5408.972 kb on + strandat 5408.972 kb on + strandat 5408.972 kb on + strandat 5408.972 kb on + strandat 5408.973 kb on - strandat 5408.973 kb on - strandat 5409.033 kb on + strandat 5409.033 kb on + strandat 5409.033 kb on + strandat 5409.034 kb on - strandat 5409.034 kb on - strandat 5409.153 kb on + strand, within AO353_24590at 5409.153 kb on + strand, within AO353_24590at 5409.154 kb on - strand, within AO353_24590at 5409.154 kb on - strand, within AO353_24590at 5409.162 kb on - strand, within AO353_24590at 5409.162 kb on - strand, within AO353_24590at 5409.182 kb on - strand, within AO353_24590at 5409.293 kb on + strand, within AO353_24590at 5409.293 kb on + strand, within AO353_24590at 5409.293 kb on + strand, within AO353_24590at 5409.294 kb on - strand, within AO353_24590at 5409.347 kb on + strand, within AO353_24590at 5409.347 kb on + strand, within AO353_24590at 5409.347 kb on + strand, within AO353_24590at 5409.348 kb on - strand, within AO353_24590at 5409.348 kb on - strand, within AO353_24590at 5409.348 kb on - strand, within AO353_24590at 5409.348 kb on - strand, within AO353_24590at 5409.358 kb on + strand, within AO353_24590at 5409.358 kb on + strand, within AO353_24590at 5409.358 kb on + strand, within AO353_24590at 5409.358 kb on + strand, within AO353_24590at 5409.359 kb on - strand, within AO353_24590at 5409.359 kb on - strand, within AO353_24590at 5409.448 kb on + strand, within AO353_24590at 5409.448 kb on + strand, within AO353_24590at 5409.448 kb on + strand, within AO353_24590at 5409.448 kb on + strand, within AO353_24590at 5409.448 kb on + strand, within AO353_24590at 5409.448 kb on + strand, within AO353_24590at 5409.448 kb on + strand, within AO353_24590at 5409.449 kb on - strand, within AO353_24590at 5409.449 kb on - strand, within AO353_24590at 5409.449 kb on - strand, within AO353_24590at 5409.449 kb on - strand, within AO353_24590at 5409.449 kb on - strand, within AO353_24590at 5409.520 kb on - strand, within AO353_24590at 5409.547 kb on + strand, within AO353_24590at 5409.547 kb on + strand, within AO353_24590at 5409.547 kb on + strand, within AO353_24590at 5409.547 kb on + strandat 5409.577 kb on + strand, within AO353_24590at 5409.577 kb on + strand, within AO353_24590at 5409.577 kb on + strand, within AO353_24590at 5409.577 kb on + strand, within AO353_24590at 5409.594 kb on + strand, within AO353_24590at 5409.594 kb on + strand, within AO353_24590at 5409.594 kb on + strand, within AO353_24590at 5409.883 kb on + strandat 5409.883 kb on + strand, within AO353_24590at 5409.883 kb on + strand, within AO353_24590at 5409.884 kb on - strand, within AO353_24590at 5409.903 kb on + strand, within AO353_24590at 5409.903 kb on + strand, within AO353_24590at 5409.903 kb on + strand, within AO353_24590at 5409.904 kb on - strand, within AO353_24590at 5409.904 kb on - strand, within AO353_24590at 5409.904 kb on - strand, within AO353_24590at 5409.986 kb on + strand, within AO353_24590at 5409.986 kb on + strand, within AO353_24590at 5409.986 kb on + strand, within AO353_24590at 5409.987 kb on - strand, within AO353_24590at 5410.148 kb on + strandat 5410.161 kb on + strandat 5410.162 kb on - strandat 5410.162 kb on - strandat 5410.242 kb on + strandat 5410.242 kb on + strandat 5410.242 kb on + strandat 5410.242 kb on + strandat 5410.243 kb on - strandat 5410.243 kb on - strandat 5410.243 kb on - strandat 5410.282 kb on - strandat 5410.390 kb on + strandat 5410.390 kb on + strandat 5410.420 kb on + strandat 5410.421 kb on - strandat 5410.442 kb on - strandat 5410.442 kb on - strandat 5410.445 kb on + strandat 5410.552 kb on - strand, within AO353_24595at 5410.565 kb on + strand, within AO353_24595at 5410.566 kb on - strand, within AO353_24595at 5410.667 kb on - strand, within AO353_24595at 5410.707 kb on + strandat 5410.711 kb on - strandat 5410.711 kb on - strandat 5410.789 kb on + strandat 5410.806 kb on + strandat 5410.811 kb on - strandat 5410.819 kb on + strandat 5411.027 kb on + strand, within AO353_24600at 5411.103 kb on - strand, within AO353_24600at 5411.117 kb on + strand, within AO353_24600

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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5,408,124 + AO353_24585 0.68 -1.0
5,408,124 + AO353_24585 0.68 +1.6
5,408,125 - AO353_24585 0.68 -0.0
5,408,125 - AO353_24585 0.68 +1.8
5,408,126 + AO353_24585 0.68 +1.9
5,408,126 + AO353_24585 0.68 +0.9
5,408,126 + AO353_24585 0.68 +0.6
5,408,127 - AO353_24585 0.68 +0.5
5,408,127 - AO353_24585 0.68 -1.0
5,408,167 + AO353_24585 0.70 -0.3
5,408,167 + AO353_24585 0.70 +1.3
5,408,167 + AO353_24585 0.70 -1.3
5,408,167 + AO353_24585 0.70 +2.3
5,408,168 - AO353_24585 0.70 -0.1
5,408,168 - AO353_24585 0.70 -0.0
5,408,168 - AO353_24585 0.70 -0.8
5,408,168 - AO353_24585 0.70 -1.1
5,408,205 + AO353_24585 0.72 +0.3
5,408,205 + AO353_24585 0.72 -0.0
5,408,206 - AO353_24585 0.72 -0.7
5,408,260 + AO353_24585 0.74 -1.0
5,408,260 + AO353_24585 0.74 -0.0
5,408,260 + AO353_24585 0.74 +2.2
5,408,261 - AO353_24585 0.75 +0.3
5,408,277 - AO353_24585 0.75 +0.3
5,408,277 - AO353_24585 0.75 +2.0
5,408,320 - AO353_24585 0.77 +0.9
5,408,320 - AO353_24585 0.77 -0.3
5,408,320 - AO353_24585 0.77 -0.3
5,408,359 - AO353_24585 0.79 +0.6
5,408,377 + AO353_24585 0.80 -0.6
5,408,377 + AO353_24585 0.80 +0.1
5,408,377 + AO353_24585 0.80 +1.0
5,408,378 - AO353_24585 0.80 +0.3
5,408,474 + AO353_24585 0.85 -0.3
5,408,475 - AO353_24585 0.85 +0.3
5,408,475 - AO353_24585 0.85 +1.0
5,408,497 + AO353_24585 0.86 -0.3
5,408,497 + AO353_24585 0.86 +1.1
5,408,497 + AO353_24585 0.86 +0.3
5,408,497 + AO353_24585 0.86 +0.3
5,408,497 + AO353_24585 0.86 -0.3
5,408,497 + AO353_24585 0.86 -0.3
5,408,497 + AO353_24585 0.86 -0.4
5,408,498 - AO353_24585 0.86 +0.3
5,408,498 - +0.7
5,408,498 - AO353_24585 0.86 -0.7
5,408,498 - AO353_24585 0.86 -0.8
5,408,498 - AO353_24585 0.86 +0.4
5,408,576 + AO353_24585 0.90 +0.2
5,408,576 + AO353_24585 0.90 -2.1
5,408,577 - AO353_24585 0.90 +0.3
5,408,577 - AO353_24585 0.90 -0.7
5,408,577 - AO353_24585 0.90 +1.1
5,408,577 - AO353_24585 0.90 +1.2
5,408,595 + +1.5
5,408,601 + +0.5
5,408,601 + +2.1
5,408,601 + +0.9
5,408,602 - -0.6
5,408,602 - +0.6
5,408,602 - +0.1
5,408,602 - +0.1
5,408,626 + +0.9
5,408,627 - -0.4
5,408,713 + -0.4
5,408,713 + -1.1
5,408,714 - +1.0
5,408,714 - -0.3
5,408,714 - -1.3
5,408,714 - -1.6
5,408,801 - +0.3
5,408,801 - -0.4
5,408,801 - +0.4
5,408,870 + -0.0
5,408,870 + -0.0
5,408,870 + -1.1
5,408,871 - +1.3
5,408,877 - -0.3
5,408,884 - +0.1
5,408,936 - -2.8
5,408,936 - -0.1
5,408,972 + +0.1
5,408,972 + -1.1
5,408,972 + -0.8
5,408,972 + +0.1
5,408,972 + -0.1
5,408,972 + -0.6
5,408,972 + -0.5
5,408,972 + +0.3
5,408,973 - +0.3
5,408,973 - -0.3
5,409,033 + +1.0
5,409,033 + +0.5
5,409,033 + -1.1
5,409,034 - +1.1
5,409,034 - +0.8
5,409,153 + AO353_24590 0.12 -0.6
5,409,153 + AO353_24590 0.12 -2.4
5,409,154 - AO353_24590 0.12 +1.3
5,409,154 - AO353_24590 0.12 -0.4
5,409,162 - AO353_24590 0.13 +0.7
5,409,162 - AO353_24590 0.13 -0.7
5,409,182 - AO353_24590 0.15 -1.2
5,409,293 + AO353_24590 0.24 -0.5
5,409,293 + AO353_24590 0.24 -1.5
5,409,293 + AO353_24590 0.24 -0.7
5,409,294 - AO353_24590 0.24 -0.1
5,409,347 + AO353_24590 0.29 -0.5
5,409,347 + AO353_24590 0.29 -0.2
5,409,347 + AO353_24590 0.29 +0.7
5,409,348 - AO353_24590 0.29 +0.2
5,409,348 - AO353_24590 0.29 +0.3
5,409,348 - AO353_24590 0.29 -0.8
5,409,348 - AO353_24590 0.29 -2.1
5,409,358 + AO353_24590 0.30 -0.5
5,409,358 + AO353_24590 0.30 -2.1
5,409,358 + AO353_24590 0.30 +0.9
5,409,358 + AO353_24590 0.30 +0.3
5,409,359 - AO353_24590 0.30 -0.5
5,409,359 - AO353_24590 0.30 -1.5
5,409,448 + AO353_24590 0.38 -0.7
5,409,448 + AO353_24590 0.38 -2.0
5,409,448 + AO353_24590 0.38 -2.6
5,409,448 + AO353_24590 0.38 -0.1
5,409,448 + AO353_24590 0.38 -1.6
5,409,448 + AO353_24590 0.38 +0.6
5,409,448 + AO353_24590 0.38 +0.7
5,409,449 - AO353_24590 0.38 -1.5
5,409,449 - AO353_24590 0.38 -0.3
5,409,449 - AO353_24590 0.38 +0.4
5,409,449 - AO353_24590 0.38 -0.3
5,409,449 - AO353_24590 0.38 +0.2
5,409,520 - AO353_24590 0.44 -1.2
5,409,547 + AO353_24590 0.47 -0.9
5,409,547 + AO353_24590 0.47 -2.4
5,409,547 + AO353_24590 0.47 -0.6
5,409,547 + +0.7
5,409,577 + AO353_24590 0.49 -0.2
5,409,577 + AO353_24590 0.49 -0.0
5,409,577 + AO353_24590 0.49 +0.2
5,409,577 + AO353_24590 0.49 -0.3
5,409,594 + AO353_24590 0.51 +0.6
5,409,594 + AO353_24590 0.51 +1.0
5,409,594 + AO353_24590 0.51 -0.6
5,409,883 + -0.3
5,409,883 + AO353_24590 0.76 +0.1
5,409,883 + AO353_24590 0.76 -0.1
5,409,884 - AO353_24590 0.76 +0.4
5,409,903 + AO353_24590 0.78 +0.7
5,409,903 + AO353_24590 0.78 -1.1
5,409,903 + AO353_24590 0.78 -1.6
5,409,904 - AO353_24590 0.78 -1.8
5,409,904 - AO353_24590 0.78 -0.0
5,409,904 - AO353_24590 0.78 +0.3
5,409,986 + AO353_24590 0.85 -0.0
5,409,986 + AO353_24590 0.85 +0.5
5,409,986 + AO353_24590 0.85 -0.6
5,409,987 - AO353_24590 0.85 +0.1
5,410,148 + +0.7
5,410,161 + -0.3
5,410,162 - -2.7
5,410,162 - -0.1
5,410,242 + +0.1
5,410,242 + +0.3
5,410,242 + -0.7
5,410,242 + +1.1
5,410,243 - +0.9
5,410,243 - +1.9
5,410,243 - +1.3
5,410,282 - -0.6
5,410,390 + -1.7
5,410,390 + +0.1
5,410,420 + +0.1
5,410,421 - +0.3
5,410,442 - +0.3
5,410,442 - +0.1
5,410,445 + +1.7
5,410,552 - AO353_24595 0.30 -0.7
5,410,565 + AO353_24595 0.35 -0.1
5,410,566 - AO353_24595 0.36 -0.4
5,410,667 - AO353_24595 0.76 -0.6
5,410,707 + -1.7
5,410,711 - -0.0
5,410,711 - -0.1
5,410,789 + +0.3
5,410,806 + -1.6
5,410,811 - -2.4
5,410,819 + -0.3
5,411,027 + AO353_24600 0.27 +0.3
5,411,103 - AO353_24600 0.49 -1.5
5,411,117 + AO353_24600 0.53 +0.5

Or see this region's nucleotide sequence