Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21865

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21855 and AO353_21860 overlap by 4 nucleotidesAO353_21860 and AO353_21865 overlap by 4 nucleotidesAO353_21865 and AO353_21870 overlap by 4 nucleotidesAO353_21870 and AO353_21875 are separated by 3 nucleotides AO353_21855: AO353_21855 - ABC transporter ATP-binding protein, at 4,793,584 to 4,794,555 _21855 AO353_21860: AO353_21860 - methionine ABC transporter ATP-binding protein, at 4,794,552 to 4,795,538 _21860 AO353_21865: AO353_21865 - nickel ABC transporter permease, at 4,795,535 to 4,796,392 _21865 AO353_21870: AO353_21870 - ABC transporter permease, at 4,796,389 to 4,797,336 _21870 AO353_21875: AO353_21875 - proline iminopeptidase, at 4,797,340 to 4,798,227 _21875 Position (kb) 4795 4796 4797Strain fitness (log2 ratio) -2 -1 0 1 2at 4794.555 kb on + strandat 4794.555 kb on + strandat 4794.555 kb on + strandat 4794.556 kb on - strandat 4794.556 kb on - strandat 4794.556 kb on - strandat 4794.619 kb on - strandat 4794.783 kb on - strand, within AO353_21860at 4794.785 kb on - strand, within AO353_21860at 4794.785 kb on - strand, within AO353_21860at 4794.807 kb on + strand, within AO353_21860at 4794.807 kb on + strand, within AO353_21860at 4794.807 kb on + strand, within AO353_21860at 4794.808 kb on - strand, within AO353_21860at 4794.808 kb on - strand, within AO353_21860at 4794.808 kb on - strand, within AO353_21860at 4794.847 kb on + strand, within AO353_21860at 4794.847 kb on + strand, within AO353_21860at 4794.847 kb on + strand, within AO353_21860at 4794.847 kb on + strand, within AO353_21860at 4794.847 kb on + strand, within AO353_21860at 4794.847 kb on + strand, within AO353_21860at 4794.847 kb on + strand, within AO353_21860at 4794.848 kb on - strand, within AO353_21860at 4794.848 kb on - strand, within AO353_21860at 4794.848 kb on - strand, within AO353_21860at 4794.848 kb on - strand, within AO353_21860at 4794.848 kb on - strand, within AO353_21860at 4794.848 kb on - strand, within AO353_21860at 4794.848 kb on - strand, within AO353_21860at 4794.848 kb on - strand, within AO353_21860at 4794.848 kb on - strand, within AO353_21860at 4794.848 kb on - strand, within AO353_21860at 4794.848 kb on - strand, within AO353_21860at 4795.081 kb on + strand, within AO353_21860at 4795.081 kb on + strand, within AO353_21860at 4795.081 kb on + strand, within AO353_21860at 4795.081 kb on + strand, within AO353_21860at 4795.082 kb on - strand, within AO353_21860at 4795.082 kb on - strand, within AO353_21860at 4795.082 kb on - strand, within AO353_21860at 4795.272 kb on + strand, within AO353_21860at 4795.272 kb on + strand, within AO353_21860at 4795.273 kb on - strand, within AO353_21860at 4795.273 kb on - strand, within AO353_21860at 4795.273 kb on - strand, within AO353_21860at 4795.273 kb on - strand, within AO353_21860at 4795.273 kb on - strand, within AO353_21860at 4795.273 kb on - strand, within AO353_21860at 4795.273 kb on - strand, within AO353_21860at 4795.302 kb on + strand, within AO353_21860at 4795.302 kb on + strand, within AO353_21860at 4795.392 kb on - strand, within AO353_21860at 4795.392 kb on - strand, within AO353_21860at 4795.392 kb on - strand, within AO353_21860at 4795.419 kb on + strand, within AO353_21860at 4795.465 kb on - strandat 4795.465 kb on - strandat 4795.532 kb on + strandat 4795.533 kb on - strandat 4795.648 kb on + strand, within AO353_21865at 4795.649 kb on - strand, within AO353_21865at 4795.649 kb on - strand, within AO353_21865at 4795.716 kb on + strand, within AO353_21865at 4795.716 kb on + strand, within AO353_21865at 4795.905 kb on + strand, within AO353_21865at 4795.905 kb on + strand, within AO353_21865at 4795.905 kb on + strand, within AO353_21865at 4795.905 kb on + strand, within AO353_21865at 4795.906 kb on - strand, within AO353_21865at 4795.906 kb on - strand, within AO353_21865at 4795.906 kb on - strand, within AO353_21865at 4795.906 kb on - strand, within AO353_21865at 4795.906 kb on - strand, within AO353_21865at 4795.923 kb on - strand, within AO353_21865at 4795.923 kb on - strand, within AO353_21865at 4795.938 kb on + strand, within AO353_21865at 4795.938 kb on + strand, within AO353_21865at 4795.938 kb on + strand, within AO353_21865at 4795.938 kb on + strand, within AO353_21865at 4795.938 kb on + strand, within AO353_21865at 4795.938 kb on + strand, within AO353_21865at 4795.938 kb on + strand, within AO353_21865at 4795.938 kb on + strand, within AO353_21865at 4795.938 kb on + strand, within AO353_21865at 4795.939 kb on - strand, within AO353_21865at 4795.939 kb on - strand, within AO353_21865at 4795.939 kb on - strand, within AO353_21865at 4795.939 kb on - strand, within AO353_21865at 4795.939 kb on - strand, within AO353_21865at 4795.939 kb on - strand, within AO353_21865at 4795.939 kb on - strand, within AO353_21865at 4795.939 kb on - strand, within AO353_21865at 4796.077 kb on + strand, within AO353_21865at 4796.077 kb on + strand, within AO353_21865at 4796.111 kb on + strand, within AO353_21865at 4796.111 kb on + strand, within AO353_21865at 4796.111 kb on + strand, within AO353_21865at 4796.111 kb on + strand, within AO353_21865at 4796.111 kb on + strand, within AO353_21865at 4796.111 kb on + strand, within AO353_21865at 4796.111 kb on + strand, within AO353_21865at 4796.111 kb on + strand, within AO353_21865at 4796.111 kb on + strand, within AO353_21865at 4796.111 kb on + strand, within AO353_21865at 4796.111 kb on + strand, within AO353_21865at 4796.111 kb on + strand, within AO353_21865at 4796.111 kb on + strand, within AO353_21865at 4796.111 kb on + strand, within AO353_21865at 4796.112 kb on - strand, within AO353_21865at 4796.112 kb on - strand, within AO353_21865at 4796.112 kb on - strand, within AO353_21865at 4796.112 kb on - strand, within AO353_21865at 4796.112 kb on - strand, within AO353_21865at 4796.112 kb on - strand, within AO353_21865at 4796.112 kb on - strand, within AO353_21865at 4796.114 kb on - strand, within AO353_21865at 4796.114 kb on - strand, within AO353_21865at 4796.120 kb on + strand, within AO353_21865at 4796.179 kb on + strand, within AO353_21865at 4796.179 kb on + strand, within AO353_21865at 4796.180 kb on - strand, within AO353_21865at 4796.297 kb on + strand, within AO353_21865at 4796.298 kb on - strand, within AO353_21865at 4796.298 kb on - strand, within AO353_21865at 4796.298 kb on - strand, within AO353_21865at 4796.438 kb on - strandat 4796.498 kb on + strand, within AO353_21870at 4796.498 kb on + strandat 4796.498 kb on + strand, within AO353_21870at 4796.498 kb on + strand, within AO353_21870at 4796.498 kb on + strand, within AO353_21870at 4796.498 kb on + strand, within AO353_21870at 4796.499 kb on - strand, within AO353_21870at 4796.499 kb on - strand, within AO353_21870at 4796.499 kb on - strand, within AO353_21870at 4796.499 kb on - strand, within AO353_21870at 4796.499 kb on - strand, within AO353_21870at 4796.499 kb on - strand, within AO353_21870at 4796.499 kb on - strand, within AO353_21870at 4796.499 kb on - strand, within AO353_21870at 4796.499 kb on - strand, within AO353_21870at 4796.499 kb on - strand, within AO353_21870at 4796.569 kb on + strand, within AO353_21870at 4796.574 kb on + strand, within AO353_21870at 4796.657 kb on - strand, within AO353_21870at 4796.710 kb on + strand, within AO353_21870at 4796.710 kb on + strand, within AO353_21870at 4796.710 kb on + strand, within AO353_21870at 4796.710 kb on + strand, within AO353_21870at 4796.711 kb on - strand, within AO353_21870at 4796.724 kb on + strand, within AO353_21870at 4796.724 kb on + strand, within AO353_21870at 4796.725 kb on - strand, within AO353_21870at 4796.725 kb on - strand, within AO353_21870at 4796.772 kb on + strand, within AO353_21870at 4796.772 kb on + strand, within AO353_21870at 4796.773 kb on - strand, within AO353_21870at 4796.817 kb on + strand, within AO353_21870at 4796.817 kb on + strand, within AO353_21870at 4796.817 kb on + strand, within AO353_21870at 4796.818 kb on - strand, within AO353_21870at 4796.818 kb on - strand, within AO353_21870at 4796.818 kb on - strand, within AO353_21870at 4796.869 kb on + strand, within AO353_21870at 4796.870 kb on - strand, within AO353_21870at 4796.938 kb on - strand, within AO353_21870at 4796.996 kb on - strand, within AO353_21870at 4797.076 kb on - strand, within AO353_21870at 4797.077 kb on + strand, within AO353_21870at 4797.077 kb on + strand, within AO353_21870at 4797.077 kb on + strand, within AO353_21870at 4797.077 kb on + strand, within AO353_21870at 4797.077 kb on + strand, within AO353_21870at 4797.077 kb on + strand, within AO353_21870at 4797.078 kb on - strand, within AO353_21870at 4797.078 kb on - strand, within AO353_21870at 4797.078 kb on - strand, within AO353_21870at 4797.078 kb on - strand, within AO353_21870at 4797.078 kb on - strand, within AO353_21870at 4797.078 kb on - strand, within AO353_21870at 4797.078 kb on - strand, within AO353_21870at 4797.131 kb on + strand, within AO353_21870at 4797.131 kb on + strand, within AO353_21870at 4797.132 kb on - strand, within AO353_21870at 4797.132 kb on - strand, within AO353_21870at 4797.132 kb on - strand, within AO353_21870at 4797.161 kb on + strand, within AO353_21870at 4797.162 kb on - strand, within AO353_21870at 4797.342 kb on - strandat 4797.371 kb on - strandat 4797.383 kb on + strandat 4797.383 kb on + strandat 4797.383 kb on + strandat 4797.384 kb on - strandat 4797.384 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,794,555 + -0.0
4,794,555 + +1.2
4,794,555 + +0.2
4,794,556 - -0.5
4,794,556 - -1.8
4,794,556 - -2.7
4,794,619 - -0.2
4,794,783 - AO353_21860 0.23 +0.8
4,794,785 - AO353_21860 0.24 +1.6
4,794,785 - AO353_21860 0.24 +1.2
4,794,807 + AO353_21860 0.26 +0.3
4,794,807 + AO353_21860 0.26 -0.5
4,794,807 + AO353_21860 0.26 +0.3
4,794,808 - AO353_21860 0.26 -0.3
4,794,808 - AO353_21860 0.26 -0.8
4,794,808 - AO353_21860 0.26 -0.7
4,794,847 + AO353_21860 0.30 +0.1
4,794,847 + AO353_21860 0.30 -0.3
4,794,847 + AO353_21860 0.30 +0.6
4,794,847 + AO353_21860 0.30 -0.8
4,794,847 + AO353_21860 0.30 +0.3
4,794,847 + AO353_21860 0.30 -0.0
4,794,847 + AO353_21860 0.30 +0.4
4,794,848 - AO353_21860 0.30 +0.6
4,794,848 - AO353_21860 0.30 -0.5
4,794,848 - AO353_21860 0.30 +0.2
4,794,848 - AO353_21860 0.30 -0.1
4,794,848 - AO353_21860 0.30 +1.2
4,794,848 - AO353_21860 0.30 +1.6
4,794,848 - AO353_21860 0.30 -1.0
4,794,848 - AO353_21860 0.30 -0.0
4,794,848 - AO353_21860 0.30 -1.0
4,794,848 - AO353_21860 0.30 -0.1
4,794,848 - AO353_21860 0.30 +1.0
4,795,081 + AO353_21860 0.54 -0.0
4,795,081 + AO353_21860 0.54 +0.6
4,795,081 + AO353_21860 0.54 -0.9
4,795,081 + AO353_21860 0.54 +0.6
4,795,082 - AO353_21860 0.54 -0.1
4,795,082 - AO353_21860 0.54 -0.8
4,795,082 - AO353_21860 0.54 +0.6
4,795,272 + AO353_21860 0.73 +0.5
4,795,272 + AO353_21860 0.73 -0.5
4,795,273 - AO353_21860 0.73 -0.1
4,795,273 - AO353_21860 0.73 +1.8
4,795,273 - AO353_21860 0.73 +1.6
4,795,273 - AO353_21860 0.73 -1.2
4,795,273 - AO353_21860 0.73 -1.0
4,795,273 - AO353_21860 0.73 +1.2
4,795,273 - AO353_21860 0.73 -0.2
4,795,302 + AO353_21860 0.76 -0.7
4,795,302 + AO353_21860 0.76 -0.2
4,795,392 - AO353_21860 0.85 +0.4
4,795,392 - AO353_21860 0.85 +1.6
4,795,392 - AO353_21860 0.85 -2.1
4,795,419 + AO353_21860 0.88 +0.8
4,795,465 - -0.5
4,795,465 - -1.2
4,795,532 + +0.3
4,795,533 - +0.2
4,795,648 + AO353_21865 0.13 -0.7
4,795,649 - AO353_21865 0.13 -2.3
4,795,649 - AO353_21865 0.13 -0.4
4,795,716 + AO353_21865 0.21 +1.8
4,795,716 + AO353_21865 0.21 +1.0
4,795,905 + AO353_21865 0.43 -0.0
4,795,905 + AO353_21865 0.43 -2.6
4,795,905 + AO353_21865 0.43 +0.3
4,795,905 + AO353_21865 0.43 -0.5
4,795,906 - AO353_21865 0.43 +0.2
4,795,906 - AO353_21865 0.43 -0.7
4,795,906 - AO353_21865 0.43 -1.7
4,795,906 - AO353_21865 0.43 -0.5
4,795,906 - AO353_21865 0.43 +1.0
4,795,923 - AO353_21865 0.45 +0.2
4,795,923 - AO353_21865 0.45 +1.1
4,795,938 + AO353_21865 0.47 -0.4
4,795,938 + AO353_21865 0.47 -1.3
4,795,938 + AO353_21865 0.47 -1.4
4,795,938 + AO353_21865 0.47 -0.4
4,795,938 + AO353_21865 0.47 -0.0
4,795,938 + AO353_21865 0.47 +0.6
4,795,938 + AO353_21865 0.47 +0.3
4,795,938 + AO353_21865 0.47 +1.1
4,795,938 + AO353_21865 0.47 -0.3
4,795,939 - AO353_21865 0.47 -1.4
4,795,939 - AO353_21865 0.47 -0.8
4,795,939 - AO353_21865 0.47 -1.0
4,795,939 - AO353_21865 0.47 -1.7
4,795,939 - AO353_21865 0.47 -1.0
4,795,939 - AO353_21865 0.47 -1.1
4,795,939 - AO353_21865 0.47 +0.3
4,795,939 - AO353_21865 0.47 -0.8
4,796,077 + AO353_21865 0.63 +0.6
4,796,077 + AO353_21865 0.63 -0.6
4,796,111 + AO353_21865 0.67 -0.1
4,796,111 + AO353_21865 0.67 +0.2
4,796,111 + AO353_21865 0.67 -0.4
4,796,111 + AO353_21865 0.67 +0.1
4,796,111 + AO353_21865 0.67 +2.3
4,796,111 + AO353_21865 0.67 +0.6
4,796,111 + AO353_21865 0.67 +0.3
4,796,111 + AO353_21865 0.67 -0.5
4,796,111 + AO353_21865 0.67 +0.5
4,796,111 + AO353_21865 0.67 -0.2
4,796,111 + AO353_21865 0.67 -1.4
4,796,111 + AO353_21865 0.67 +1.7
4,796,111 + AO353_21865 0.67 +1.6
4,796,111 + AO353_21865 0.67 -1.4
4,796,112 - AO353_21865 0.67 +0.1
4,796,112 - AO353_21865 0.67 -2.2
4,796,112 - AO353_21865 0.67 +0.1
4,796,112 - AO353_21865 0.67 -0.0
4,796,112 - AO353_21865 0.67 +0.8
4,796,112 - AO353_21865 0.67 -0.9
4,796,112 - AO353_21865 0.67 +1.4
4,796,114 - AO353_21865 0.67 +1.3
4,796,114 - AO353_21865 0.67 +0.6
4,796,120 + AO353_21865 0.68 -0.7
4,796,179 + AO353_21865 0.75 +0.9
4,796,179 + AO353_21865 0.75 -0.4
4,796,180 - AO353_21865 0.75 +0.3
4,796,297 + AO353_21865 0.89 +0.6
4,796,298 - AO353_21865 0.89 -0.8
4,796,298 - AO353_21865 0.89 +0.8
4,796,298 - AO353_21865 0.89 +0.9
4,796,438 - -1.9
4,796,498 + AO353_21870 0.11 -1.4
4,796,498 + +1.6
4,796,498 + AO353_21870 0.11 +0.6
4,796,498 + AO353_21870 0.11 -1.1
4,796,498 + AO353_21870 0.11 -2.0
4,796,498 + AO353_21870 0.11 -1.4
4,796,499 - AO353_21870 0.12 -0.2
4,796,499 - AO353_21870 0.12 +0.1
4,796,499 - AO353_21870 0.12 -0.4
4,796,499 - AO353_21870 0.12 -1.0
4,796,499 - AO353_21870 0.12 -0.4
4,796,499 - AO353_21870 0.12 -0.3
4,796,499 - AO353_21870 0.12 -0.4
4,796,499 - AO353_21870 0.12 +0.7
4,796,499 - AO353_21870 0.12 -0.4
4,796,499 - AO353_21870 0.12 -0.9
4,796,569 + AO353_21870 0.19 -1.2
4,796,574 + AO353_21870 0.20 -0.0
4,796,657 - AO353_21870 0.28 -0.7
4,796,710 + AO353_21870 0.34 -2.4
4,796,710 + AO353_21870 0.34 -0.5
4,796,710 + AO353_21870 0.34 -0.5
4,796,710 + AO353_21870 0.34 -0.5
4,796,711 - AO353_21870 0.34 -2.1
4,796,724 + AO353_21870 0.35 -0.3
4,796,724 + AO353_21870 0.35 -0.0
4,796,725 - AO353_21870 0.35 -1.1
4,796,725 - AO353_21870 0.35 +0.5
4,796,772 + AO353_21870 0.40 +0.3
4,796,772 + AO353_21870 0.40 -0.4
4,796,773 - AO353_21870 0.41 -0.0
4,796,817 + AO353_21870 0.45 +1.1
4,796,817 + AO353_21870 0.45 +0.0
4,796,817 + AO353_21870 0.45 +0.3
4,796,818 - AO353_21870 0.45 +1.1
4,796,818 - AO353_21870 0.45 -0.6
4,796,818 - AO353_21870 0.45 -0.7
4,796,869 + AO353_21870 0.51 -0.0
4,796,870 - AO353_21870 0.51 +0.6
4,796,938 - AO353_21870 0.58 -1.7
4,796,996 - AO353_21870 0.64 +0.7
4,797,076 - AO353_21870 0.72 +1.3
4,797,077 + AO353_21870 0.73 -0.5
4,797,077 + AO353_21870 0.73 +1.3
4,797,077 + AO353_21870 0.73 -0.7
4,797,077 + AO353_21870 0.73 -0.3
4,797,077 + AO353_21870 0.73 +0.4
4,797,077 + AO353_21870 0.73 -0.3
4,797,078 - AO353_21870 0.73 +1.6
4,797,078 - AO353_21870 0.73 -0.1
4,797,078 - AO353_21870 0.73 +0.3
4,797,078 - AO353_21870 0.73 -0.5
4,797,078 - AO353_21870 0.73 -1.2
4,797,078 - AO353_21870 0.73 +0.2
4,797,078 - AO353_21870 0.73 -0.0
4,797,131 + AO353_21870 0.78 -1.4
4,797,131 + AO353_21870 0.78 -1.3
4,797,132 - AO353_21870 0.78 +0.3
4,797,132 - AO353_21870 0.78 +0.6
4,797,132 - AO353_21870 0.78 -0.7
4,797,161 + AO353_21870 0.81 +0.3
4,797,162 - AO353_21870 0.82 +0.2
4,797,342 - -1.8
4,797,371 - -0.5
4,797,383 + +0.3
4,797,383 + +0.4
4,797,383 + -1.3
4,797,384 - -1.2
4,797,384 - -0.9

Or see this region's nucleotide sequence