Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22975

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22970 and ABZR87_RS22975 are separated by 238 nucleotidesABZR87_RS22975 and ABZR87_RS22980 are separated by 137 nucleotidesABZR87_RS22980 and ABZR87_RS22985 are separated by 358 nucleotides ABZR87_RS22970: ABZR87_RS22970 - cystathionine gamma-synthase family protein, at 1,511,368 to 1,512,603 _RS22970 ABZR87_RS22975: ABZR87_RS22975 - ABC transporter transmembrane domain-containing protein, at 1,512,842 to 1,515,760 _RS22975 ABZR87_RS22980: ABZR87_RS22980 - hypothetical protein, at 1,515,898 to 1,516,332 _RS22980 ABZR87_RS22985: ABZR87_RS22985 - glycosyltransferase family 1 protein, at 1,516,691 to 1,518,004 _RS22985 Position (kb) 1512 1513 1514 1515 1516Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1511.912 kb on + strand, within ABZR87_RS22970at 1511.912 kb on + strand, within ABZR87_RS22970at 1511.912 kb on + strand, within ABZR87_RS22970at 1511.912 kb on + strand, within ABZR87_RS22970at 1511.913 kb on - strand, within ABZR87_RS22970at 1511.993 kb on + strand, within ABZR87_RS22970at 1511.994 kb on - strand, within ABZR87_RS22970at 1511.994 kb on - strand, within ABZR87_RS22970at 1511.994 kb on - strand, within ABZR87_RS22970at 1511.994 kb on - strand, within ABZR87_RS22970at 1512.080 kb on + strand, within ABZR87_RS22970at 1512.081 kb on - strand, within ABZR87_RS22970at 1512.177 kb on + strand, within ABZR87_RS22970at 1512.177 kb on + strand, within ABZR87_RS22970at 1512.449 kb on + strand, within ABZR87_RS22970at 1512.449 kb on + strand, within ABZR87_RS22970at 1512.450 kb on - strand, within ABZR87_RS22970at 1512.450 kb on - strand, within ABZR87_RS22970at 1512.450 kb on - strand, within ABZR87_RS22970at 1512.456 kb on - strand, within ABZR87_RS22970at 1512.503 kb on + strandat 1512.509 kb on + strandat 1512.509 kb on + strandat 1512.509 kb on + strandat 1512.510 kb on - strandat 1512.510 kb on - strandat 1512.510 kb on - strandat 1512.522 kb on + strandat 1512.522 kb on + strandat 1512.522 kb on + strandat 1512.522 kb on + strandat 1512.523 kb on - strandat 1512.523 kb on - strandat 1512.523 kb on - strandat 1512.523 kb on - strandat 1512.523 kb on - strandat 1512.523 kb on - strandat 1512.523 kb on - strandat 1512.523 kb on - strandat 1512.523 kb on - strandat 1512.523 kb on - strandat 1512.523 kb on - strandat 1512.545 kb on + strandat 1512.546 kb on - strandat 1512.546 kb on - strandat 1512.632 kb on + strandat 1512.633 kb on - strandat 1513.019 kb on + strandat 1513.019 kb on + strandat 1513.020 kb on - strandat 1513.020 kb on - strandat 1513.026 kb on + strandat 1513.027 kb on - strandat 1513.027 kb on - strandat 1513.027 kb on - strandat 1513.299 kb on - strand, within ABZR87_RS22975at 1513.311 kb on - strand, within ABZR87_RS22975at 1513.343 kb on + strand, within ABZR87_RS22975at 1513.343 kb on + strand, within ABZR87_RS22975at 1513.344 kb on - strand, within ABZR87_RS22975at 1513.469 kb on + strand, within ABZR87_RS22975at 1513.469 kb on + strand, within ABZR87_RS22975at 1513.470 kb on - strand, within ABZR87_RS22975at 1513.470 kb on - strand, within ABZR87_RS22975at 1513.470 kb on - strand, within ABZR87_RS22975at 1513.470 kb on - strand, within ABZR87_RS22975at 1513.470 kb on - strand, within ABZR87_RS22975at 1513.599 kb on + strand, within ABZR87_RS22975at 1513.599 kb on + strand, within ABZR87_RS22975at 1513.600 kb on - strand, within ABZR87_RS22975at 1513.600 kb on - strand, within ABZR87_RS22975at 1513.679 kb on + strand, within ABZR87_RS22975at 1513.679 kb on + strand, within ABZR87_RS22975at 1513.679 kb on + strand, within ABZR87_RS22975at 1513.680 kb on - strand, within ABZR87_RS22975at 1513.680 kb on - strand, within ABZR87_RS22975at 1513.680 kb on - strand, within ABZR87_RS22975at 1513.680 kb on - strand, within ABZR87_RS22975at 1513.680 kb on - strand, within ABZR87_RS22975at 1513.991 kb on + strand, within ABZR87_RS22975at 1513.991 kb on + strand, within ABZR87_RS22975at 1514.117 kb on + strand, within ABZR87_RS22975at 1514.117 kb on + strand, within ABZR87_RS22975at 1514.118 kb on - strand, within ABZR87_RS22975at 1514.130 kb on - strand, within ABZR87_RS22975at 1514.183 kb on + strand, within ABZR87_RS22975at 1514.184 kb on - strand, within ABZR87_RS22975at 1514.525 kb on + strand, within ABZR87_RS22975at 1514.525 kb on + strand, within ABZR87_RS22975at 1514.675 kb on + strand, within ABZR87_RS22975at 1515.170 kb on + strand, within ABZR87_RS22975at 1515.170 kb on + strand, within ABZR87_RS22975at 1515.170 kb on + strand, within ABZR87_RS22975at 1515.170 kb on + strand, within ABZR87_RS22975at 1515.170 kb on + strand, within ABZR87_RS22975at 1515.171 kb on - strand, within ABZR87_RS22975at 1515.171 kb on - strand, within ABZR87_RS22975at 1515.171 kb on - strand, within ABZR87_RS22975at 1515.358 kb on - strand, within ABZR87_RS22975at 1515.369 kb on - strand, within ABZR87_RS22975at 1515.390 kb on - strand, within ABZR87_RS22975at 1515.582 kb on - strandat 1515.758 kb on + strandat 1515.758 kb on + strandat 1515.758 kb on + strandat 1515.852 kb on + strandat 1515.852 kb on + strandat 1515.852 kb on + strandat 1515.853 kb on - strandat 1515.853 kb on - strandat 1516.028 kb on - strand, within ABZR87_RS22980at 1516.033 kb on + strand, within ABZR87_RS22980at 1516.078 kb on + strand, within ABZR87_RS22980at 1516.237 kb on + strand, within ABZR87_RS22980at 1516.414 kb on + strandat 1516.414 kb on + strandat 1516.414 kb on + strandat 1516.414 kb on + strandat 1516.415 kb on - strandat 1516.415 kb on - strandat 1516.592 kb on - strandat 1516.675 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,511,912 + ABZR87_RS22970 0.44 -3.7
1,511,912 + ABZR87_RS22970 0.44 -2.8
1,511,912 + ABZR87_RS22970 0.44 +0.6
1,511,912 + ABZR87_RS22970 0.44 -1.8
1,511,913 - ABZR87_RS22970 0.44 -0.9
1,511,993 + ABZR87_RS22970 0.51 -0.4
1,511,994 - ABZR87_RS22970 0.51 -2.6
1,511,994 - ABZR87_RS22970 0.51 -3.2
1,511,994 - ABZR87_RS22970 0.51 -2.1
1,511,994 - ABZR87_RS22970 0.51 -3.7
1,512,080 + ABZR87_RS22970 0.58 -0.0
1,512,081 - ABZR87_RS22970 0.58 -0.8
1,512,177 + ABZR87_RS22970 0.65 -1.3
1,512,177 + ABZR87_RS22970 0.65 -2.1
1,512,449 + ABZR87_RS22970 0.87 -2.3
1,512,449 + ABZR87_RS22970 0.87 -2.7
1,512,450 - ABZR87_RS22970 0.88 -1.2
1,512,450 - ABZR87_RS22970 0.88 -0.7
1,512,450 - ABZR87_RS22970 0.88 -3.4
1,512,456 - ABZR87_RS22970 0.88 -1.3
1,512,503 + -2.6
1,512,509 + -1.6
1,512,509 + -1.0
1,512,509 + -1.5
1,512,510 - -2.2
1,512,510 - -3.3
1,512,510 - -1.1
1,512,522 + -2.0
1,512,522 + -3.0
1,512,522 + -2.0
1,512,522 + -1.8
1,512,523 - -2.3
1,512,523 - -1.5
1,512,523 - -1.0
1,512,523 - -1.6
1,512,523 - -3.2
1,512,523 - -1.7
1,512,523 - +2.7
1,512,523 - -1.5
1,512,523 - -1.3
1,512,523 - -1.3
1,512,523 - -2.6
1,512,545 + -0.2
1,512,546 - +1.7
1,512,546 - -0.7
1,512,632 + -1.0
1,512,633 - +0.6
1,513,019 + +4.3
1,513,019 + +1.2
1,513,020 - -0.8
1,513,020 - -0.2
1,513,026 + -1.9
1,513,027 - -0.3
1,513,027 - +0.9
1,513,027 - -0.4
1,513,299 - ABZR87_RS22975 0.16 +3.7
1,513,311 - ABZR87_RS22975 0.16 +1.2
1,513,343 + ABZR87_RS22975 0.17 -0.0
1,513,343 + ABZR87_RS22975 0.17 +0.2
1,513,344 - ABZR87_RS22975 0.17 -0.8
1,513,469 + ABZR87_RS22975 0.21 -0.2
1,513,469 + ABZR87_RS22975 0.21 -0.5
1,513,470 - ABZR87_RS22975 0.22 +0.7
1,513,470 - ABZR87_RS22975 0.22 +2.2
1,513,470 - ABZR87_RS22975 0.22 +0.5
1,513,470 - ABZR87_RS22975 0.22 +0.5
1,513,470 - ABZR87_RS22975 0.22 +0.4
1,513,599 + ABZR87_RS22975 0.26 +0.3
1,513,599 + ABZR87_RS22975 0.26 -1.0
1,513,600 - ABZR87_RS22975 0.26 +0.6
1,513,600 - ABZR87_RS22975 0.26 -1.6
1,513,679 + ABZR87_RS22975 0.29 +1.3
1,513,679 + ABZR87_RS22975 0.29 +0.6
1,513,679 + ABZR87_RS22975 0.29 -0.1
1,513,680 - ABZR87_RS22975 0.29 +3.8
1,513,680 - ABZR87_RS22975 0.29 +0.0
1,513,680 - ABZR87_RS22975 0.29 -0.4
1,513,680 - ABZR87_RS22975 0.29 +0.2
1,513,680 - ABZR87_RS22975 0.29 -0.3
1,513,991 + ABZR87_RS22975 0.39 +1.0
1,513,991 + ABZR87_RS22975 0.39 +1.2
1,514,117 + ABZR87_RS22975 0.44 -1.0
1,514,117 + ABZR87_RS22975 0.44 +2.0
1,514,118 - ABZR87_RS22975 0.44 +0.7
1,514,130 - ABZR87_RS22975 0.44 +0.3
1,514,183 + ABZR87_RS22975 0.46 -0.2
1,514,184 - ABZR87_RS22975 0.46 -1.2
1,514,525 + ABZR87_RS22975 0.58 -1.5
1,514,525 + ABZR87_RS22975 0.58 -0.1
1,514,675 + ABZR87_RS22975 0.63 +0.1
1,515,170 + ABZR87_RS22975 0.80 -0.1
1,515,170 + ABZR87_RS22975 0.80 -0.2
1,515,170 + ABZR87_RS22975 0.80 -0.0
1,515,170 + ABZR87_RS22975 0.80 +0.8
1,515,170 + ABZR87_RS22975 0.80 +3.7
1,515,171 - ABZR87_RS22975 0.80 +0.1
1,515,171 - ABZR87_RS22975 0.80 -0.9
1,515,171 - ABZR87_RS22975 0.80 -0.7
1,515,358 - ABZR87_RS22975 0.86 -0.3
1,515,369 - ABZR87_RS22975 0.87 +0.5
1,515,390 - ABZR87_RS22975 0.87 -0.7
1,515,582 - -0.7
1,515,758 + -1.5
1,515,758 + -0.3
1,515,758 + +0.6
1,515,852 + +0.4
1,515,852 + +1.1
1,515,852 + -0.0
1,515,853 - -0.5
1,515,853 - +2.7
1,516,028 - ABZR87_RS22980 0.30 +0.0
1,516,033 + ABZR87_RS22980 0.31 -0.8
1,516,078 + ABZR87_RS22980 0.41 -1.0
1,516,237 + ABZR87_RS22980 0.78 +0.2
1,516,414 + -2.9
1,516,414 + +0.0
1,516,414 + +2.8
1,516,414 + -3.0
1,516,415 - -0.7
1,516,415 - +0.7
1,516,592 - -0.2
1,516,675 + -1.7

Or see this region's nucleotide sequence