Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22050

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22045 and ABZR87_RS22050 are separated by 155 nucleotidesABZR87_RS22050 and ABZR87_RS22055 are separated by 380 nucleotides ABZR87_RS22045: ABZR87_RS22045 - GNAT family N-acetyltransferase, at 1,314,846 to 1,315,394 _RS22045 ABZR87_RS22050: ABZR87_RS22050 - DedA family protein/thiosulfate sulfurtransferase GlpE, at 1,315,550 to 1,316,527 _RS22050 ABZR87_RS22055: ABZR87_RS22055 - flagellar hook-length control protein FliK, at 1,316,908 to 1,318,500 _RS22055 Position (kb) 1315 1316 1317Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1314.698 kb on - strandat 1314.718 kb on - strandat 1314.896 kb on - strandat 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.085 kb on - strand, within ABZR87_RS22045at 1315.085 kb on - strand, within ABZR87_RS22045at 1315.085 kb on - strand, within ABZR87_RS22045at 1315.085 kb on - strand, within ABZR87_RS22045at 1315.112 kb on - strand, within ABZR87_RS22045at 1315.112 kb on - strand, within ABZR87_RS22045at 1315.141 kb on + strand, within ABZR87_RS22045at 1315.141 kb on + strand, within ABZR87_RS22045at 1315.142 kb on - strand, within ABZR87_RS22045at 1315.142 kb on - strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.271 kb on + strand, within ABZR87_RS22045at 1315.271 kb on + strand, within ABZR87_RS22045at 1315.272 kb on - strand, within ABZR87_RS22045at 1315.288 kb on + strand, within ABZR87_RS22045at 1315.288 kb on + strand, within ABZR87_RS22045at 1315.289 kb on - strand, within ABZR87_RS22045at 1315.292 kb on + strand, within ABZR87_RS22045at 1315.293 kb on - strand, within ABZR87_RS22045at 1315.293 kb on - strand, within ABZR87_RS22045at 1315.301 kb on + strand, within ABZR87_RS22045at 1315.370 kb on + strandat 1315.509 kb on + strandat 1315.691 kb on + strand, within ABZR87_RS22050at 1315.692 kb on - strand, within ABZR87_RS22050at 1315.692 kb on - strand, within ABZR87_RS22050at 1315.751 kb on + strand, within ABZR87_RS22050at 1315.752 kb on - strand, within ABZR87_RS22050at 1315.752 kb on - strand, within ABZR87_RS22050at 1315.804 kb on - strand, within ABZR87_RS22050at 1315.961 kb on + strand, within ABZR87_RS22050at 1315.962 kb on - strand, within ABZR87_RS22050at 1316.103 kb on + strand, within ABZR87_RS22050at 1316.103 kb on + strand, within ABZR87_RS22050at 1316.103 kb on + strand, within ABZR87_RS22050at 1316.103 kb on + strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.109 kb on + strand, within ABZR87_RS22050at 1316.110 kb on - strand, within ABZR87_RS22050at 1316.110 kb on - strand, within ABZR87_RS22050at 1316.110 kb on - strand, within ABZR87_RS22050at 1316.250 kb on + strand, within ABZR87_RS22050at 1316.250 kb on + strand, within ABZR87_RS22050at 1316.251 kb on - strand, within ABZR87_RS22050at 1316.251 kb on - strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.346 kb on - strand, within ABZR87_RS22050at 1316.346 kb on - strand, within ABZR87_RS22050at 1316.346 kb on - strand, within ABZR87_RS22050at 1316.463 kb on - strandat 1316.463 kb on - strandat 1316.481 kb on + strandat 1316.482 kb on - strandat 1316.605 kb on + strandat 1316.605 kb on + strandat 1316.606 kb on - strandat 1316.606 kb on - strandat 1316.609 kb on + strandat 1316.609 kb on + strandat 1316.609 kb on + strandat 1316.744 kb on + strandat 1316.745 kb on - strandat 1316.774 kb on + strandat 1316.774 kb on + strandat 1316.774 kb on + strandat 1316.775 kb on - strandat 1316.798 kb on - strandat 1316.798 kb on - strandat 1316.798 kb on - strandat 1316.856 kb on + strandat 1316.856 kb on + strandat 1316.857 kb on - strandat 1316.859 kb on + strandat 1316.883 kb on + strandat 1316.883 kb on + strandat 1317.522 kb on + strand, within ABZR87_RS22055

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,314,698 - +0.4
1,314,718 - -0.8
1,314,896 - -0.3
1,315,084 + ABZR87_RS22045 0.43 +0.5
1,315,084 + ABZR87_RS22045 0.43 -1.8
1,315,084 + ABZR87_RS22045 0.43 -0.1
1,315,084 + ABZR87_RS22045 0.43 -0.6
1,315,084 + ABZR87_RS22045 0.43 -0.4
1,315,084 + ABZR87_RS22045 0.43 -0.7
1,315,084 + ABZR87_RS22045 0.43 +1.2
1,315,085 - ABZR87_RS22045 0.44 +0.3
1,315,085 - ABZR87_RS22045 0.44 -0.1
1,315,085 - ABZR87_RS22045 0.44 -0.3
1,315,085 - ABZR87_RS22045 0.44 -0.9
1,315,112 - ABZR87_RS22045 0.48 -0.6
1,315,112 - ABZR87_RS22045 0.48 +0.8
1,315,141 + ABZR87_RS22045 0.54 -1.5
1,315,141 + ABZR87_RS22045 0.54 +0.5
1,315,142 - ABZR87_RS22045 0.54 -0.2
1,315,142 - ABZR87_RS22045 0.54 +0.5
1,315,183 + ABZR87_RS22045 0.61 +0.9
1,315,183 + ABZR87_RS22045 0.61 -0.3
1,315,183 + ABZR87_RS22045 0.61 +0.1
1,315,183 + ABZR87_RS22045 0.61 +0.8
1,315,183 + ABZR87_RS22045 0.61 -0.1
1,315,183 + ABZR87_RS22045 0.61 -0.6
1,315,183 + ABZR87_RS22045 0.61 -0.4
1,315,183 + ABZR87_RS22045 0.61 +0.8
1,315,183 + ABZR87_RS22045 0.61 -0.8
1,315,184 - ABZR87_RS22045 0.62 -0.7
1,315,184 - ABZR87_RS22045 0.62 -1.6
1,315,184 - ABZR87_RS22045 0.62 +0.9
1,315,184 - ABZR87_RS22045 0.62 +1.0
1,315,184 - ABZR87_RS22045 0.62 +0.2
1,315,184 - ABZR87_RS22045 0.62 -0.0
1,315,184 - ABZR87_RS22045 0.62 -0.1
1,315,184 - ABZR87_RS22045 0.62 +1.3
1,315,184 - ABZR87_RS22045 0.62 -0.7
1,315,271 + ABZR87_RS22045 0.77 -1.2
1,315,271 + ABZR87_RS22045 0.77 -2.0
1,315,272 - ABZR87_RS22045 0.78 +0.3
1,315,288 + ABZR87_RS22045 0.81 -1.5
1,315,288 + ABZR87_RS22045 0.81 -0.2
1,315,289 - ABZR87_RS22045 0.81 +0.1
1,315,292 + ABZR87_RS22045 0.81 +0.2
1,315,293 - ABZR87_RS22045 0.81 -3.8
1,315,293 - ABZR87_RS22045 0.81 -0.8
1,315,301 + ABZR87_RS22045 0.83 +0.6
1,315,370 + -1.0
1,315,509 + +0.0
1,315,691 + ABZR87_RS22050 0.14 -2.4
1,315,692 - ABZR87_RS22050 0.15 -0.3
1,315,692 - ABZR87_RS22050 0.15 -0.8
1,315,751 + ABZR87_RS22050 0.21 -0.7
1,315,752 - ABZR87_RS22050 0.21 -0.6
1,315,752 - ABZR87_RS22050 0.21 -0.2
1,315,804 - ABZR87_RS22050 0.26 +0.9
1,315,961 + ABZR87_RS22050 0.42 -0.8
1,315,962 - ABZR87_RS22050 0.42 -1.5
1,316,103 + ABZR87_RS22050 0.57 +1.0
1,316,103 + ABZR87_RS22050 0.57 -0.7
1,316,103 + ABZR87_RS22050 0.57 -1.8
1,316,103 + ABZR87_RS22050 0.57 -0.0
1,316,104 - ABZR87_RS22050 0.57 -1.9
1,316,104 - ABZR87_RS22050 0.57 -0.2
1,316,104 - ABZR87_RS22050 0.57 +0.1
1,316,104 - ABZR87_RS22050 0.57 -0.1
1,316,104 - ABZR87_RS22050 0.57 +1.5
1,316,104 - ABZR87_RS22050 0.57 +0.2
1,316,105 + ABZR87_RS22050 0.57 -0.0
1,316,105 + ABZR87_RS22050 0.57 -0.2
1,316,105 + ABZR87_RS22050 0.57 +0.2
1,316,105 + ABZR87_RS22050 0.57 -0.1
1,316,105 + ABZR87_RS22050 0.57 +1.5
1,316,105 + ABZR87_RS22050 0.57 -0.6
1,316,105 + ABZR87_RS22050 0.57 -0.8
1,316,105 + ABZR87_RS22050 0.57 +0.5
1,316,105 + ABZR87_RS22050 0.57 -1.4
1,316,105 + ABZR87_RS22050 0.57 -0.4
1,316,106 - ABZR87_RS22050 0.57 +0.1
1,316,106 - ABZR87_RS22050 0.57 -1.9
1,316,106 - ABZR87_RS22050 0.57 -1.6
1,316,106 - ABZR87_RS22050 0.57 -0.4
1,316,106 - ABZR87_RS22050 0.57 -0.4
1,316,106 - ABZR87_RS22050 0.57 -1.0
1,316,106 - ABZR87_RS22050 0.57 -0.8
1,316,106 - ABZR87_RS22050 0.57 +0.2
1,316,106 - ABZR87_RS22050 0.57 +0.7
1,316,109 + ABZR87_RS22050 0.57 -0.4
1,316,110 - ABZR87_RS22050 0.57 +1.7
1,316,110 - ABZR87_RS22050 0.57 -0.1
1,316,110 - ABZR87_RS22050 0.57 -0.7
1,316,250 + ABZR87_RS22050 0.72 -0.2
1,316,250 + ABZR87_RS22050 0.72 -0.5
1,316,251 - ABZR87_RS22050 0.72 +0.4
1,316,251 - ABZR87_RS22050 0.72 +0.7
1,316,282 + ABZR87_RS22050 0.75 +0.0
1,316,282 + ABZR87_RS22050 0.75 -0.4
1,316,282 + ABZR87_RS22050 0.75 +2.1
1,316,282 + ABZR87_RS22050 0.75 +0.6
1,316,282 + ABZR87_RS22050 0.75 -2.2
1,316,283 - ABZR87_RS22050 0.75 +0.3
1,316,283 - ABZR87_RS22050 0.75 +0.2
1,316,283 - ABZR87_RS22050 0.75 -0.2
1,316,283 - ABZR87_RS22050 0.75 +0.3
1,316,283 - ABZR87_RS22050 0.75 +0.0
1,316,345 + ABZR87_RS22050 0.81 -0.2
1,316,345 + ABZR87_RS22050 0.81 +0.1
1,316,345 + ABZR87_RS22050 0.81 -0.1
1,316,345 + ABZR87_RS22050 0.81 +0.2
1,316,345 + ABZR87_RS22050 0.81 +0.2
1,316,346 - ABZR87_RS22050 0.81 -0.8
1,316,346 - ABZR87_RS22050 0.81 -0.3
1,316,346 - ABZR87_RS22050 0.81 +0.6
1,316,463 - +0.2
1,316,463 - +1.9
1,316,481 + +1.0
1,316,482 - -1.9
1,316,605 + -0.7
1,316,605 + +0.5
1,316,606 - +0.2
1,316,606 - +0.8
1,316,609 + +1.0
1,316,609 + +0.5
1,316,609 + +1.0
1,316,744 + +0.3
1,316,745 - +0.8
1,316,774 + +2.4
1,316,774 + +0.1
1,316,774 + -0.2
1,316,775 - -1.0
1,316,798 - +0.4
1,316,798 - +0.9
1,316,798 - +0.7
1,316,856 + +0.1
1,316,856 + -0.9
1,316,857 - +1.9
1,316,859 + -0.9
1,316,883 + -0.8
1,316,883 + -0.6
1,317,522 + ABZR87_RS22055 0.39 +3.3

Or see this region's nucleotide sequence