Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20385

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20380 and ABZR87_RS20385 are separated by 58 nucleotidesABZR87_RS20385 and ABZR87_RS20390 are separated by 9 nucleotides ABZR87_RS20380: ABZR87_RS20380 - ABC transporter substrate-binding protein, at 960,348 to 961,355 _RS20380 ABZR87_RS20385: ABZR87_RS20385 - class II aldolase/adducin family protein, at 961,414 to 962,253 _RS20385 ABZR87_RS20390: ABZR87_RS20390 - LLM class flavin-dependent oxidoreductase, at 962,263 to 963,354 _RS20390 Position (kb) 961 962 963Strain fitness (log2 ratio) -2 -1 0 1 2 3at 960.439 kb on + strandat 960.487 kb on + strand, within ABZR87_RS20380at 960.488 kb on - strand, within ABZR87_RS20380at 960.488 kb on - strand, within ABZR87_RS20380at 960.541 kb on + strand, within ABZR87_RS20380at 960.542 kb on - strand, within ABZR87_RS20380at 960.542 kb on - strand, within ABZR87_RS20380at 960.542 kb on - strand, within ABZR87_RS20380at 960.724 kb on + strand, within ABZR87_RS20380at 960.725 kb on - strand, within ABZR87_RS20380at 960.725 kb on - strand, within ABZR87_RS20380at 960.754 kb on + strand, within ABZR87_RS20380at 960.755 kb on - strand, within ABZR87_RS20380at 961.132 kb on + strand, within ABZR87_RS20380at 961.132 kb on + strand, within ABZR87_RS20380at 961.132 kb on + strand, within ABZR87_RS20380at 961.132 kb on + strand, within ABZR87_RS20380at 961.255 kb on + strandat 961.255 kb on + strandat 961.256 kb on - strandat 961.317 kb on + strandat 961.318 kb on - strandat 961.383 kb on - strandat 961.416 kb on - strandat 961.454 kb on + strandat 961.509 kb on + strand, within ABZR87_RS20385at 961.509 kb on + strand, within ABZR87_RS20385at 961.509 kb on + strand, within ABZR87_RS20385at 961.598 kb on + strand, within ABZR87_RS20385at 961.598 kb on + strand, within ABZR87_RS20385at 961.599 kb on - strand, within ABZR87_RS20385at 961.599 kb on - strand, within ABZR87_RS20385at 961.599 kb on - strand, within ABZR87_RS20385at 961.599 kb on - strand, within ABZR87_RS20385at 961.772 kb on + strand, within ABZR87_RS20385at 961.772 kb on + strand, within ABZR87_RS20385at 961.773 kb on - strand, within ABZR87_RS20385at 961.838 kb on + strand, within ABZR87_RS20385at 961.839 kb on - strand, within ABZR87_RS20385at 961.851 kb on + strand, within ABZR87_RS20385at 961.852 kb on - strand, within ABZR87_RS20385at 962.396 kb on + strand, within ABZR87_RS20390at 962.396 kb on + strand, within ABZR87_RS20390at 962.396 kb on + strand, within ABZR87_RS20390at 962.396 kb on + strand, within ABZR87_RS20390at 962.397 kb on - strand, within ABZR87_RS20390at 962.399 kb on + strand, within ABZR87_RS20390at 962.771 kb on + strand, within ABZR87_RS20390at 962.771 kb on + strand, within ABZR87_RS20390at 962.807 kb on - strand, within ABZR87_RS20390at 962.828 kb on + strand, within ABZR87_RS20390at 962.829 kb on - strand, within ABZR87_RS20390at 962.888 kb on + strand, within ABZR87_RS20390at 962.889 kb on - strand, within ABZR87_RS20390at 962.889 kb on - strand, within ABZR87_RS20390at 962.889 kb on - strand, within ABZR87_RS20390at 962.889 kb on - strand, within ABZR87_RS20390at 962.951 kb on + strand, within ABZR87_RS20390at 962.952 kb on - strand, within ABZR87_RS20390at 963.165 kb on - strand, within ABZR87_RS20390at 963.165 kb on - strand, within ABZR87_RS20390

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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960,439 + -0.3
960,487 + ABZR87_RS20380 0.14 -0.8
960,488 - ABZR87_RS20380 0.14 +2.7
960,488 - ABZR87_RS20380 0.14 -1.1
960,541 + ABZR87_RS20380 0.19 -1.9
960,542 - ABZR87_RS20380 0.19 -0.4
960,542 - ABZR87_RS20380 0.19 -0.4
960,542 - ABZR87_RS20380 0.19 -0.0
960,724 + ABZR87_RS20380 0.37 -0.1
960,725 - ABZR87_RS20380 0.37 +1.0
960,725 - ABZR87_RS20380 0.37 -0.5
960,754 + ABZR87_RS20380 0.40 +1.2
960,755 - ABZR87_RS20380 0.40 -0.4
961,132 + ABZR87_RS20380 0.78 -0.6
961,132 + ABZR87_RS20380 0.78 +0.2
961,132 + ABZR87_RS20380 0.78 +2.1
961,132 + ABZR87_RS20380 0.78 -2.7
961,255 + +0.3
961,255 + +0.6
961,256 - -0.3
961,317 + -0.3
961,318 - +1.3
961,383 - +0.6
961,416 - -0.5
961,454 + -0.2
961,509 + ABZR87_RS20385 0.11 -0.5
961,509 + ABZR87_RS20385 0.11 -0.1
961,509 + ABZR87_RS20385 0.11 +0.6
961,598 + ABZR87_RS20385 0.22 +0.1
961,598 + ABZR87_RS20385 0.22 +0.9
961,599 - ABZR87_RS20385 0.22 -0.5
961,599 - ABZR87_RS20385 0.22 -1.8
961,599 - ABZR87_RS20385 0.22 -0.2
961,599 - ABZR87_RS20385 0.22 +0.4
961,772 + ABZR87_RS20385 0.43 +1.0
961,772 + ABZR87_RS20385 0.43 +0.7
961,773 - ABZR87_RS20385 0.43 +3.1
961,838 + ABZR87_RS20385 0.50 -0.2
961,839 - ABZR87_RS20385 0.51 +0.8
961,851 + ABZR87_RS20385 0.52 -0.2
961,852 - ABZR87_RS20385 0.52 +0.5
962,396 + ABZR87_RS20390 0.12 +0.3
962,396 + ABZR87_RS20390 0.12 -0.6
962,396 + ABZR87_RS20390 0.12 -1.4
962,396 + ABZR87_RS20390 0.12 -0.2
962,397 - ABZR87_RS20390 0.12 +1.8
962,399 + ABZR87_RS20390 0.12 +2.3
962,771 + ABZR87_RS20390 0.47 +0.7
962,771 + ABZR87_RS20390 0.47 -0.2
962,807 - ABZR87_RS20390 0.50 -0.0
962,828 + ABZR87_RS20390 0.52 +1.2
962,829 - ABZR87_RS20390 0.52 -0.3
962,888 + ABZR87_RS20390 0.57 +0.0
962,889 - ABZR87_RS20390 0.57 +0.4
962,889 - ABZR87_RS20390 0.57 -1.0
962,889 - ABZR87_RS20390 0.57 +0.4
962,889 - ABZR87_RS20390 0.57 +0.0
962,951 + ABZR87_RS20390 0.63 -1.4
962,952 - ABZR87_RS20390 0.63 -0.2
963,165 - ABZR87_RS20390 0.83 -1.2
963,165 - ABZR87_RS20390 0.83 +0.4

Or see this region's nucleotide sequence