Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19775 and ABZR87_RS19780 are separated by 140 nucleotides ABZR87_RS19780 and ABZR87_RS19785 are separated by 11 nucleotides ABZR87_RS19785 and ABZR87_RS19790 are separated by 110 nucleotides ABZR87_RS19790 and ABZR87_RS19795 are separated by 165 nucleotides
ABZR87_RS19775: ABZR87_RS19775 - DMT family transporter, at 809,345 to 810,247
_RS19775
ABZR87_RS19780: ABZR87_RS19780 - Lrp/AsnC family transcriptional regulator, at 810,388 to 810,834
_RS19780
ABZR87_RS19785: ABZR87_RS19785 - cystathionine beta-lyase, at 810,846 to 812,024
_RS19785
ABZR87_RS19790: ABZR87_RS19790 - Lrp/AsnC family transcriptional regulator, at 812,135 to 812,611
_RS19790
ABZR87_RS19795: ABZR87_RS19795 - gamma-glutamyltransferase, at 812,777 to 814,486
_RS19795
Position (kb) 810
811
812
813 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 809.953 kb on - strand, within ABZR87_RS19775 at 809.953 kb on - strand, within ABZR87_RS19775 at 809.988 kb on + strand, within ABZR87_RS19775 at 810.098 kb on + strand, within ABZR87_RS19775 at 810.098 kb on + strand, within ABZR87_RS19775 at 810.098 kb on + strand, within ABZR87_RS19775 at 810.099 kb on - strand, within ABZR87_RS19775 at 810.199 kb on + strand at 810.199 kb on + strand at 810.199 kb on + strand at 810.199 kb on + strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.238 kb on + strand at 810.239 kb on - strand at 810.332 kb on + strand at 810.333 kb on - strand at 810.333 kb on - strand at 810.538 kb on + strand, within ABZR87_RS19780 at 810.538 kb on + strand, within ABZR87_RS19780 at 810.538 kb on + strand, within ABZR87_RS19780 at 810.539 kb on - strand, within ABZR87_RS19780 at 810.539 kb on - strand, within ABZR87_RS19780 at 810.539 kb on - strand, within ABZR87_RS19780 at 810.539 kb on - strand, within ABZR87_RS19780 at 810.571 kb on + strand, within ABZR87_RS19780 at 810.572 kb on - strand, within ABZR87_RS19780 at 810.622 kb on - strand, within ABZR87_RS19780 at 810.622 kb on - strand, within ABZR87_RS19780 at 810.622 kb on - strand, within ABZR87_RS19780 at 810.706 kb on + strand, within ABZR87_RS19780 at 810.706 kb on + strand, within ABZR87_RS19780 at 810.706 kb on + strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.754 kb on + strand, within ABZR87_RS19780 at 810.754 kb on + strand, within ABZR87_RS19780 at 810.771 kb on + strand, within ABZR87_RS19780 at 810.847 kb on + strand at 810.962 kb on - strand at 810.962 kb on - strand at 810.962 kb on - strand at 810.992 kb on - strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.099 kb on - strand, within ABZR87_RS19785 at 811.099 kb on - strand, within ABZR87_RS19785 at 811.099 kb on - strand, within ABZR87_RS19785 at 811.411 kb on + strand, within ABZR87_RS19785 at 811.411 kb on + strand, within ABZR87_RS19785 at 811.412 kb on - strand, within ABZR87_RS19785 at 811.412 kb on - strand, within ABZR87_RS19785 at 811.412 kb on - strand, within ABZR87_RS19785 at 811.465 kb on + strand, within ABZR87_RS19785 at 811.465 kb on + strand, within ABZR87_RS19785 at 811.466 kb on - strand, within ABZR87_RS19785 at 811.466 kb on - strand, within ABZR87_RS19785 at 811.466 kb on - strand, within ABZR87_RS19785 at 811.480 kb on + strand, within ABZR87_RS19785 at 811.481 kb on - strand, within ABZR87_RS19785 at 811.481 kb on - strand, within ABZR87_RS19785 at 811.481 kb on - strand, within ABZR87_RS19785 at 811.481 kb on - strand, within ABZR87_RS19785 at 811.481 kb on - strand, within ABZR87_RS19785 at 811.481 kb on - strand, within ABZR87_RS19785 at 811.595 kb on + strand, within ABZR87_RS19785 at 811.596 kb on - strand, within ABZR87_RS19785 at 811.643 kb on - strand, within ABZR87_RS19785 at 811.756 kb on + strand, within ABZR87_RS19785 at 811.756 kb on - strand, within ABZR87_RS19785 at 811.793 kb on + strand, within ABZR87_RS19785 at 811.794 kb on - strand, within ABZR87_RS19785 at 811.861 kb on + strand, within ABZR87_RS19785 at 811.861 kb on + strand, within ABZR87_RS19785 at 811.861 kb on + strand, within ABZR87_RS19785 at 811.870 kb on + strand, within ABZR87_RS19785 at 811.870 kb on + strand, within ABZR87_RS19785 at 811.870 kb on + strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.876 kb on + strand, within ABZR87_RS19785 at 811.877 kb on - strand, within ABZR87_RS19785 at 811.877 kb on - strand, within ABZR87_RS19785 at 812.062 kb on - strand at 812.204 kb on + strand, within ABZR87_RS19790 at 812.204 kb on + strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.244 kb on + strand, within ABZR87_RS19790 at 812.244 kb on + strand, within ABZR87_RS19790 at 812.245 kb on - strand, within ABZR87_RS19790 at 812.245 kb on - strand, within ABZR87_RS19790 at 812.245 kb on - strand, within ABZR87_RS19790 at 812.383 kb on + strand, within ABZR87_RS19790 at 812.441 kb on + strand, within ABZR87_RS19790 at 812.441 kb on + strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.445 kb on - strand, within ABZR87_RS19790 at 812.445 kb on - strand, within ABZR87_RS19790 at 812.501 kb on + strand, within ABZR87_RS19790 at 812.502 kb on - strand, within ABZR87_RS19790 at 812.502 kb on - strand, within ABZR87_RS19790 at 812.502 kb on - strand, within ABZR87_RS19790 at 812.649 kb on + strand at 812.663 kb on + strand at 812.663 kb on + strand at 812.663 kb on + strand at 812.663 kb on + strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.665 kb on + strand at 812.665 kb on + strand at 812.665 kb on + strand at 812.665 kb on + strand at 812.666 kb on - strand at 812.711 kb on + strand at 812.712 kb on - strand at 812.740 kb on + strand at 812.741 kb on - strand at 812.741 kb on - strand at 812.741 kb on - strand at 812.755 kb on + strand at 812.755 kb on + strand at 812.756 kb on - strand at 812.961 kb on - strand, within ABZR87_RS19795 at 812.961 kb on - strand, within ABZR87_RS19795 at 812.978 kb on + strand, within ABZR87_RS19795 at 812.979 kb on - strand, within ABZR87_RS19795
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 809,953 - ABZR87_RS19775 0.67 +0.4 809,953 - ABZR87_RS19775 0.67 -0.3 809,988 + ABZR87_RS19775 0.71 -0.2 810,098 + ABZR87_RS19775 0.83 -1.1 810,098 + ABZR87_RS19775 0.83 -1.2 810,098 + ABZR87_RS19775 0.83 -0.6 810,099 - ABZR87_RS19775 0.83 +0.7 810,199 + -0.1 810,199 + +0.4 810,199 + +0.3 810,199 + +1.0 810,200 - +0.4 810,200 - -1.2 810,200 - -0.3 810,200 - -0.1 810,200 - -0.1 810,200 - -0.3 810,200 - +0.1 810,238 + +0.8 810,239 - -2.2 810,332 + +1.4 810,333 - -0.0 810,333 - +0.1 810,538 + ABZR87_RS19780 0.34 -1.6 810,538 + ABZR87_RS19780 0.34 +0.3 810,538 + ABZR87_RS19780 0.34 +1.2 810,539 - ABZR87_RS19780 0.34 -1.0 810,539 - ABZR87_RS19780 0.34 -1.8 810,539 - ABZR87_RS19780 0.34 +0.2 810,539 - ABZR87_RS19780 0.34 -1.4 810,571 + ABZR87_RS19780 0.41 +1.1 810,572 - ABZR87_RS19780 0.41 -1.4 810,622 - ABZR87_RS19780 0.52 +0.5 810,622 - ABZR87_RS19780 0.52 +0.4 810,622 - ABZR87_RS19780 0.52 +0.7 810,706 + ABZR87_RS19780 0.71 -0.5 810,706 + ABZR87_RS19780 0.71 +0.1 810,706 + ABZR87_RS19780 0.71 +0.3 810,707 - ABZR87_RS19780 0.71 -0.2 810,707 - ABZR87_RS19780 0.71 -0.2 810,707 - ABZR87_RS19780 0.71 -0.4 810,707 - ABZR87_RS19780 0.71 -0.8 810,707 - ABZR87_RS19780 0.71 +1.7 810,707 - ABZR87_RS19780 0.71 -0.4 810,754 + ABZR87_RS19780 0.82 +0.5 810,754 + ABZR87_RS19780 0.82 +0.4 810,771 + ABZR87_RS19780 0.86 +2.6 810,847 + -1.8 810,962 - -0.5 810,962 - -1.5 810,962 - +1.2 810,992 - ABZR87_RS19785 0.12 +0.6 811,098 + ABZR87_RS19785 0.21 -2.7 811,098 + ABZR87_RS19785 0.21 -0.5 811,098 + ABZR87_RS19785 0.21 +0.9 811,098 + ABZR87_RS19785 0.21 +0.7 811,098 + ABZR87_RS19785 0.21 +0.1 811,099 - ABZR87_RS19785 0.21 +0.4 811,099 - ABZR87_RS19785 0.21 -0.4 811,099 - ABZR87_RS19785 0.21 -0.5 811,411 + ABZR87_RS19785 0.48 -2.0 811,411 + ABZR87_RS19785 0.48 +0.5 811,412 - ABZR87_RS19785 0.48 +1.0 811,412 - ABZR87_RS19785 0.48 -1.2 811,412 - ABZR87_RS19785 0.48 +1.5 811,465 + ABZR87_RS19785 0.53 +0.0 811,465 + ABZR87_RS19785 0.53 +1.5 811,466 - ABZR87_RS19785 0.53 -0.2 811,466 - ABZR87_RS19785 0.53 +0.0 811,466 - ABZR87_RS19785 0.53 +0.8 811,480 + ABZR87_RS19785 0.54 -0.3 811,481 - ABZR87_RS19785 0.54 +1.8 811,481 - ABZR87_RS19785 0.54 +0.2 811,481 - ABZR87_RS19785 0.54 -1.6 811,481 - ABZR87_RS19785 0.54 -0.4 811,481 - ABZR87_RS19785 0.54 +0.8 811,481 - ABZR87_RS19785 0.54 +0.8 811,595 + ABZR87_RS19785 0.64 -0.4 811,596 - ABZR87_RS19785 0.64 -1.2 811,643 - ABZR87_RS19785 0.68 +0.1 811,756 + ABZR87_RS19785 0.77 +0.4 811,756 - ABZR87_RS19785 0.77 +2.1 811,793 + ABZR87_RS19785 0.80 -0.5 811,794 - ABZR87_RS19785 0.80 +0.5 811,861 + ABZR87_RS19785 0.86 -0.0 811,861 + ABZR87_RS19785 0.86 +0.5 811,861 + ABZR87_RS19785 0.86 -0.4 811,870 + ABZR87_RS19785 0.87 +0.9 811,870 + ABZR87_RS19785 0.87 +1.0 811,870 + ABZR87_RS19785 0.87 -1.4 811,871 - ABZR87_RS19785 0.87 -0.2 811,871 - ABZR87_RS19785 0.87 -0.8 811,871 - ABZR87_RS19785 0.87 -1.0 811,871 - ABZR87_RS19785 0.87 -0.2 811,871 - ABZR87_RS19785 0.87 +1.1 811,874 + ABZR87_RS19785 0.87 -0.1 811,874 + ABZR87_RS19785 0.87 +0.7 811,874 + ABZR87_RS19785 0.87 +0.2 811,874 + ABZR87_RS19785 0.87 +3.5 811,874 + ABZR87_RS19785 0.87 -0.6 811,875 - ABZR87_RS19785 0.87 +1.0 811,875 - ABZR87_RS19785 0.87 +0.7 811,875 - ABZR87_RS19785 0.87 +0.5 811,875 - ABZR87_RS19785 0.87 +0.4 811,875 - ABZR87_RS19785 0.87 +0.1 811,875 - ABZR87_RS19785 0.87 -0.2 811,876 + ABZR87_RS19785 0.87 +0.2 811,877 - ABZR87_RS19785 0.87 -0.1 811,877 - ABZR87_RS19785 0.87 +0.7 812,062 - -0.1 812,204 + ABZR87_RS19790 0.14 -0.8 812,204 + ABZR87_RS19790 0.14 -0.4 812,205 - ABZR87_RS19790 0.15 -0.1 812,205 - ABZR87_RS19790 0.15 -0.2 812,205 - ABZR87_RS19790 0.15 -0.8 812,205 - ABZR87_RS19790 0.15 +1.2 812,244 + ABZR87_RS19790 0.23 +0.5 812,244 + ABZR87_RS19790 0.23 -0.3 812,245 - ABZR87_RS19790 0.23 +0.3 812,245 - ABZR87_RS19790 0.23 +0.9 812,245 - ABZR87_RS19790 0.23 +0.1 812,383 + ABZR87_RS19790 0.52 +0.7 812,441 + ABZR87_RS19790 0.64 +1.4 812,441 + ABZR87_RS19790 0.64 +1.1 812,442 - ABZR87_RS19790 0.64 -1.8 812,442 - ABZR87_RS19790 0.64 +1.7 812,442 - ABZR87_RS19790 0.64 -0.5 812,442 - ABZR87_RS19790 0.64 -0.9 812,444 + ABZR87_RS19790 0.65 -1.0 812,444 + ABZR87_RS19790 0.65 -0.2 812,444 + ABZR87_RS19790 0.65 +2.7 812,444 + ABZR87_RS19790 0.65 -1.1 812,445 - ABZR87_RS19790 0.65 +3.3 812,445 - ABZR87_RS19790 0.65 -0.0 812,501 + ABZR87_RS19790 0.77 -0.5 812,502 - ABZR87_RS19790 0.77 +1.9 812,502 - ABZR87_RS19790 0.77 -0.6 812,502 - ABZR87_RS19790 0.77 -1.3 812,649 + -0.1 812,663 + -1.0 812,663 + -0.4 812,663 + -0.3 812,663 + -0.0 812,664 - -0.5 812,664 - -0.9 812,664 - -0.8 812,664 - -0.3 812,664 - +1.8 812,664 - -1.1 812,664 - -1.0 812,664 - +0.1 812,665 + +0.0 812,665 + -2.6 812,665 + -0.7 812,665 + -0.3 812,666 - +0.3 812,711 + -0.0 812,712 - +0.2 812,740 + +0.2 812,741 - -0.6 812,741 - +1.4 812,741 - -0.1 812,755 + +0.1 812,755 + -0.5 812,756 - -0.2 812,961 - ABZR87_RS19795 0.11 -0.3 812,961 - ABZR87_RS19795 0.11 +2.2 812,978 + ABZR87_RS19795 0.12 -0.1 812,979 - ABZR87_RS19795 0.12 -0.3
Or see this region's nucleotide sequence