Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19700 and ABZR87_RS19705 are separated by 342 nucleotides ABZR87_RS19705 and ABZR87_RS19710 overlap by 18 nucleotides ABZR87_RS19710 and ABZR87_RS19715 are separated by 153 nucleotides
ABZR87_RS19700: ABZR87_RS19700 - OFA family MFS transporter, at 794,531 to 796,186
_RS19700
ABZR87_RS19705: ABZR87_RS19705 - APC family permease, at 796,529 to 797,911
_RS19705
ABZR87_RS19710: ABZR87_RS19710 - Hpt domain-containing protein, at 797,894 to 798,307
_RS19710
ABZR87_RS19715: ABZR87_RS19715 - CusA/CzcA family heavy metal efflux RND transporter, at 798,461 to 801,556
_RS19715
Position (kb) 796
797
798 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 795.529 kb on - strand, within ABZR87_RS19700 at 795.529 kb on - strand, within ABZR87_RS19700 at 795.529 kb on - strand, within ABZR87_RS19700 at 795.529 kb on - strand, within ABZR87_RS19700 at 795.529 kb on - strand, within ABZR87_RS19700 at 795.547 kb on + strand, within ABZR87_RS19700 at 795.547 kb on + strand, within ABZR87_RS19700 at 795.718 kb on - strand, within ABZR87_RS19700 at 795.718 kb on - strand, within ABZR87_RS19700 at 795.922 kb on + strand, within ABZR87_RS19700 at 795.923 kb on - strand, within ABZR87_RS19700 at 796.065 kb on + strand at 796.065 kb on + strand at 796.066 kb on - strand at 796.202 kb on - strand at 796.202 kb on - strand at 796.313 kb on + strand at 796.314 kb on - strand at 796.314 kb on - strand at 796.339 kb on + strand at 796.340 kb on - strand at 796.345 kb on + strand at 796.346 kb on - strand at 796.358 kb on + strand at 796.358 kb on + strand at 796.358 kb on + strand at 796.393 kb on - strand at 796.397 kb on + strand at 796.467 kb on + strand at 796.468 kb on - strand at 796.663 kb on + strand at 796.664 kb on - strand at 796.682 kb on + strand, within ABZR87_RS19705 at 796.683 kb on - strand, within ABZR87_RS19705 at 796.718 kb on + strand, within ABZR87_RS19705 at 796.719 kb on - strand, within ABZR87_RS19705 at 796.719 kb on - strand, within ABZR87_RS19705 at 796.760 kb on + strand, within ABZR87_RS19705 at 796.991 kb on + strand, within ABZR87_RS19705 at 796.992 kb on - strand, within ABZR87_RS19705 at 796.992 kb on - strand, within ABZR87_RS19705 at 797.119 kb on + strand, within ABZR87_RS19705 at 797.119 kb on + strand, within ABZR87_RS19705 at 797.119 kb on + strand, within ABZR87_RS19705 at 797.120 kb on - strand, within ABZR87_RS19705 at 797.242 kb on - strand, within ABZR87_RS19705 at 797.384 kb on + strand, within ABZR87_RS19705 at 797.384 kb on + strand, within ABZR87_RS19705 at 797.385 kb on - strand, within ABZR87_RS19705 at 797.385 kb on - strand, within ABZR87_RS19705 at 797.385 kb on - strand, within ABZR87_RS19705 at 797.462 kb on + strand, within ABZR87_RS19705 at 797.462 kb on + strand, within ABZR87_RS19705 at 797.463 kb on + strand, within ABZR87_RS19705 at 797.463 kb on - strand, within ABZR87_RS19705 at 797.498 kb on + strand, within ABZR87_RS19705 at 797.498 kb on + strand, within ABZR87_RS19705 at 797.654 kb on + strand, within ABZR87_RS19705 at 797.654 kb on + strand, within ABZR87_RS19705 at 797.654 kb on + strand, within ABZR87_RS19705 at 797.654 kb on + strand, within ABZR87_RS19705 at 797.655 kb on - strand, within ABZR87_RS19705 at 797.655 kb on - strand, within ABZR87_RS19705 at 797.715 kb on + strand, within ABZR87_RS19705 at 797.783 kb on + strand at 797.783 kb on + strand at 798.274 kb on + strand at 798.765 kb on + strand at 798.765 kb on + strand at 798.765 kb on + strand at 798.766 kb on - strand at 798.766 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 795,529 - ABZR87_RS19700 0.60 -0.1 795,529 - ABZR87_RS19700 0.60 +1.8 795,529 - ABZR87_RS19700 0.60 -0.5 795,529 - ABZR87_RS19700 0.60 -2.3 795,529 - ABZR87_RS19700 0.60 -1.1 795,547 + ABZR87_RS19700 0.61 +0.1 795,547 + ABZR87_RS19700 0.61 +2.7 795,718 - ABZR87_RS19700 0.72 -0.8 795,718 - ABZR87_RS19700 0.72 +0.4 795,922 + ABZR87_RS19700 0.84 -0.3 795,923 - ABZR87_RS19700 0.84 -0.1 796,065 + -0.7 796,065 + -0.1 796,066 - -0.5 796,202 - -1.7 796,202 - -0.8 796,313 + +1.1 796,314 - +0.7 796,314 - -1.0 796,339 + +0.1 796,340 - +0.9 796,345 + +0.9 796,346 - +0.4 796,358 + -0.6 796,358 + -0.3 796,358 + -0.8 796,393 - +0.4 796,397 + +2.2 796,467 + -0.1 796,468 - -2.4 796,663 + +2.1 796,664 - -1.2 796,682 + ABZR87_RS19705 0.11 +0.1 796,683 - ABZR87_RS19705 0.11 +1.2 796,718 + ABZR87_RS19705 0.14 +0.7 796,719 - ABZR87_RS19705 0.14 +1.9 796,719 - ABZR87_RS19705 0.14 -1.2 796,760 + ABZR87_RS19705 0.17 -1.7 796,991 + ABZR87_RS19705 0.33 -0.3 796,992 - ABZR87_RS19705 0.33 -0.0 796,992 - ABZR87_RS19705 0.33 +0.8 797,119 + ABZR87_RS19705 0.43 -0.1 797,119 + ABZR87_RS19705 0.43 +0.9 797,119 + ABZR87_RS19705 0.43 -1.8 797,120 - ABZR87_RS19705 0.43 +1.7 797,242 - ABZR87_RS19705 0.52 +2.5 797,384 + ABZR87_RS19705 0.62 +0.1 797,384 + ABZR87_RS19705 0.62 +1.1 797,385 - ABZR87_RS19705 0.62 -0.9 797,385 - ABZR87_RS19705 0.62 +0.9 797,385 - ABZR87_RS19705 0.62 +1.2 797,462 + ABZR87_RS19705 0.67 +1.1 797,462 + ABZR87_RS19705 0.67 +0.1 797,463 + ABZR87_RS19705 0.68 +1.2 797,463 - ABZR87_RS19705 0.68 +0.2 797,498 + ABZR87_RS19705 0.70 -0.5 797,498 + ABZR87_RS19705 0.70 -0.3 797,654 + ABZR87_RS19705 0.81 -0.1 797,654 + ABZR87_RS19705 0.81 -0.8 797,654 + ABZR87_RS19705 0.81 +0.7 797,654 + ABZR87_RS19705 0.81 -0.4 797,655 - ABZR87_RS19705 0.81 +0.6 797,655 - ABZR87_RS19705 0.81 +1.7 797,715 + ABZR87_RS19705 0.86 +0.9 797,783 + -1.2 797,783 + -0.2 798,274 + -0.6 798,765 + +0.5 798,765 + -0.1 798,765 + +2.9 798,766 - -0.8 798,766 - -0.3
Or see this region's nucleotide sequence