Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18455

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18450 and ABZR87_RS18455 overlap by 8 nucleotidesABZR87_RS18455 and ABZR87_RS18460 are separated by 23 nucleotidesABZR87_RS18460 and ABZR87_RS18465 are separated by 12 nucleotides ABZR87_RS18450: ABZR87_RS18450 - CoA transferase, at 499,425 to 500,651 _RS18450 ABZR87_RS18455: ABZR87_RS18455 - shikimate dehydrogenase, at 500,644 to 501,477 _RS18455 ABZR87_RS18460: ABZR87_RS18460 - type II 3-dehydroquinate dehydratase, at 501,501 to 501,944 _RS18460 ABZR87_RS18465: ABZR87_RS18465 - YdeI/OmpD-associated family protein, at 501,957 to 502,526 _RS18465 Position (kb) 500 501 502Strain fitness (log2 ratio) -2 -1 0 1 2at 499.716 kb on + strand, within ABZR87_RS18450at 499.717 kb on - strand, within ABZR87_RS18450at 499.753 kb on - strand, within ABZR87_RS18450at 499.789 kb on - strand, within ABZR87_RS18450at 499.789 kb on - strand, within ABZR87_RS18450at 499.938 kb on + strand, within ABZR87_RS18450at 499.938 kb on + strand, within ABZR87_RS18450at 499.938 kb on + strand, within ABZR87_RS18450at 499.938 kb on + strand, within ABZR87_RS18450at 499.939 kb on - strand, within ABZR87_RS18450at 500.029 kb on - strand, within ABZR87_RS18450at 500.029 kb on - strand, within ABZR87_RS18450at 500.055 kb on + strand, within ABZR87_RS18450at 500.056 kb on - strand, within ABZR87_RS18450at 500.056 kb on - strand, within ABZR87_RS18450at 500.070 kb on + strand, within ABZR87_RS18450at 500.070 kb on + strand, within ABZR87_RS18450at 500.070 kb on + strand, within ABZR87_RS18450at 500.071 kb on - strand, within ABZR87_RS18450at 500.130 kb on + strand, within ABZR87_RS18450at 500.131 kb on - strand, within ABZR87_RS18450at 500.626 kb on - strandat 500.626 kb on - strandat 500.657 kb on - strandat 500.743 kb on + strand, within ABZR87_RS18455at 500.743 kb on + strand, within ABZR87_RS18455at 500.743 kb on + strand, within ABZR87_RS18455at 500.744 kb on - strand, within ABZR87_RS18455at 500.744 kb on - strand, within ABZR87_RS18455at 501.175 kb on + strand, within ABZR87_RS18455at 501.293 kb on - strand, within ABZR87_RS18455at 501.293 kb on - strand, within ABZR87_RS18455at 501.304 kb on + strand, within ABZR87_RS18455at 501.304 kb on + strand, within ABZR87_RS18455at 501.305 kb on - strand, within ABZR87_RS18455at 501.745 kb on - strand, within ABZR87_RS18460at 501.745 kb on - strand, within ABZR87_RS18460at 501.745 kb on - strand, within ABZR87_RS18460at 501.750 kb on + strand, within ABZR87_RS18460at 501.750 kb on + strand, within ABZR87_RS18460at 501.751 kb on - strand, within ABZR87_RS18460at 501.751 kb on - strand, within ABZR87_RS18460at 501.803 kb on + strand, within ABZR87_RS18460at 501.803 kb on + strand, within ABZR87_RS18460at 501.803 kb on + strand, within ABZR87_RS18460at 501.803 kb on + strand, within ABZR87_RS18460at 501.803 kb on + strand, within ABZR87_RS18460at 501.803 kb on + strand, within ABZR87_RS18460at 501.803 kb on + strand, within ABZR87_RS18460at 501.804 kb on - strand, within ABZR87_RS18460at 501.804 kb on - strand, within ABZR87_RS18460at 501.804 kb on - strand, within ABZR87_RS18460at 501.804 kb on - strand, within ABZR87_RS18460at 501.804 kb on - strand, within ABZR87_RS18460at 501.804 kb on - strand, within ABZR87_RS18460at 501.804 kb on - strand, within ABZR87_RS18460at 501.847 kb on + strand, within ABZR87_RS18460at 501.847 kb on + strand, within ABZR87_RS18460at 501.847 kb on + strand, within ABZR87_RS18460at 501.848 kb on - strand, within ABZR87_RS18460at 501.897 kb on + strand, within ABZR87_RS18460at 501.898 kb on - strand, within ABZR87_RS18460at 501.943 kb on - strandat 502.080 kb on + strand, within ABZR87_RS18465at 502.080 kb on + strand, within ABZR87_RS18465at 502.168 kb on + strand, within ABZR87_RS18465at 502.169 kb on - strand, within ABZR87_RS18465at 502.324 kb on + strand, within ABZR87_RS18465at 502.324 kb on + strand, within ABZR87_RS18465at 502.325 kb on - strand, within ABZR87_RS18465at 502.366 kb on + strand, within ABZR87_RS18465at 502.367 kb on - strand, within ABZR87_RS18465at 502.396 kb on + strand, within ABZR87_RS18465at 502.397 kb on - strand, within ABZR87_RS18465at 502.397 kb on - strand, within ABZR87_RS18465

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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499,716 + ABZR87_RS18450 0.24 -0.9
499,717 - ABZR87_RS18450 0.24 +0.4
499,753 - ABZR87_RS18450 0.27 +1.5
499,789 - ABZR87_RS18450 0.30 -0.3
499,789 - ABZR87_RS18450 0.30 +0.3
499,938 + ABZR87_RS18450 0.42 -1.1
499,938 + ABZR87_RS18450 0.42 +0.1
499,938 + ABZR87_RS18450 0.42 +0.2
499,938 + ABZR87_RS18450 0.42 -0.8
499,939 - ABZR87_RS18450 0.42 -1.5
500,029 - ABZR87_RS18450 0.49 -1.1
500,029 - ABZR87_RS18450 0.49 -0.4
500,055 + ABZR87_RS18450 0.51 +1.7
500,056 - ABZR87_RS18450 0.51 +0.8
500,056 - ABZR87_RS18450 0.51 +1.0
500,070 + ABZR87_RS18450 0.53 +0.5
500,070 + ABZR87_RS18450 0.53 +0.1
500,070 + ABZR87_RS18450 0.53 -0.5
500,071 - ABZR87_RS18450 0.53 -1.8
500,130 + ABZR87_RS18450 0.57 +0.1
500,131 - ABZR87_RS18450 0.58 +1.1
500,626 - -1.2
500,626 - -2.3
500,657 - -1.0
500,743 + ABZR87_RS18455 0.12 -0.0
500,743 + ABZR87_RS18455 0.12 +0.0
500,743 + ABZR87_RS18455 0.12 -1.3
500,744 - ABZR87_RS18455 0.12 +0.6
500,744 - ABZR87_RS18455 0.12 -0.4
501,175 + ABZR87_RS18455 0.64 +0.8
501,293 - ABZR87_RS18455 0.78 -0.4
501,293 - ABZR87_RS18455 0.78 -0.7
501,304 + ABZR87_RS18455 0.79 -1.0
501,304 + ABZR87_RS18455 0.79 +0.4
501,305 - ABZR87_RS18455 0.79 -2.5
501,745 - ABZR87_RS18460 0.55 +1.5
501,745 - ABZR87_RS18460 0.55 +1.3
501,745 - ABZR87_RS18460 0.55 -1.3
501,750 + ABZR87_RS18460 0.56 -0.6
501,750 + ABZR87_RS18460 0.56 +0.7
501,751 - ABZR87_RS18460 0.56 -0.7
501,751 - ABZR87_RS18460 0.56 -1.2
501,803 + ABZR87_RS18460 0.68 +0.1
501,803 + ABZR87_RS18460 0.68 -2.2
501,803 + ABZR87_RS18460 0.68 -1.1
501,803 + ABZR87_RS18460 0.68 +0.3
501,803 + ABZR87_RS18460 0.68 -0.2
501,803 + ABZR87_RS18460 0.68 -1.3
501,803 + ABZR87_RS18460 0.68 +1.0
501,804 - ABZR87_RS18460 0.68 +0.1
501,804 - ABZR87_RS18460 0.68 -0.8
501,804 - ABZR87_RS18460 0.68 -0.5
501,804 - ABZR87_RS18460 0.68 -2.1
501,804 - ABZR87_RS18460 0.68 -0.5
501,804 - ABZR87_RS18460 0.68 -0.4
501,804 - ABZR87_RS18460 0.68 -0.6
501,847 + ABZR87_RS18460 0.78 -0.2
501,847 + ABZR87_RS18460 0.78 -0.6
501,847 + ABZR87_RS18460 0.78 +0.3
501,848 - ABZR87_RS18460 0.78 +2.7
501,897 + ABZR87_RS18460 0.89 -0.2
501,898 - ABZR87_RS18460 0.89 -2.5
501,943 - -0.1
502,080 + ABZR87_RS18465 0.22 -0.0
502,080 + ABZR87_RS18465 0.22 -1.8
502,168 + ABZR87_RS18465 0.37 -0.1
502,169 - ABZR87_RS18465 0.37 -1.4
502,324 + ABZR87_RS18465 0.64 -0.4
502,324 + ABZR87_RS18465 0.64 -0.4
502,325 - ABZR87_RS18465 0.65 -1.8
502,366 + ABZR87_RS18465 0.72 -0.9
502,367 - ABZR87_RS18465 0.72 +0.2
502,396 + ABZR87_RS18465 0.77 -0.6
502,397 - ABZR87_RS18465 0.77 +0.3
502,397 - ABZR87_RS18465 0.77 +0.2

Or see this region's nucleotide sequence