Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18205

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18200 and ABZR87_RS18205 are separated by 347 nucleotidesABZR87_RS18205 and ABZR87_RS18210 are separated by 27 nucleotides ABZR87_RS18200: ABZR87_RS18200 - hypothetical protein, at 452,694 to 453,761 _RS18200 ABZR87_RS18205: ABZR87_RS18205 - nucleobase:cation symporter-2 family protein, at 454,109 to 455,536 _RS18205 ABZR87_RS18210: ABZR87_RS18210 - aldose epimerase family protein, at 455,564 to 456,646 _RS18210 Position (kb) 454 455 456Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 453.178 kb on + strand, within ABZR87_RS18200at 453.178 kb on + strand, within ABZR87_RS18200at 453.179 kb on - strand, within ABZR87_RS18200at 453.244 kb on + strand, within ABZR87_RS18200at 453.244 kb on + strand, within ABZR87_RS18200at 453.244 kb on + strand, within ABZR87_RS18200at 453.244 kb on + strand, within ABZR87_RS18200at 453.244 kb on + strand, within ABZR87_RS18200at 453.244 kb on + strand, within ABZR87_RS18200at 453.245 kb on - strand, within ABZR87_RS18200at 453.268 kb on + strand, within ABZR87_RS18200at 453.269 kb on - strand, within ABZR87_RS18200at 453.373 kb on + strand, within ABZR87_RS18200at 453.373 kb on + strand, within ABZR87_RS18200at 453.374 kb on - strand, within ABZR87_RS18200at 453.374 kb on - strand, within ABZR87_RS18200at 453.374 kb on - strand, within ABZR87_RS18200at 453.699 kb on - strandat 453.781 kb on + strandat 453.781 kb on + strandat 453.781 kb on + strandat 453.781 kb on + strandat 453.796 kb on + strandat 453.797 kb on - strandat 453.924 kb on - strandat 454.238 kb on + strandat 454.238 kb on + strandat 454.238 kb on + strandat 454.238 kb on + strandat 454.238 kb on + strandat 454.238 kb on + strandat 454.239 kb on - strandat 454.239 kb on - strandat 454.239 kb on - strandat 454.239 kb on - strandat 454.239 kb on - strandat 454.239 kb on - strandat 454.239 kb on - strandat 454.239 kb on - strandat 454.239 kb on - strandat 454.239 kb on - strandat 454.239 kb on - strandat 454.239 kb on - strandat 454.239 kb on - strandat 454.239 kb on - strandat 454.307 kb on + strand, within ABZR87_RS18205at 454.307 kb on + strand, within ABZR87_RS18205at 454.307 kb on + strand, within ABZR87_RS18205at 454.889 kb on + strand, within ABZR87_RS18205at 454.889 kb on + strand, within ABZR87_RS18205at 454.890 kb on - strand, within ABZR87_RS18205at 454.890 kb on - strand, within ABZR87_RS18205at 455.092 kb on + strand, within ABZR87_RS18205at 455.093 kb on - strand, within ABZR87_RS18205at 455.147 kb on + strand, within ABZR87_RS18205at 455.147 kb on + strand, within ABZR87_RS18205at 455.147 kb on + strand, within ABZR87_RS18205at 455.147 kb on + strand, within ABZR87_RS18205at 455.148 kb on - strand, within ABZR87_RS18205at 455.207 kb on + strand, within ABZR87_RS18205at 455.207 kb on + strand, within ABZR87_RS18205at 455.208 kb on - strand, within ABZR87_RS18205at 455.231 kb on + strand, within ABZR87_RS18205at 455.232 kb on - strand, within ABZR87_RS18205at 455.232 kb on - strand, within ABZR87_RS18205at 455.232 kb on - strand, within ABZR87_RS18205at 455.593 kb on - strandat 455.610 kb on + strandat 455.690 kb on + strand, within ABZR87_RS18210at 455.690 kb on + strand, within ABZR87_RS18210at 455.691 kb on - strand, within ABZR87_RS18210at 455.691 kb on - strand, within ABZR87_RS18210at 455.737 kb on - strand, within ABZR87_RS18210at 455.796 kb on + strand, within ABZR87_RS18210at 455.843 kb on - strand, within ABZR87_RS18210at 456.124 kb on - strand, within ABZR87_RS18210at 456.124 kb on - strand, within ABZR87_RS18210at 456.257 kb on + strand, within ABZR87_RS18210at 456.324 kb on + strand, within ABZR87_RS18210at 456.324 kb on + strand, within ABZR87_RS18210at 456.324 kb on + strand, within ABZR87_RS18210at 456.325 kb on - strand, within ABZR87_RS18210at 456.344 kb on - strand, within ABZR87_RS18210at 456.415 kb on - strand, within ABZR87_RS18210

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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453,178 + ABZR87_RS18200 0.45 +0.2
453,178 + ABZR87_RS18200 0.45 -0.1
453,179 - ABZR87_RS18200 0.45 +0.4
453,244 + ABZR87_RS18200 0.51 +0.8
453,244 + ABZR87_RS18200 0.51 -0.9
453,244 + ABZR87_RS18200 0.51 -1.3
453,244 + ABZR87_RS18200 0.51 -0.7
453,244 + ABZR87_RS18200 0.51 +0.0
453,244 + ABZR87_RS18200 0.51 +0.8
453,245 - ABZR87_RS18200 0.52 -2.4
453,268 + ABZR87_RS18200 0.54 -1.0
453,269 - ABZR87_RS18200 0.54 +0.0
453,373 + ABZR87_RS18200 0.64 +0.2
453,373 + ABZR87_RS18200 0.64 +2.3
453,374 - ABZR87_RS18200 0.64 -0.5
453,374 - ABZR87_RS18200 0.64 +0.6
453,374 - ABZR87_RS18200 0.64 -1.4
453,699 - +0.2
453,781 + +1.7
453,781 + -0.0
453,781 + +0.3
453,781 + +0.6
453,796 + -0.4
453,797 - +0.3
453,924 - -0.1
454,238 + +0.6
454,238 + -0.6
454,238 + +0.0
454,238 + -0.4
454,238 + -0.3
454,238 + -2.8
454,239 - -0.2
454,239 - +0.2
454,239 - +0.2
454,239 - +0.7
454,239 - -0.8
454,239 - -1.6
454,239 - +0.1
454,239 - +0.3
454,239 - -0.8
454,239 - +0.4
454,239 - -0.7
454,239 - -0.2
454,239 - +1.1
454,239 - -0.6
454,307 + ABZR87_RS18205 0.14 +0.7
454,307 + ABZR87_RS18205 0.14 -1.4
454,307 + ABZR87_RS18205 0.14 -1.8
454,889 + ABZR87_RS18205 0.55 -0.6
454,889 + ABZR87_RS18205 0.55 +1.2
454,890 - ABZR87_RS18205 0.55 -0.2
454,890 - ABZR87_RS18205 0.55 -0.4
455,092 + ABZR87_RS18205 0.69 +0.1
455,093 - ABZR87_RS18205 0.69 +0.9
455,147 + ABZR87_RS18205 0.73 +1.3
455,147 + ABZR87_RS18205 0.73 -0.1
455,147 + ABZR87_RS18205 0.73 -0.4
455,147 + ABZR87_RS18205 0.73 +1.2
455,148 - ABZR87_RS18205 0.73 +0.7
455,207 + ABZR87_RS18205 0.77 +0.3
455,207 + ABZR87_RS18205 0.77 +0.7
455,208 - ABZR87_RS18205 0.77 -0.3
455,231 + ABZR87_RS18205 0.79 +0.2
455,232 - ABZR87_RS18205 0.79 -0.4
455,232 - ABZR87_RS18205 0.79 -0.1
455,232 - ABZR87_RS18205 0.79 +0.6
455,593 - +0.6
455,610 + -2.3
455,690 + ABZR87_RS18210 0.12 -0.6
455,690 + ABZR87_RS18210 0.12 -0.5
455,691 - ABZR87_RS18210 0.12 +0.7
455,691 - ABZR87_RS18210 0.12 -1.8
455,737 - ABZR87_RS18210 0.16 +0.6
455,796 + ABZR87_RS18210 0.21 -0.4
455,843 - ABZR87_RS18210 0.26 -0.6
456,124 - ABZR87_RS18210 0.52 +0.2
456,124 - ABZR87_RS18210 0.52 -0.2
456,257 + ABZR87_RS18210 0.64 +0.9
456,324 + ABZR87_RS18210 0.70 +0.6
456,324 + ABZR87_RS18210 0.70 +0.2
456,324 + ABZR87_RS18210 0.70 -2.2
456,325 - ABZR87_RS18210 0.70 +2.7
456,344 - ABZR87_RS18210 0.72 -1.5
456,415 - ABZR87_RS18210 0.79 -0.7

Or see this region's nucleotide sequence