Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17665

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17660 and ABZR87_RS17665 are separated by 144 nucleotidesABZR87_RS17665 and ABZR87_RS17670 overlap by 4 nucleotidesABZR87_RS17670 and ABZR87_RS17675 overlap by 4 nucleotides ABZR87_RS17660: ABZR87_RS17660 - efflux RND transporter permease subunit, at 327,128 to 330,250 _RS17660 ABZR87_RS17665: ABZR87_RS17665 - PAS domain-containing protein, at 330,395 to 331,036 _RS17665 ABZR87_RS17670: ABZR87_RS17670 - threo-3-hydroxy-L-aspartate ammonia-lyase, at 331,033 to 332,010 _RS17670 ABZR87_RS17675: ABZR87_RS17675 - RidA family protein, at 332,007 to 332,396 _RS17675 Position (kb) 330 331 332Strain fitness (log2 ratio) -2 -1 0 1 2at 329.449 kb on + strand, within ABZR87_RS17660at 329.821 kb on + strand, within ABZR87_RS17660at 329.822 kb on - strand, within ABZR87_RS17660at 329.822 kb on - strand, within ABZR87_RS17660at 330.091 kb on + strandat 330.091 kb on + strandat 330.091 kb on + strandat 330.091 kb on + strandat 330.092 kb on - strandat 330.092 kb on - strandat 330.092 kb on - strandat 330.092 kb on - strandat 330.092 kb on - strandat 330.152 kb on + strandat 330.152 kb on + strandat 330.152 kb on + strandat 330.152 kb on + strandat 330.153 kb on - strandat 330.153 kb on - strandat 330.153 kb on - strandat 330.153 kb on - strandat 330.153 kb on - strandat 330.248 kb on + strandat 330.248 kb on + strandat 330.249 kb on - strandat 330.256 kb on + strandat 330.274 kb on - strandat 330.274 kb on - strandat 330.701 kb on + strand, within ABZR87_RS17665at 330.713 kb on - strand, within ABZR87_RS17665at 330.713 kb on - strand, within ABZR87_RS17665at 330.732 kb on + strand, within ABZR87_RS17665at 330.732 kb on + strand, within ABZR87_RS17665at 330.732 kb on + strand, within ABZR87_RS17665at 330.732 kb on + strand, within ABZR87_RS17665at 330.733 kb on - strand, within ABZR87_RS17665at 330.733 kb on - strand, within ABZR87_RS17665at 331.007 kb on + strandat 331.007 kb on + strandat 331.007 kb on + strandat 331.008 kb on - strandat 331.008 kb on - strandat 331.008 kb on - strandat 331.008 kb on - strandat 331.013 kb on + strandat 331.013 kb on + strandat 331.013 kb on + strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.051 kb on + strandat 331.207 kb on + strand, within ABZR87_RS17670at 331.207 kb on + strand, within ABZR87_RS17670at 331.207 kb on + strand, within ABZR87_RS17670at 331.207 kb on + strand, within ABZR87_RS17670at 331.208 kb on - strand, within ABZR87_RS17670at 331.208 kb on - strand, within ABZR87_RS17670at 331.409 kb on - strand, within ABZR87_RS17670at 331.409 kb on - strand, within ABZR87_RS17670at 331.461 kb on + strand, within ABZR87_RS17670at 331.461 kb on + strand, within ABZR87_RS17670at 331.462 kb on - strand, within ABZR87_RS17670at 331.477 kb on + strand, within ABZR87_RS17670at 331.477 kb on + strand, within ABZR87_RS17670at 331.478 kb on - strand, within ABZR87_RS17670at 331.553 kb on + strand, within ABZR87_RS17670at 331.553 kb on + strand, within ABZR87_RS17670at 331.553 kb on + strand, within ABZR87_RS17670at 331.554 kb on - strand, within ABZR87_RS17670at 331.554 kb on - strand, within ABZR87_RS17670at 331.554 kb on - strand, within ABZR87_RS17670at 331.554 kb on - strand, within ABZR87_RS17670at 331.707 kb on + strand, within ABZR87_RS17670at 331.708 kb on - strand, within ABZR87_RS17670at 331.708 kb on - strand, within ABZR87_RS17670at 332.022 kb on + strandat 332.022 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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329,449 + ABZR87_RS17660 0.74 +0.1
329,821 + ABZR87_RS17660 0.86 -0.4
329,822 - ABZR87_RS17660 0.86 +0.2
329,822 - ABZR87_RS17660 0.86 -1.1
330,091 + -0.2
330,091 + -0.2
330,091 + +0.8
330,091 + +0.7
330,092 - -0.7
330,092 - +0.4
330,092 - -1.1
330,092 - -0.4
330,092 - -0.2
330,152 + -0.2
330,152 + -0.1
330,152 + -0.1
330,152 + +0.3
330,153 - -0.0
330,153 - +0.2
330,153 - +0.3
330,153 - +1.5
330,153 - +1.0
330,248 + -0.6
330,248 + +1.9
330,249 - +0.4
330,256 + +1.1
330,274 - -1.9
330,274 - +1.2
330,701 + ABZR87_RS17665 0.48 +0.3
330,713 - ABZR87_RS17665 0.50 -1.3
330,713 - ABZR87_RS17665 0.50 -0.2
330,732 + ABZR87_RS17665 0.52 +0.5
330,732 + ABZR87_RS17665 0.52 -1.4
330,732 + ABZR87_RS17665 0.52 +0.9
330,732 + ABZR87_RS17665 0.52 +0.8
330,733 - ABZR87_RS17665 0.53 -0.1
330,733 - ABZR87_RS17665 0.53 -1.8
331,007 + +0.4
331,007 + -0.9
331,007 + -0.3
331,008 - -0.7
331,008 - -0.9
331,008 - -0.3
331,008 - -0.2
331,013 + -0.1
331,013 + -1.1
331,013 + +0.5
331,014 - -1.4
331,014 - -0.7
331,014 - +0.0
331,014 - -0.2
331,051 + -0.3
331,207 + ABZR87_RS17670 0.18 -0.6
331,207 + ABZR87_RS17670 0.18 +1.3
331,207 + ABZR87_RS17670 0.18 +0.1
331,207 + ABZR87_RS17670 0.18 -2.0
331,208 - ABZR87_RS17670 0.18 +0.3
331,208 - ABZR87_RS17670 0.18 +0.7
331,409 - ABZR87_RS17670 0.38 -0.5
331,409 - ABZR87_RS17670 0.38 +1.4
331,461 + ABZR87_RS17670 0.44 -0.5
331,461 + ABZR87_RS17670 0.44 -0.1
331,462 - ABZR87_RS17670 0.44 +0.0
331,477 + ABZR87_RS17670 0.45 -0.2
331,477 + ABZR87_RS17670 0.45 +0.3
331,478 - ABZR87_RS17670 0.46 +0.2
331,553 + ABZR87_RS17670 0.53 -0.3
331,553 + ABZR87_RS17670 0.53 +1.0
331,553 + ABZR87_RS17670 0.53 +0.2
331,554 - ABZR87_RS17670 0.53 -0.3
331,554 - ABZR87_RS17670 0.53 -0.2
331,554 - ABZR87_RS17670 0.53 -1.2
331,554 - ABZR87_RS17670 0.53 -0.9
331,707 + ABZR87_RS17670 0.69 +0.3
331,708 - ABZR87_RS17670 0.69 +0.6
331,708 - ABZR87_RS17670 0.69 +1.4
332,022 + -0.5
332,022 + +1.3

Or see this region's nucleotide sequence