Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17140

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17135 and ABZR87_RS17140 are separated by 206 nucleotidesABZR87_RS17140 and ABZR87_RS17145 are separated by 26 nucleotides ABZR87_RS17135: ABZR87_RS17135 - M20/M25/M40 family metallo-hydrolase, at 189,172 to 190,665 _RS17135 ABZR87_RS17140: ABZR87_RS17140 - LysR family transcriptional regulator, at 190,872 to 191,789 _RS17140 ABZR87_RS17145: ABZR87_RS17145 - AMP nucleosidase, at 191,816 to 193,297 _RS17145 Position (kb) 190 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 189.917 kb on + strand, within ABZR87_RS17135at 189.917 kb on + strand, within ABZR87_RS17135at 189.918 kb on - strand, within ABZR87_RS17135at 189.918 kb on - strand, within ABZR87_RS17135at 189.927 kb on - strand, within ABZR87_RS17135at 190.051 kb on - strand, within ABZR87_RS17135at 190.240 kb on + strand, within ABZR87_RS17135at 190.392 kb on + strand, within ABZR87_RS17135at 190.392 kb on + strand, within ABZR87_RS17135at 190.392 kb on + strand, within ABZR87_RS17135at 190.393 kb on - strand, within ABZR87_RS17135at 190.393 kb on - strand, within ABZR87_RS17135at 190.393 kb on - strand, within ABZR87_RS17135at 190.393 kb on - strand, within ABZR87_RS17135at 190.393 kb on - strand, within ABZR87_RS17135at 190.394 kb on + strand, within ABZR87_RS17135at 190.394 kb on + strand, within ABZR87_RS17135at 190.394 kb on + strand, within ABZR87_RS17135at 190.394 kb on + strand, within ABZR87_RS17135at 190.394 kb on + strand, within ABZR87_RS17135at 190.394 kb on + strand, within ABZR87_RS17135at 190.394 kb on + strand, within ABZR87_RS17135at 190.394 kb on + strand, within ABZR87_RS17135at 190.394 kb on + strand, within ABZR87_RS17135at 190.394 kb on + strand, within ABZR87_RS17135at 190.394 kb on + strand, within ABZR87_RS17135at 190.394 kb on + strand, within ABZR87_RS17135at 190.394 kb on + strand, within ABZR87_RS17135at 190.395 kb on - strand, within ABZR87_RS17135at 190.395 kb on - strand, within ABZR87_RS17135at 190.395 kb on - strand, within ABZR87_RS17135at 190.395 kb on - strand, within ABZR87_RS17135at 190.395 kb on - strand, within ABZR87_RS17135at 190.395 kb on - strand, within ABZR87_RS17135at 190.395 kb on - strand, within ABZR87_RS17135at 190.442 kb on + strand, within ABZR87_RS17135at 190.580 kb on + strandat 190.589 kb on + strandat 190.590 kb on - strandat 190.808 kb on - strandat 190.862 kb on + strandat 190.871 kb on + strandat 190.871 kb on + strandat 190.871 kb on + strandat 190.871 kb on + strandat 190.872 kb on - strandat 190.872 kb on - strandat 190.908 kb on + strandat 191.048 kb on + strand, within ABZR87_RS17140at 191.325 kb on + strand, within ABZR87_RS17140at 191.326 kb on - strand, within ABZR87_RS17140at 191.326 kb on - strand, within ABZR87_RS17140at 191.361 kb on + strand, within ABZR87_RS17140at 191.941 kb on - strandat 192.015 kb on + strand, within ABZR87_RS17145at 192.015 kb on + strand, within ABZR87_RS17145at 192.102 kb on + strand, within ABZR87_RS17145at 192.103 kb on - strand, within ABZR87_RS17145at 192.115 kb on - strand, within ABZR87_RS17145at 192.115 kb on - strand, within ABZR87_RS17145at 192.115 kb on - strand, within ABZR87_RS17145at 192.115 kb on - strand, within ABZR87_RS17145at 192.160 kb on + strand, within ABZR87_RS17145at 192.303 kb on + strand, within ABZR87_RS17145at 192.303 kb on + strand, within ABZR87_RS17145at 192.303 kb on + strand, within ABZR87_RS17145at 192.303 kb on + strand, within ABZR87_RS17145at 192.303 kb on + strand, within ABZR87_RS17145at 192.303 kb on + strand, within ABZR87_RS17145at 192.304 kb on - strand, within ABZR87_RS17145at 192.304 kb on - strand, within ABZR87_RS17145at 192.304 kb on - strand, within ABZR87_RS17145at 192.321 kb on + strand, within ABZR87_RS17145at 192.322 kb on - strand, within ABZR87_RS17145at 192.322 kb on - strand, within ABZR87_RS17145at 192.322 kb on - strand, within ABZR87_RS17145at 192.585 kb on + strand, within ABZR87_RS17145at 192.585 kb on + strand, within ABZR87_RS17145at 192.585 kb on + strand, within ABZR87_RS17145at 192.585 kb on + strand, within ABZR87_RS17145at 192.585 kb on + strand, within ABZR87_RS17145at 192.586 kb on - strand, within ABZR87_RS17145at 192.586 kb on - strand, within ABZR87_RS17145at 192.586 kb on - strand, within ABZR87_RS17145at 192.586 kb on - strand, within ABZR87_RS17145at 192.586 kb on - strand, within ABZR87_RS17145at 192.586 kb on - strand, within ABZR87_RS17145at 192.645 kb on + strand, within ABZR87_RS17145at 192.646 kb on - strand, within ABZR87_RS17145at 192.655 kb on - strand, within ABZR87_RS17145at 192.705 kb on + strand, within ABZR87_RS17145at 192.706 kb on - strand, within ABZR87_RS17145at 192.706 kb on - strand, within ABZR87_RS17145at 192.706 kb on - strand, within ABZR87_RS17145at 192.711 kb on + strand, within ABZR87_RS17145at 192.711 kb on + strand, within ABZR87_RS17145at 192.712 kb on - strand, within ABZR87_RS17145at 192.712 kb on - strand, within ABZR87_RS17145at 192.712 kb on - strand, within ABZR87_RS17145at 192.789 kb on + strand, within ABZR87_RS17145at 192.789 kb on + strand, within ABZR87_RS17145

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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189,917 + ABZR87_RS17135 0.50 -0.5
189,917 + ABZR87_RS17135 0.50 -0.4
189,918 - ABZR87_RS17135 0.50 +0.3
189,918 - ABZR87_RS17135 0.50 -0.6
189,927 - ABZR87_RS17135 0.51 +0.4
190,051 - ABZR87_RS17135 0.59 +2.0
190,240 + ABZR87_RS17135 0.71 -0.3
190,392 + ABZR87_RS17135 0.82 +1.1
190,392 + ABZR87_RS17135 0.82 -0.8
190,392 + ABZR87_RS17135 0.82 -0.9
190,393 - ABZR87_RS17135 0.82 +0.3
190,393 - ABZR87_RS17135 0.82 -1.5
190,393 - ABZR87_RS17135 0.82 +0.7
190,393 - ABZR87_RS17135 0.82 -0.4
190,393 - ABZR87_RS17135 0.82 +0.6
190,394 + ABZR87_RS17135 0.82 +3.6
190,394 + ABZR87_RS17135 0.82 -0.5
190,394 + ABZR87_RS17135 0.82 -3.1
190,394 + ABZR87_RS17135 0.82 +0.5
190,394 + ABZR87_RS17135 0.82 +2.9
190,394 + ABZR87_RS17135 0.82 +0.1
190,394 + ABZR87_RS17135 0.82 +0.3
190,394 + ABZR87_RS17135 0.82 +0.0
190,394 + ABZR87_RS17135 0.82 -0.0
190,394 + ABZR87_RS17135 0.82 +0.2
190,394 + ABZR87_RS17135 0.82 +1.1
190,394 + ABZR87_RS17135 0.82 +0.4
190,394 + ABZR87_RS17135 0.82 +1.1
190,395 - ABZR87_RS17135 0.82 +0.3
190,395 - ABZR87_RS17135 0.82 +1.0
190,395 - ABZR87_RS17135 0.82 +1.1
190,395 - ABZR87_RS17135 0.82 +0.4
190,395 - ABZR87_RS17135 0.82 -0.4
190,395 - ABZR87_RS17135 0.82 -0.4
190,395 - ABZR87_RS17135 0.82 -0.1
190,442 + ABZR87_RS17135 0.85 -0.6
190,580 + -0.1
190,589 + -1.3
190,590 - -1.5
190,808 - -0.2
190,862 + -0.4
190,871 + +0.7
190,871 + -1.7
190,871 + -0.1
190,871 + +2.0
190,872 - -2.6
190,872 - +1.1
190,908 + +0.6
191,048 + ABZR87_RS17140 0.19 +4.8
191,325 + ABZR87_RS17140 0.49 +0.2
191,326 - ABZR87_RS17140 0.49 -0.4
191,326 - ABZR87_RS17140 0.49 -0.1
191,361 + ABZR87_RS17140 0.53 +3.9
191,941 - -0.8
192,015 + ABZR87_RS17145 0.13 -2.8
192,015 + ABZR87_RS17145 0.13 -1.6
192,102 + ABZR87_RS17145 0.19 -2.7
192,103 - ABZR87_RS17145 0.19 -2.7
192,115 - ABZR87_RS17145 0.20 -1.8
192,115 - ABZR87_RS17145 0.20 +0.3
192,115 - ABZR87_RS17145 0.20 -1.3
192,115 - ABZR87_RS17145 0.20 -2.5
192,160 + ABZR87_RS17145 0.23 -2.9
192,303 + ABZR87_RS17145 0.33 -1.4
192,303 + ABZR87_RS17145 0.33 -0.9
192,303 + ABZR87_RS17145 0.33 +1.7
192,303 + ABZR87_RS17145 0.33 -0.9
192,303 + ABZR87_RS17145 0.33 -1.8
192,303 + ABZR87_RS17145 0.33 +0.4
192,304 - ABZR87_RS17145 0.33 -1.5
192,304 - ABZR87_RS17145 0.33 -1.6
192,304 - ABZR87_RS17145 0.33 +0.9
192,321 + ABZR87_RS17145 0.34 -0.6
192,322 - ABZR87_RS17145 0.34 -3.2
192,322 - ABZR87_RS17145 0.34 +0.7
192,322 - ABZR87_RS17145 0.34 -1.3
192,585 + ABZR87_RS17145 0.52 +0.1
192,585 + ABZR87_RS17145 0.52 -2.0
192,585 + ABZR87_RS17145 0.52 -2.2
192,585 + ABZR87_RS17145 0.52 -0.2
192,585 + ABZR87_RS17145 0.52 -3.3
192,586 - ABZR87_RS17145 0.52 -1.7
192,586 - ABZR87_RS17145 0.52 -0.4
192,586 - ABZR87_RS17145 0.52 -0.9
192,586 - ABZR87_RS17145 0.52 -2.0
192,586 - ABZR87_RS17145 0.52 -0.6
192,586 - ABZR87_RS17145 0.52 -0.3
192,645 + ABZR87_RS17145 0.56 +0.6
192,646 - ABZR87_RS17145 0.56 +0.6
192,655 - ABZR87_RS17145 0.57 -1.7
192,705 + ABZR87_RS17145 0.60 -2.4
192,706 - ABZR87_RS17145 0.60 -0.9
192,706 - ABZR87_RS17145 0.60 -0.4
192,706 - ABZR87_RS17145 0.60 -1.7
192,711 + ABZR87_RS17145 0.60 -0.7
192,711 + ABZR87_RS17145 0.60 -2.6
192,712 - ABZR87_RS17145 0.60 -3.6
192,712 - ABZR87_RS17145 0.60 -2.0
192,712 - ABZR87_RS17145 0.60 -2.7
192,789 + ABZR87_RS17145 0.66 -3.1
192,789 + ABZR87_RS17145 0.66 -3.1

Or see this region's nucleotide sequence