Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16940 and ABZR87_RS16945 are separated by 88 nucleotides ABZR87_RS16945 and ABZR87_RS16950 are separated by 207 nucleotides ABZR87_RS16950 and ABZR87_RS16955 are separated by 209 nucleotides ABZR87_RS16955 and ABZR87_RS16960 are separated by 8 nucleotides
ABZR87_RS16940: ABZR87_RS16940 - thioredoxin family protein, at 155,311 to 155,865
_RS16940
ABZR87_RS16945: ABZR87_RS16945 - organic hydroperoxide resistance protein, at 155,954 to 156,370
_RS16945
ABZR87_RS16950: ABZR87_RS16950 - cytochrome c biogenesis protein DipZ, at 156,578 to 158,347
_RS16950
ABZR87_RS16955: ABZR87_RS16955 - response regulator, at 158,557 to 159,300
_RS16955
ABZR87_RS16960: ABZR87_RS16960 - HAMP domain-containing sensor histidine kinase, at 159,309 to 160,625
_RS16960
Position (kb) 156
157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 155.604 kb on - strand, within ABZR87_RS16940 at 155.612 kb on + strand, within ABZR87_RS16940 at 155.613 kb on - strand, within ABZR87_RS16940 at 155.660 kb on + strand, within ABZR87_RS16940 at 155.660 kb on + strand, within ABZR87_RS16940 at 155.660 kb on + strand, within ABZR87_RS16940 at 155.660 kb on + strand, within ABZR87_RS16940 at 155.660 kb on + strand, within ABZR87_RS16940 at 155.661 kb on - strand, within ABZR87_RS16940 at 155.661 kb on - strand, within ABZR87_RS16940 at 155.739 kb on + strand, within ABZR87_RS16940 at 155.739 kb on + strand, within ABZR87_RS16940 at 155.814 kb on - strand at 155.814 kb on - strand at 155.880 kb on - strand at 155.919 kb on + strand at 155.920 kb on - strand at 155.928 kb on + strand at 155.928 kb on + strand at 155.928 kb on + strand at 155.928 kb on + strand at 155.928 kb on + strand at 155.928 kb on + strand at 155.929 kb on - strand at 155.929 kb on - strand at 156.345 kb on + strand at 156.345 kb on + strand at 156.345 kb on + strand at 156.346 kb on - strand at 156.346 kb on - strand at 156.346 kb on - strand at 156.346 kb on - strand at 156.346 kb on - strand at 156.469 kb on + strand at 156.469 kb on + strand at 156.470 kb on - strand at 156.470 kb on - strand at 156.472 kb on + strand at 156.472 kb on + strand at 156.472 kb on + strand at 156.472 kb on + strand at 156.473 kb on - strand at 156.473 kb on - strand at 156.487 kb on + strand at 156.488 kb on - strand at 156.488 kb on - strand at 156.488 kb on - strand at 156.498 kb on + strand at 156.526 kb on - strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.530 kb on - strand at 156.530 kb on - strand at 156.530 kb on - strand at 156.530 kb on - strand at 156.530 kb on - strand at 156.530 kb on - strand at 156.530 kb on - strand at 156.530 kb on - strand at 156.549 kb on - strand at 156.598 kb on - strand at 156.598 kb on - strand at 156.598 kb on - strand at 156.675 kb on + strand at 156.676 kb on - strand at 156.835 kb on - strand, within ABZR87_RS16950 at 156.936 kb on + strand, within ABZR87_RS16950 at 156.936 kb on + strand, within ABZR87_RS16950 at 156.996 kb on + strand, within ABZR87_RS16950 at 157.005 kb on + strand, within ABZR87_RS16950 at 157.005 kb on + strand, within ABZR87_RS16950 at 157.006 kb on - strand, within ABZR87_RS16950 at 157.143 kb on + strand, within ABZR87_RS16950 at 157.143 kb on + strand, within ABZR87_RS16950 at 157.144 kb on - strand, within ABZR87_RS16950 at 157.144 kb on - strand, within ABZR87_RS16950 at 157.144 kb on - strand, within ABZR87_RS16950 at 157.144 kb on - strand, within ABZR87_RS16950 at 157.197 kb on + strand, within ABZR87_RS16950 at 157.198 kb on - strand, within ABZR87_RS16950 at 157.212 kb on + strand, within ABZR87_RS16950 at 157.212 kb on + strand, within ABZR87_RS16950 at 157.212 kb on + strand, within ABZR87_RS16950 at 157.212 kb on + strand, within ABZR87_RS16950 at 157.212 kb on + strand, within ABZR87_RS16950 at 157.213 kb on - strand, within ABZR87_RS16950 at 157.242 kb on + strand, within ABZR87_RS16950 at 157.242 kb on + strand, within ABZR87_RS16950 at 157.242 kb on + strand, within ABZR87_RS16950 at 157.242 kb on + strand, within ABZR87_RS16950 at 157.243 kb on - strand, within ABZR87_RS16950 at 157.243 kb on - strand, within ABZR87_RS16950 at 157.371 kb on + strand, within ABZR87_RS16950 at 157.372 kb on - strand, within ABZR87_RS16950 at 157.372 kb on - strand, within ABZR87_RS16950 at 157.395 kb on + strand, within ABZR87_RS16950 at 157.396 kb on - strand, within ABZR87_RS16950 at 157.428 kb on + strand, within ABZR87_RS16950 at 157.428 kb on + strand, within ABZR87_RS16950 at 157.428 kb on + strand, within ABZR87_RS16950 at 157.428 kb on + strand, within ABZR87_RS16950 at 157.429 kb on - strand, within ABZR87_RS16950 at 157.429 kb on - strand, within ABZR87_RS16950 at 157.440 kb on + strand, within ABZR87_RS16950 at 157.536 kb on - strand, within ABZR87_RS16950 at 157.693 kb on + strand, within ABZR87_RS16950 at 157.693 kb on + strand, within ABZR87_RS16950 at 157.693 kb on + strand, within ABZR87_RS16950 at 157.694 kb on - strand, within ABZR87_RS16950 at 157.694 kb on - strand, within ABZR87_RS16950 at 157.694 kb on - strand, within ABZR87_RS16950 at 157.834 kb on + strand, within ABZR87_RS16950 at 157.834 kb on + strand, within ABZR87_RS16950 at 157.835 kb on - strand, within ABZR87_RS16950 at 158.006 kb on - strand, within ABZR87_RS16950 at 158.088 kb on - strand, within ABZR87_RS16950 at 158.088 kb on - strand, within ABZR87_RS16950 at 158.241 kb on - strand at 158.241 kb on - strand at 158.325 kb on + strand at 158.325 kb on + strand at 158.333 kb on + strand at 158.334 kb on - strand at 158.334 kb on - strand at 158.413 kb on + strand at 158.413 kb on + strand at 158.414 kb on - strand at 158.414 kb on - strand at 158.414 kb on - strand at 158.414 kb on - strand at 158.414 kb on - strand at 158.414 kb on - strand at 158.435 kb on + strand at 158.436 kb on - strand at 158.445 kb on + strand at 158.445 kb on + strand at 158.446 kb on - strand at 158.446 kb on - strand at 158.446 kb on - strand at 158.446 kb on - strand at 158.474 kb on + strand at 158.474 kb on + strand at 158.475 kb on - strand at 158.626 kb on + strand at 158.627 kb on - strand at 158.627 kb on - strand at 158.627 kb on - strand at 158.627 kb on - strand at 158.798 kb on + strand, within ABZR87_RS16955 at 158.798 kb on + strand, within ABZR87_RS16955 at 158.799 kb on - strand, within ABZR87_RS16955 at 158.918 kb on + strand, within ABZR87_RS16955 at 158.918 kb on + strand, within ABZR87_RS16955 at 158.919 kb on - strand, within ABZR87_RS16955 at 159.065 kb on - strand, within ABZR87_RS16955 at 159.229 kb on + strand at 159.229 kb on + strand at 159.230 kb on - strand at 159.256 kb on + strand at 159.256 kb on + strand at 159.256 kb on + strand at 159.256 kb on + strand at 159.256 kb on + strand at 159.256 kb on + strand at 159.256 kb on + strand at 159.256 kb on + strand at 159.257 kb on - strand at 159.257 kb on - strand at 159.257 kb on - strand at 159.257 kb on - strand at 159.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 155,604 - ABZR87_RS16940 0.53 +0.7 155,612 + ABZR87_RS16940 0.54 -0.1 155,613 - ABZR87_RS16940 0.54 +0.2 155,660 + ABZR87_RS16940 0.63 -0.1 155,660 + ABZR87_RS16940 0.63 +1.0 155,660 + ABZR87_RS16940 0.63 -1.8 155,660 + ABZR87_RS16940 0.63 -0.7 155,660 + ABZR87_RS16940 0.63 +1.1 155,661 - ABZR87_RS16940 0.63 +0.9 155,661 - ABZR87_RS16940 0.63 -0.8 155,739 + ABZR87_RS16940 0.77 +2.0 155,739 + ABZR87_RS16940 0.77 -0.8 155,814 - -0.5 155,814 - -0.4 155,880 - -1.2 155,919 + -0.4 155,920 - +0.4 155,928 + -0.3 155,928 + -0.8 155,928 + +0.3 155,928 + +1.2 155,928 + +0.3 155,928 + -0.8 155,929 - -0.1 155,929 - -0.3 156,345 + +0.5 156,345 + +0.6 156,345 + -1.7 156,346 - +0.4 156,346 - -0.4 156,346 - +1.2 156,346 - +1.2 156,346 - +0.1 156,469 + -0.3 156,469 + -0.6 156,470 - +0.6 156,470 - -0.3 156,472 + -0.4 156,472 + -0.3 156,472 + +1.0 156,472 + +1.2 156,473 - +0.3 156,473 - +2.0 156,487 + +0.9 156,488 - +0.9 156,488 - +0.6 156,488 - -1.3 156,498 + +0.4 156,526 - -0.4 156,529 + +1.7 156,529 + +0.2 156,529 + -0.6 156,529 + -0.2 156,529 + +0.1 156,529 + +0.3 156,529 + +3.3 156,529 + +0.1 156,529 + -0.7 156,529 + +0.6 156,529 + -0.8 156,529 + +0.2 156,529 + -0.1 156,529 + +1.4 156,529 + +2.1 156,530 - +0.2 156,530 - +0.7 156,530 - -3.6 156,530 - +1.0 156,530 - +1.3 156,530 - +1.1 156,530 - +0.0 156,530 - +0.3 156,549 - +0.4 156,598 - -0.8 156,598 - -0.5 156,598 - +5.8 156,675 + -0.4 156,676 - -1.8 156,835 - ABZR87_RS16950 0.15 +0.3 156,936 + ABZR87_RS16950 0.20 +0.2 156,936 + ABZR87_RS16950 0.20 +0.9 156,996 + ABZR87_RS16950 0.24 +3.2 157,005 + ABZR87_RS16950 0.24 +0.1 157,005 + ABZR87_RS16950 0.24 -0.0 157,006 - ABZR87_RS16950 0.24 +0.1 157,143 + ABZR87_RS16950 0.32 -0.7 157,143 + ABZR87_RS16950 0.32 -1.3 157,144 - ABZR87_RS16950 0.32 +1.9 157,144 - ABZR87_RS16950 0.32 +0.6 157,144 - ABZR87_RS16950 0.32 +2.2 157,144 - ABZR87_RS16950 0.32 +0.8 157,197 + ABZR87_RS16950 0.35 -1.9 157,198 - ABZR87_RS16950 0.35 -0.5 157,212 + ABZR87_RS16950 0.36 -0.1 157,212 + ABZR87_RS16950 0.36 -0.4 157,212 + ABZR87_RS16950 0.36 -0.1 157,212 + ABZR87_RS16950 0.36 +0.3 157,212 + ABZR87_RS16950 0.36 -0.3 157,213 - ABZR87_RS16950 0.36 -0.5 157,242 + ABZR87_RS16950 0.38 +0.4 157,242 + ABZR87_RS16950 0.38 +1.0 157,242 + ABZR87_RS16950 0.38 +3.9 157,242 + ABZR87_RS16950 0.38 -0.3 157,243 - ABZR87_RS16950 0.38 -0.3 157,243 - ABZR87_RS16950 0.38 -0.5 157,371 + ABZR87_RS16950 0.45 +4.3 157,372 - ABZR87_RS16950 0.45 -0.7 157,372 - ABZR87_RS16950 0.45 +2.7 157,395 + ABZR87_RS16950 0.46 +2.1 157,396 - ABZR87_RS16950 0.46 -0.9 157,428 + ABZR87_RS16950 0.48 -1.2 157,428 + ABZR87_RS16950 0.48 -0.1 157,428 + ABZR87_RS16950 0.48 +0.1 157,428 + ABZR87_RS16950 0.48 +0.5 157,429 - ABZR87_RS16950 0.48 +0.1 157,429 - ABZR87_RS16950 0.48 +0.9 157,440 + ABZR87_RS16950 0.49 +0.0 157,536 - ABZR87_RS16950 0.54 +1.3 157,693 + ABZR87_RS16950 0.63 +0.3 157,693 + ABZR87_RS16950 0.63 +0.1 157,693 + ABZR87_RS16950 0.63 -2.3 157,694 - ABZR87_RS16950 0.63 -0.9 157,694 - ABZR87_RS16950 0.63 +2.7 157,694 - ABZR87_RS16950 0.63 +1.8 157,834 + ABZR87_RS16950 0.71 +0.2 157,834 + ABZR87_RS16950 0.71 -0.5 157,835 - ABZR87_RS16950 0.71 +1.4 158,006 - ABZR87_RS16950 0.81 -0.9 158,088 - ABZR87_RS16950 0.85 +2.0 158,088 - ABZR87_RS16950 0.85 +1.5 158,241 - +4.0 158,241 - -0.2 158,325 + +0.2 158,325 + +0.7 158,333 + -1.1 158,334 - +0.5 158,334 - +0.5 158,413 + -1.3 158,413 + -0.4 158,414 - +0.0 158,414 - -1.6 158,414 - +0.1 158,414 - +0.5 158,414 - -1.8 158,414 - -0.0 158,435 + +0.4 158,436 - -0.5 158,445 + +1.0 158,445 + +1.0 158,446 - +1.4 158,446 - +0.7 158,446 - +0.0 158,446 - +0.6 158,474 + -0.8 158,474 + +0.1 158,475 - -0.2 158,626 + -0.4 158,627 - -0.7 158,627 - +0.3 158,627 - +1.5 158,627 - +1.9 158,798 + ABZR87_RS16955 0.32 -0.3 158,798 + ABZR87_RS16955 0.32 -0.4 158,799 - ABZR87_RS16955 0.33 +0.2 158,918 + ABZR87_RS16955 0.49 +0.1 158,918 + ABZR87_RS16955 0.49 +0.8 158,919 - ABZR87_RS16955 0.49 +1.1 159,065 - ABZR87_RS16955 0.68 -0.6 159,229 + -0.2 159,229 + +1.7 159,230 - +0.5 159,256 + +0.1 159,256 + -1.2 159,256 + +0.7 159,256 + +0.3 159,256 + +0.7 159,256 + +1.6 159,256 + +0.9 159,256 + -0.0 159,257 - +0.2 159,257 - +1.6 159,257 - -0.7 159,257 - -0.2 159,257 - -0.9
Or see this region's nucleotide sequence