Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16605

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16600 and ABZR87_RS16605 overlap by 14 nucleotidesABZR87_RS16605 and ABZR87_RS16610 are separated by 779 nucleotides ABZR87_RS16600: ABZR87_RS16600 - fatty acid desaturase, at 73,122 to 74,096 _RS16600 ABZR87_RS16605: ABZR87_RS16605 - PhnD/SsuA/transferrin family substrate-binding protein, at 74,083 to 74,910 _RS16605 ABZR87_RS16610: ABZR87_RS16610 - hypothetical protein, at 75,690 to 76,058 _RS16610 Position (kb) 74 75Strain fitness (log2 ratio) -2 -1 0 1 2at 73.084 kb on + strandat 73.085 kb on - strandat 73.085 kb on - strandat 73.131 kb on + strandat 73.131 kb on + strandat 73.131 kb on + strandat 73.131 kb on + strandat 73.132 kb on - strandat 73.228 kb on - strand, within ABZR87_RS16600at 73.228 kb on - strand, within ABZR87_RS16600at 73.244 kb on + strand, within ABZR87_RS16600at 73.314 kb on + strand, within ABZR87_RS16600at 73.314 kb on + strand, within ABZR87_RS16600at 73.315 kb on - strand, within ABZR87_RS16600at 73.414 kb on - strand, within ABZR87_RS16600at 73.414 kb on - strand, within ABZR87_RS16600at 73.488 kb on + strand, within ABZR87_RS16600at 73.488 kb on + strand, within ABZR87_RS16600at 73.488 kb on + strand, within ABZR87_RS16600at 73.489 kb on - strand, within ABZR87_RS16600at 73.489 kb on - strand, within ABZR87_RS16600at 73.489 kb on - strand, within ABZR87_RS16600at 73.489 kb on - strand, within ABZR87_RS16600at 73.489 kb on - strand, within ABZR87_RS16600at 73.513 kb on - strand, within ABZR87_RS16600at 73.542 kb on + strand, within ABZR87_RS16600at 73.542 kb on + strand, within ABZR87_RS16600at 73.542 kb on + strand, within ABZR87_RS16600at 73.543 kb on - strand, within ABZR87_RS16600at 73.543 kb on - strand, within ABZR87_RS16600at 73.543 kb on - strand, within ABZR87_RS16600at 73.543 kb on - strand, within ABZR87_RS16600at 73.557 kb on - strand, within ABZR87_RS16600at 73.881 kb on + strand, within ABZR87_RS16600at 73.881 kb on + strand, within ABZR87_RS16600at 73.881 kb on + strand, within ABZR87_RS16600at 73.881 kb on + strand, within ABZR87_RS16600at 73.882 kb on - strand, within ABZR87_RS16600at 73.882 kb on - strand, within ABZR87_RS16600at 73.882 kb on - strand, within ABZR87_RS16600at 73.882 kb on - strand, within ABZR87_RS16600at 73.882 kb on - strand, within ABZR87_RS16600at 73.938 kb on + strand, within ABZR87_RS16600at 73.959 kb on + strand, within ABZR87_RS16600at 73.960 kb on - strand, within ABZR87_RS16600at 73.960 kb on - strand, within ABZR87_RS16600at 74.017 kb on - strandat 74.122 kb on + strandat 74.122 kb on + strandat 74.123 kb on - strandat 74.123 kb on - strandat 74.158 kb on - strandat 74.383 kb on + strand, within ABZR87_RS16605at 74.383 kb on + strand, within ABZR87_RS16605at 74.384 kb on - strand, within ABZR87_RS16605at 74.384 kb on - strand, within ABZR87_RS16605at 74.386 kb on - strand, within ABZR87_RS16605at 74.386 kb on - strand, within ABZR87_RS16605at 74.386 kb on - strand, within ABZR87_RS16605at 74.386 kb on - strand, within ABZR87_RS16605at 74.386 kb on - strand, within ABZR87_RS16605at 74.386 kb on - strand, within ABZR87_RS16605at 74.386 kb on - strand, within ABZR87_RS16605at 75.267 kb on + strandat 75.267 kb on + strandat 75.267 kb on + strandat 75.268 kb on - strandat 75.268 kb on - strandat 75.450 kb on + strandat 75.450 kb on + strandat 75.450 kb on + strandat 75.451 kb on - strandat 75.451 kb on - strandat 75.451 kb on - strandat 75.451 kb on - strandat 75.451 kb on - strandat 75.452 kb on + strandat 75.452 kb on + strandat 75.453 kb on - strandat 75.453 kb on - strandat 75.453 kb on - strandat 75.555 kb on + strandat 75.555 kb on + strandat 75.556 kb on - strandat 75.556 kb on - strandat 75.556 kb on - strandat 75.591 kb on - strandat 75.617 kb on - strandat 75.617 kb on - strandat 75.617 kb on - strandat 75.695 kb on + strandat 75.696 kb on - strandat 75.696 kb on - strandat 75.723 kb on + strandat 75.723 kb on + strandat 75.801 kb on + strand, within ABZR87_RS16610at 75.801 kb on + strand, within ABZR87_RS16610at 75.801 kb on + strand, within ABZR87_RS16610at 75.801 kb on + strand, within ABZR87_RS16610at 75.816 kb on - strand, within ABZR87_RS16610at 75.831 kb on + strand, within ABZR87_RS16610at 75.832 kb on - strand, within ABZR87_RS16610at 75.832 kb on - strand, within ABZR87_RS16610

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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73,084 + -1.9
73,085 - +0.7
73,085 - -0.8
73,131 + -1.8
73,131 + -0.5
73,131 + +0.2
73,131 + -0.1
73,132 - +1.4
73,228 - ABZR87_RS16600 0.11 +0.0
73,228 - ABZR87_RS16600 0.11 +2.6
73,244 + ABZR87_RS16600 0.13 +1.4
73,314 + ABZR87_RS16600 0.20 +0.8
73,314 + ABZR87_RS16600 0.20 -0.3
73,315 - ABZR87_RS16600 0.20 -0.2
73,414 - ABZR87_RS16600 0.30 -1.2
73,414 - ABZR87_RS16600 0.30 +0.1
73,488 + ABZR87_RS16600 0.38 -0.3
73,488 + ABZR87_RS16600 0.38 +0.7
73,488 + ABZR87_RS16600 0.38 +0.4
73,489 - ABZR87_RS16600 0.38 -1.6
73,489 - ABZR87_RS16600 0.38 +1.2
73,489 - ABZR87_RS16600 0.38 -0.0
73,489 - ABZR87_RS16600 0.38 -0.8
73,489 - ABZR87_RS16600 0.38 +0.6
73,513 - ABZR87_RS16600 0.40 +0.1
73,542 + ABZR87_RS16600 0.43 -0.0
73,542 + ABZR87_RS16600 0.43 +0.1
73,542 + ABZR87_RS16600 0.43 +0.4
73,543 - ABZR87_RS16600 0.43 -1.3
73,543 - ABZR87_RS16600 0.43 -0.9
73,543 - ABZR87_RS16600 0.43 +0.1
73,543 - ABZR87_RS16600 0.43 +1.2
73,557 - ABZR87_RS16600 0.45 -2.4
73,881 + ABZR87_RS16600 0.78 -0.7
73,881 + ABZR87_RS16600 0.78 -0.4
73,881 + ABZR87_RS16600 0.78 -2.5
73,881 + ABZR87_RS16600 0.78 +1.7
73,882 - ABZR87_RS16600 0.78 +0.4
73,882 - ABZR87_RS16600 0.78 +0.7
73,882 - ABZR87_RS16600 0.78 -1.8
73,882 - ABZR87_RS16600 0.78 +0.6
73,882 - ABZR87_RS16600 0.78 -0.7
73,938 + ABZR87_RS16600 0.84 -1.2
73,959 + ABZR87_RS16600 0.86 +0.2
73,960 - ABZR87_RS16600 0.86 +0.6
73,960 - ABZR87_RS16600 0.86 +0.6
74,017 - -0.1
74,122 + -0.5
74,122 + -0.3
74,123 - -1.6
74,123 - -0.2
74,158 - -0.5
74,383 + ABZR87_RS16605 0.36 -0.6
74,383 + ABZR87_RS16605 0.36 -2.1
74,384 - ABZR87_RS16605 0.36 -0.1
74,384 - ABZR87_RS16605 0.36 +1.0
74,386 - ABZR87_RS16605 0.37 -1.6
74,386 - ABZR87_RS16605 0.37 +1.7
74,386 - ABZR87_RS16605 0.37 +0.5
74,386 - ABZR87_RS16605 0.37 +0.1
74,386 - ABZR87_RS16605 0.37 -0.9
74,386 - ABZR87_RS16605 0.37 -1.7
74,386 - ABZR87_RS16605 0.37 -0.3
75,267 + +0.3
75,267 + +1.4
75,267 + +0.7
75,268 - +0.3
75,268 - +0.3
75,450 + +1.3
75,450 + -0.4
75,450 + +0.4
75,451 - -0.1
75,451 - -1.5
75,451 - -0.1
75,451 - -1.1
75,451 - +0.1
75,452 + -2.3
75,452 + -0.1
75,453 - -0.0
75,453 - +0.9
75,453 - -2.0
75,555 + +0.5
75,555 + -0.9
75,556 - +0.7
75,556 - -0.1
75,556 - +1.0
75,591 - +0.6
75,617 - +0.9
75,617 - -0.7
75,617 - -0.5
75,695 + +1.5
75,696 - +2.0
75,696 - -0.3
75,723 + +1.5
75,723 + +1.0
75,801 + ABZR87_RS16610 0.30 -2.1
75,801 + ABZR87_RS16610 0.30 -0.1
75,801 + ABZR87_RS16610 0.30 -1.3
75,801 + ABZR87_RS16610 0.30 -0.1
75,816 - ABZR87_RS16610 0.34 +0.7
75,831 + ABZR87_RS16610 0.38 -1.1
75,832 - ABZR87_RS16610 0.38 +0.7
75,832 - ABZR87_RS16610 0.38 -1.2

Or see this region's nucleotide sequence