Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16590 and ABZR87_RS16595 are separated by 19 nucleotides ABZR87_RS16595 and ABZR87_RS16600 are separated by 367 nucleotides
ABZR87_RS16590: ABZR87_RS16590 - ABC transporter permease, at 69,763 to 71,601
_RS16590
ABZR87_RS16595: ABZR87_RS16595 - ABC transporter substrate-binding protein, at 71,621 to 72,754
_RS16595
ABZR87_RS16600: ABZR87_RS16600 - fatty acid desaturase, at 73,122 to 74,096
_RS16600
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 70.739 kb on - strand, within ABZR87_RS16590 at 70.739 kb on - strand, within ABZR87_RS16590 at 70.739 kb on - strand, within ABZR87_RS16590 at 70.739 kb on - strand, within ABZR87_RS16590 at 70.826 kb on + strand, within ABZR87_RS16590 at 70.826 kb on + strand, within ABZR87_RS16590 at 70.826 kb on + strand, within ABZR87_RS16590 at 70.826 kb on + strand, within ABZR87_RS16590 at 70.827 kb on - strand, within ABZR87_RS16590 at 70.955 kb on + strand, within ABZR87_RS16590 at 70.955 kb on + strand, within ABZR87_RS16590 at 70.955 kb on + strand, within ABZR87_RS16590 at 70.955 kb on + strand, within ABZR87_RS16590 at 70.955 kb on + strand, within ABZR87_RS16590 at 70.955 kb on + strand, within ABZR87_RS16590 at 70.956 kb on - strand, within ABZR87_RS16590 at 70.956 kb on - strand, within ABZR87_RS16590 at 70.956 kb on - strand, within ABZR87_RS16590 at 70.956 kb on - strand, within ABZR87_RS16590 at 70.956 kb on - strand, within ABZR87_RS16590 at 70.956 kb on - strand, within ABZR87_RS16590 at 70.958 kb on + strand, within ABZR87_RS16590 at 70.958 kb on + strand, within ABZR87_RS16590 at 70.958 kb on + strand, within ABZR87_RS16590 at 70.958 kb on + strand, within ABZR87_RS16590 at 70.958 kb on + strand, within ABZR87_RS16590 at 70.958 kb on + strand, within ABZR87_RS16590 at 70.958 kb on + strand, within ABZR87_RS16590 at 70.959 kb on - strand, within ABZR87_RS16590 at 70.959 kb on - strand, within ABZR87_RS16590 at 70.959 kb on - strand, within ABZR87_RS16590 at 70.959 kb on - strand, within ABZR87_RS16590 at 71.105 kb on + strand, within ABZR87_RS16590 at 71.106 kb on - strand, within ABZR87_RS16590 at 71.116 kb on + strand, within ABZR87_RS16590 at 71.116 kb on + strand, within ABZR87_RS16590 at 71.276 kb on + strand, within ABZR87_RS16590 at 71.276 kb on + strand, within ABZR87_RS16590 at 71.276 kb on + strand, within ABZR87_RS16590 at 71.276 kb on + strand, within ABZR87_RS16590 at 71.277 kb on - strand, within ABZR87_RS16590 at 71.457 kb on + strand at 71.457 kb on + strand at 71.458 kb on - strand at 71.458 kb on - strand at 71.459 kb on + strand at 71.534 kb on + strand at 71.534 kb on + strand at 71.534 kb on + strand at 71.534 kb on + strand at 71.534 kb on + strand at 71.534 kb on + strand at 71.534 kb on + strand at 71.535 kb on - strand at 71.535 kb on - strand at 71.535 kb on - strand at 71.535 kb on - strand at 71.538 kb on + strand at 71.538 kb on + strand at 71.538 kb on + strand at 71.538 kb on + strand at 71.539 kb on - strand at 71.539 kb on - strand at 71.539 kb on - strand at 71.539 kb on - strand at 71.567 kb on + strand at 71.568 kb on - strand at 71.883 kb on + strand, within ABZR87_RS16595 at 71.883 kb on + strand, within ABZR87_RS16595 at 71.883 kb on + strand, within ABZR87_RS16595 at 71.884 kb on - strand, within ABZR87_RS16595 at 71.954 kb on - strand, within ABZR87_RS16595 at 71.954 kb on - strand, within ABZR87_RS16595 at 72.006 kb on + strand, within ABZR87_RS16595 at 72.006 kb on + strand, within ABZR87_RS16595 at 72.006 kb on + strand, within ABZR87_RS16595 at 72.006 kb on + strand, within ABZR87_RS16595 at 72.007 kb on - strand, within ABZR87_RS16595 at 72.007 kb on - strand, within ABZR87_RS16595 at 72.007 kb on - strand, within ABZR87_RS16595 at 72.084 kb on + strand, within ABZR87_RS16595 at 72.084 kb on + strand, within ABZR87_RS16595 at 72.085 kb on - strand, within ABZR87_RS16595 at 72.085 kb on - strand, within ABZR87_RS16595 at 72.087 kb on + strand, within ABZR87_RS16595 at 72.088 kb on - strand, within ABZR87_RS16595 at 72.088 kb on - strand, within ABZR87_RS16595 at 72.174 kb on + strand, within ABZR87_RS16595 at 72.264 kb on + strand, within ABZR87_RS16595 at 72.410 kb on + strand, within ABZR87_RS16595 at 72.410 kb on + strand, within ABZR87_RS16595 at 72.411 kb on - strand, within ABZR87_RS16595 at 72.411 kb on - strand, within ABZR87_RS16595 at 72.429 kb on + strand, within ABZR87_RS16595 at 72.429 kb on + strand, within ABZR87_RS16595 at 72.430 kb on - strand, within ABZR87_RS16595 at 72.430 kb on - strand, within ABZR87_RS16595 at 72.430 kb on - strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.562 kb on - strand, within ABZR87_RS16595 at 72.562 kb on - strand, within ABZR87_RS16595 at 72.562 kb on - strand, within ABZR87_RS16595 at 72.562 kb on - strand, within ABZR87_RS16595 at 72.645 kb on + strand at 72.645 kb on + strand at 72.646 kb on - strand at 72.687 kb on + strand at 72.687 kb on + strand at 72.687 kb on + strand at 72.687 kb on + strand at 72.687 kb on + strand at 72.688 kb on - strand at 72.688 kb on - strand at 72.836 kb on + strand at 72.837 kb on - strand at 72.851 kb on + strand at 72.851 kb on + strand at 72.852 kb on - strand at 72.852 kb on - strand at 72.883 kb on + strand at 72.883 kb on + strand at 72.883 kb on + strand at 72.883 kb on + strand at 72.883 kb on + strand at 72.883 kb on + strand at 72.883 kb on + strand at 72.883 kb on + strand at 72.884 kb on - strand at 72.884 kb on - strand at 72.884 kb on - strand at 72.884 kb on - strand at 72.916 kb on + strand at 72.917 kb on - strand at 72.917 kb on - strand at 73.038 kb on + strand at 73.038 kb on + strand at 73.038 kb on + strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.084 kb on + strand at 73.085 kb on - strand at 73.085 kb on - strand at 73.131 kb on + strand at 73.131 kb on + strand at 73.131 kb on + strand at 73.131 kb on + strand at 73.132 kb on - strand at 73.228 kb on - strand, within ABZR87_RS16600 at 73.228 kb on - strand, within ABZR87_RS16600 at 73.244 kb on + strand, within ABZR87_RS16600 at 73.314 kb on + strand, within ABZR87_RS16600 at 73.314 kb on + strand, within ABZR87_RS16600 at 73.315 kb on - strand, within ABZR87_RS16600 at 73.414 kb on - strand, within ABZR87_RS16600 at 73.414 kb on - strand, within ABZR87_RS16600 at 73.488 kb on + strand, within ABZR87_RS16600 at 73.488 kb on + strand, within ABZR87_RS16600 at 73.488 kb on + strand, within ABZR87_RS16600 at 73.489 kb on - strand, within ABZR87_RS16600 at 73.489 kb on - strand, within ABZR87_RS16600 at 73.489 kb on - strand, within ABZR87_RS16600 at 73.489 kb on - strand, within ABZR87_RS16600 at 73.489 kb on - strand, within ABZR87_RS16600 at 73.513 kb on - strand, within ABZR87_RS16600 at 73.542 kb on + strand, within ABZR87_RS16600 at 73.542 kb on + strand, within ABZR87_RS16600 at 73.542 kb on + strand, within ABZR87_RS16600 at 73.543 kb on - strand, within ABZR87_RS16600 at 73.543 kb on - strand, within ABZR87_RS16600 at 73.543 kb on - strand, within ABZR87_RS16600 at 73.543 kb on - strand, within ABZR87_RS16600 at 73.557 kb on - strand, within ABZR87_RS16600
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 70,739 - ABZR87_RS16590 0.53 +0.1 70,739 - ABZR87_RS16590 0.53 +1.8 70,739 - ABZR87_RS16590 0.53 +0.4 70,739 - ABZR87_RS16590 0.53 +0.9 70,826 + ABZR87_RS16590 0.58 +0.7 70,826 + ABZR87_RS16590 0.58 +0.0 70,826 + ABZR87_RS16590 0.58 +0.8 70,826 + ABZR87_RS16590 0.58 +1.6 70,827 - ABZR87_RS16590 0.58 +0.3 70,955 + ABZR87_RS16590 0.65 +0.4 70,955 + ABZR87_RS16590 0.65 +0.5 70,955 + ABZR87_RS16590 0.65 +0.2 70,955 + ABZR87_RS16590 0.65 +0.4 70,955 + ABZR87_RS16590 0.65 -0.5 70,955 + ABZR87_RS16590 0.65 +1.2 70,956 - ABZR87_RS16590 0.65 +0.3 70,956 - ABZR87_RS16590 0.65 -0.2 70,956 - ABZR87_RS16590 0.65 -0.4 70,956 - ABZR87_RS16590 0.65 -1.1 70,956 - ABZR87_RS16590 0.65 -1.9 70,956 - ABZR87_RS16590 0.65 +1.7 70,958 + ABZR87_RS16590 0.65 +0.2 70,958 + ABZR87_RS16590 0.65 +0.1 70,958 + ABZR87_RS16590 0.65 +0.1 70,958 + ABZR87_RS16590 0.65 +0.4 70,958 + ABZR87_RS16590 0.65 +0.8 70,958 + ABZR87_RS16590 0.65 +0.4 70,958 + ABZR87_RS16590 0.65 -1.4 70,959 - ABZR87_RS16590 0.65 +0.9 70,959 - ABZR87_RS16590 0.65 +0.6 70,959 - ABZR87_RS16590 0.65 +0.2 70,959 - ABZR87_RS16590 0.65 +0.6 71,105 + ABZR87_RS16590 0.73 -0.0 71,106 - ABZR87_RS16590 0.73 -0.0 71,116 + ABZR87_RS16590 0.74 +1.0 71,116 + ABZR87_RS16590 0.74 -0.7 71,276 + ABZR87_RS16590 0.82 +0.6 71,276 + ABZR87_RS16590 0.82 +0.2 71,276 + ABZR87_RS16590 0.82 -0.7 71,276 + ABZR87_RS16590 0.82 -1.7 71,277 - ABZR87_RS16590 0.82 -0.4 71,457 + +0.7 71,457 + -0.7 71,458 - -1.2 71,458 - -0.4 71,459 + -0.1 71,534 + -0.3 71,534 + -0.6 71,534 + -1.4 71,534 + -0.8 71,534 + +0.5 71,534 + -1.0 71,534 + +0.9 71,535 - +0.2 71,535 - -0.3 71,535 - -0.7 71,535 - -0.1 71,538 + -0.1 71,538 + +0.8 71,538 + +0.5 71,538 + -1.2 71,539 - +0.1 71,539 - -0.2 71,539 - -0.7 71,539 - -0.3 71,567 + -0.3 71,568 - +0.6 71,883 + ABZR87_RS16595 0.23 -1.2 71,883 + ABZR87_RS16595 0.23 -1.7 71,883 + ABZR87_RS16595 0.23 -0.1 71,884 - ABZR87_RS16595 0.23 -0.6 71,954 - ABZR87_RS16595 0.29 -0.1 71,954 - ABZR87_RS16595 0.29 -1.8 72,006 + ABZR87_RS16595 0.34 -1.4 72,006 + ABZR87_RS16595 0.34 -0.3 72,006 + ABZR87_RS16595 0.34 -0.6 72,006 + ABZR87_RS16595 0.34 +0.9 72,007 - ABZR87_RS16595 0.34 -0.4 72,007 - ABZR87_RS16595 0.34 -0.7 72,007 - ABZR87_RS16595 0.34 -0.1 72,084 + ABZR87_RS16595 0.41 -0.8 72,084 + ABZR87_RS16595 0.41 -0.8 72,085 - ABZR87_RS16595 0.41 -0.8 72,085 - ABZR87_RS16595 0.41 +0.6 72,087 + ABZR87_RS16595 0.41 +0.5 72,088 - ABZR87_RS16595 0.41 +0.0 72,088 - ABZR87_RS16595 0.41 +0.9 72,174 + ABZR87_RS16595 0.49 +0.7 72,264 + ABZR87_RS16595 0.57 -0.3 72,410 + ABZR87_RS16595 0.70 -0.8 72,410 + ABZR87_RS16595 0.70 +2.6 72,411 - ABZR87_RS16595 0.70 -1.4 72,411 - ABZR87_RS16595 0.70 -0.4 72,429 + ABZR87_RS16595 0.71 -0.3 72,429 + ABZR87_RS16595 0.71 -0.7 72,430 - ABZR87_RS16595 0.71 -1.0 72,430 - ABZR87_RS16595 0.71 -1.0 72,430 - ABZR87_RS16595 0.71 -1.5 72,561 + ABZR87_RS16595 0.83 -0.4 72,561 + ABZR87_RS16595 0.83 -1.1 72,561 + ABZR87_RS16595 0.83 -0.3 72,561 + ABZR87_RS16595 0.83 -0.8 72,561 + ABZR87_RS16595 0.83 -0.7 72,561 + ABZR87_RS16595 0.83 -1.1 72,562 - ABZR87_RS16595 0.83 -0.9 72,562 - ABZR87_RS16595 0.83 +0.7 72,562 - ABZR87_RS16595 0.83 -2.1 72,562 - ABZR87_RS16595 0.83 -1.0 72,645 + +0.2 72,645 + -0.9 72,646 - -0.4 72,687 + -0.0 72,687 + -0.4 72,687 + +1.1 72,687 + -0.3 72,687 + -0.4 72,688 - -0.1 72,688 - +2.0 72,836 + +0.3 72,837 - +0.1 72,851 + -0.7 72,851 + +2.1 72,852 - -1.5 72,852 - -2.5 72,883 + +1.0 72,883 + +3.9 72,883 + -0.8 72,883 + -0.6 72,883 + +1.2 72,883 + -0.2 72,883 + -0.1 72,883 + -0.2 72,884 - +0.6 72,884 - +0.8 72,884 - -0.1 72,884 - -0.6 72,916 + +0.6 72,917 - +0.6 72,917 - +0.3 73,038 + -0.5 73,038 + -0.3 73,038 + +1.3 73,039 - -0.1 73,039 - -0.8 73,039 - -1.2 73,039 - +0.8 73,039 - -1.2 73,039 - +0.2 73,039 - -0.7 73,039 - +1.2 73,039 - +0.2 73,039 - -1.2 73,084 + -1.9 73,085 - +0.7 73,085 - -0.8 73,131 + -1.8 73,131 + -0.5 73,131 + +0.2 73,131 + -0.1 73,132 - +1.4 73,228 - ABZR87_RS16600 0.11 +0.0 73,228 - ABZR87_RS16600 0.11 +2.6 73,244 + ABZR87_RS16600 0.13 +1.4 73,314 + ABZR87_RS16600 0.20 +0.8 73,314 + ABZR87_RS16600 0.20 -0.3 73,315 - ABZR87_RS16600 0.20 -0.2 73,414 - ABZR87_RS16600 0.30 -1.2 73,414 - ABZR87_RS16600 0.30 +0.1 73,488 + ABZR87_RS16600 0.38 -0.3 73,488 + ABZR87_RS16600 0.38 +0.7 73,488 + ABZR87_RS16600 0.38 +0.4 73,489 - ABZR87_RS16600 0.38 -1.6 73,489 - ABZR87_RS16600 0.38 +1.2 73,489 - ABZR87_RS16600 0.38 -0.0 73,489 - ABZR87_RS16600 0.38 -0.8 73,489 - ABZR87_RS16600 0.38 +0.6 73,513 - ABZR87_RS16600 0.40 +0.1 73,542 + ABZR87_RS16600 0.43 -0.0 73,542 + ABZR87_RS16600 0.43 +0.1 73,542 + ABZR87_RS16600 0.43 +0.4 73,543 - ABZR87_RS16600 0.43 -1.3 73,543 - ABZR87_RS16600 0.43 -0.9 73,543 - ABZR87_RS16600 0.43 +0.1 73,543 - ABZR87_RS16600 0.43 +1.2 73,557 - ABZR87_RS16600 0.45 -2.4
Or see this region's nucleotide sequence