Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13665

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
2,885,677	+				-0.4
2,885,677	+				-0.5
2,885,677	+				+3.0
2,885,677	+				-1.1
2,885,677	+				-1.2
2,885,677	+				+0.6
2,885,677	+				-2.3
2,885,677	+				+0.4
2,885,677	+				+0.2
2,885,677	+				-1.0
2,885,678	-				+0.2
2,885,678	-				+0.1
2,885,678	-				+0.0
2,885,678	-				-0.9
2,885,678	-				+0.1
2,885,678	-				+0.6
2,885,731	+				+0.1
2,885,731	+				-1.0
2,885,731	+				-2.9
2,885,732	-				-1.1
2,885,732	-				-2.5
2,885,732	-				+0.5
2,885,732	-				-0.0
2,885,734	+				-0.1
2,885,734	+				+0.0
2,885,735	-				+0.7
2,885,755	+				+1.5
2,885,755	+				+0.1
2,885,755	+				+0.4
2,885,755	+				+0.5
2,885,755	+				-0.0
2,885,755	+				+0.3
2,885,755	+				+0.3
2,885,755	+				+1.0
2,885,755	+				+0.0
2,885,755	+				-0.0
2,885,755	+				-1.8
2,885,755	+				-1.5
2,885,755	+				+0.3
2,885,755	+				-0.6
2,885,755	+				+0.0
2,885,755	+				-0.1
2,885,755	+				-0.1
2,885,756	-				+0.9
2,885,756	-				-0.2
2,885,756	-				+1.0
2,885,756	-				-0.4
2,885,756	-				-0.8
2,885,756	-				-0.9
2,885,756	-				+0.8
2,885,756	-				-1.2
2,885,756	-				+0.0
2,885,756	-				+2.1
2,885,756	-				-0.1
2,885,758	+				+0.3
2,885,759	-				+2.9
2,885,770	+				-1.6
2,885,770	+				-0.6
2,885,857	+				-0.1
2,885,857	+				-0.5
2,885,857	+				+0.4
2,885,857	+				+1.8
2,885,857	+				-2.7
2,885,857	+				+0.4
2,885,857	+				-0.2
2,885,858	-				-0.5
2,885,858	-				-1.1
2,885,858	-				-1.1
2,885,858	-				-0.7
2,885,858	-				-0.4
2,885,858	-				+1.0
2,885,858	-				+0.3
2,885,858	-				+1.0
2,885,858	-				+0.7
2,885,858	-				+0.9
2,885,884	+				+1.4
2,885,884	+				+1.4
2,885,884	+				+0.2
2,885,884	+				+0.1
2,885,885	-				-0.1
2,885,905	+				+1.5
2,885,905	+				-0.5
2,885,905	+				-0.7
2,885,905	+				+0.2
2,885,906	-				-1.1
2,885,906	-				+0.8
2,885,981	+				-0.0
2,885,981	+				-1.0
2,885,981	+				+0.1
2,885,981	+				+0.7
2,885,981	+				+0.1
2,885,981	+				-0.8
2,885,982	-				+1.0
2,885,982	-				+0.8
2,886,037	+		ABZR87_RS13655	0.14	-0.0
2,886,038	-		ABZR87_RS13655	0.15	-0.9
2,886,038	-		ABZR87_RS13655	0.15	+0.3
2,886,057	+		ABZR87_RS13655	0.21	+0.3
2,886,164	+		ABZR87_RS13655	0.57	+0.0
2,886,164	+		ABZR87_RS13655	0.57	-0.5
2,886,164	+		ABZR87_RS13655	0.57	-0.2
2,886,164	+		ABZR87_RS13655	0.57	-0.2
2,886,164	+		ABZR87_RS13655	0.57	-0.0
2,886,165	-		ABZR87_RS13655	0.58	-0.5
2,886,170	+		ABZR87_RS13655	0.60	-0.4
2,886,170	+		ABZR87_RS13655	0.60	+1.0
2,886,170	+		ABZR87_RS13655	0.60	+0.0
2,886,170	+		ABZR87_RS13655	0.60	+0.5
2,886,171	-		ABZR87_RS13655	0.60	-0.5
2,886,211	+		ABZR87_RS13655	0.73	+0.1
2,886,211	+		ABZR87_RS13655	0.73	-1.0
2,886,211	+		ABZR87_RS13655	0.73	+1.0
2,886,212	-		ABZR87_RS13655	0.74	+0.7
2,886,212	-		ABZR87_RS13655	0.74	-1.2
2,886,284	-				+0.9
2,886,292	+				-1.0
2,886,293	-				+0.0
2,886,293	-				-1.1
2,886,293	-				+0.1
2,886,293	-				+1.1
2,886,296	+				-0.6
2,886,338	+				-1.9
2,886,339	-				-0.6
2,886,405	-		ABZR87_RS13660	0.38	-0.4
2,886,491	+		ABZR87_RS13660	0.81	-0.6
2,886,491	+		ABZR87_RS13660	0.81	-0.8
2,886,491	+		ABZR87_RS13660	0.81	-1.0
2,886,491	+		ABZR87_RS13660	0.81	+0.1
2,886,492	-		ABZR87_RS13660	0.81	-1.1
2,886,492	-		ABZR87_RS13660	0.81	-0.4
2,886,492	-		ABZR87_RS13660	0.81	-0.2
2,886,492	-		ABZR87_RS13660	0.81	+0.5
2,886,492	-		ABZR87_RS13660	0.81	+0.5
2,886,492	-		ABZR87_RS13660	0.81	-0.2
2,886,492	-		ABZR87_RS13660	0.81	-1.0
2,886,497	+		ABZR87_RS13660	0.84	+0.7
2,886,497	+		ABZR87_RS13660	0.84	-0.2
2,886,497	+		ABZR87_RS13660	0.84	+0.5
2,886,497	+		ABZR87_RS13660	0.84	-1.2
2,886,497	+		ABZR87_RS13660	0.84	-1.2
2,886,498	-		ABZR87_RS13660	0.84	-1.1
2,886,498	-		ABZR87_RS13660	0.84	-0.6
2,886,498	-		ABZR87_RS13660	0.84	+1.1
2,886,498	-		ABZR87_RS13660	0.84	-1.3
2,886,498	-		ABZR87_RS13660	0.84	-1.5
2,886,516	-				-0.9
2,886,516	-				-0.4
2,886,536	+				-0.3
2,886,841	+		ABZR87_RS13665	0.43	-1.0
2,886,841	+		ABZR87_RS13665	0.43	+1.4
2,886,842	-		ABZR87_RS13665	0.44	-1.3
2,886,842	-		ABZR87_RS13665	0.44	-0.6
2,886,865	+		ABZR87_RS13665	0.49	-0.9
2,886,866	-		ABZR87_RS13665	0.49	-1.3
2,886,866	-		ABZR87_RS13665	0.49	-0.1
2,886,866	-		ABZR87_RS13665	0.49	+0.0
2,886,874	+		ABZR87_RS13665	0.51	-0.1
2,886,874	+		ABZR87_RS13665	0.51	+0.7
2,886,874	+		ABZR87_RS13665	0.51	-0.2
2,886,874	+		ABZR87_RS13665	0.51	-0.0
2,886,875	-		ABZR87_RS13665	0.52	+0.3
2,886,875	-		ABZR87_RS13665	0.52	+0.4
2,886,875	-		ABZR87_RS13665	0.52	-1.5
2,886,878	+		ABZR87_RS13665	0.52	-0.1
2,886,878	+		ABZR87_RS13665	0.52	-0.3
2,886,878	+		ABZR87_RS13665	0.52	-1.2
2,886,878	+		ABZR87_RS13665	0.52	-0.3
2,886,878	+		ABZR87_RS13665	0.52	-3.0
2,886,879	-		ABZR87_RS13665	0.52	-0.5
2,886,879	-		ABZR87_RS13665	0.52	-0.3
2,886,879	-		ABZR87_RS13665	0.52	-0.4
2,886,879	-		ABZR87_RS13665	0.52	+0.2
2,886,936	+		ABZR87_RS13665	0.66	+0.7
2,886,937	-		ABZR87_RS13665	0.66	-0.4
2,886,937	-		ABZR87_RS13665	0.66	-0.9
2,886,939	+		ABZR87_RS13665	0.67	-1.1
2,886,939	+		ABZR87_RS13665	0.67	+0.2
2,886,939	+		ABZR87_RS13665	0.67	+0.2
2,886,940	-		ABZR87_RS13665	0.67	-0.1
2,886,973	+		ABZR87_RS13665	0.75	-1.8
2,886,974	-		ABZR87_RS13665	0.75	+1.0
2,886,979	+		ABZR87_RS13665	0.76	+1.4
2,886,979	+		ABZR87_RS13665	0.76	+0.0
2,886,979	+		ABZR87_RS13665	0.76	+1.0
2,886,979	+		ABZR87_RS13665	0.76	-1.1
2,886,979	+		ABZR87_RS13665	0.76	+1.4
2,886,979	+		ABZR87_RS13665	0.76	+0.7
2,886,979	+		ABZR87_RS13665	0.76	+0.1
2,886,979	+		ABZR87_RS13665	0.76	+0.9
2,886,979	+		ABZR87_RS13665	0.76	+1.4
2,886,980	-		ABZR87_RS13665	0.76	-2.3
2,886,980	-		ABZR87_RS13665	0.76	-1.1
2,886,980	-		ABZR87_RS13665	0.76	+0.2
2,886,980	-		ABZR87_RS13665	0.76	-0.2
2,886,980	-		ABZR87_RS13665	0.76	-1.4
2,887,071	+				-0.5
2,887,071	+				-0.7
2,887,071	+				+0.5
2,887,072	-				+0.4
2,887,072	-				+3.1
2,887,092	-				-1.1
2,887,138	+				+0.3
2,887,203	+				-1.2
2,887,203	+				-0.6
2,887,203	+				-0.8
2,887,203	+				-0.0
2,887,203	+				-1.7
2,887,203	+				-0.3
2,887,203	+				-0.0
2,887,203	+				+2.7
2,887,203	+				-0.8
2,887,203	+				+1.1
2,887,204	-				+0.1
2,887,204	-				-1.4
2,887,204	-				-0.3
2,887,204	-				+0.0
2,887,204	-				+1.9
2,887,204	-				+0.4
2,887,230	+				+0.4
2,887,230	+				-1.0
2,887,230	+				-0.5
2,887,230	+				+0.2
2,887,231	-				-1.5
2,887,231	-				+0.0
2,887,231	-				-1.9
2,887,231	-				-1.2
2,887,329	+		ABZR87_RS13670	0.26	+0.3
2,887,330	-		ABZR87_RS13670	0.27	+0.9
2,887,358	+		ABZR87_RS13670	0.36	+1.6
2,887,359	-		ABZR87_RS13670	0.36	+0.5
2,887,359	-		ABZR87_RS13670	0.36	+0.2
2,887,359	-		ABZR87_RS13670	0.36	-0.9
2,887,359	-		ABZR87_RS13670	0.36	+2.5
2,887,413	+		ABZR87_RS13670	0.54	+1.2
2,887,413	+		ABZR87_RS13670	0.54	+0.5
2,887,413	+		ABZR87_RS13670	0.54	-0.4
2,887,413	+		ABZR87_RS13670	0.54	-0.5
2,887,414	-		ABZR87_RS13670	0.54	-0.7
2,887,453	+		ABZR87_RS13670	0.67	+0.2
2,887,454	-		ABZR87_RS13670	0.67	-0.0
2,887,454	-		ABZR87_RS13670	0.67	+0.3
2,887,454	-		ABZR87_RS13670	0.67	-0.7
2,887,454	-		ABZR87_RS13670	0.67	+0.6
2,887,521	+		ABZR87_RS13670	0.89	-0.1
2,887,521	+		ABZR87_RS13670	0.89	-0.2
2,887,521	+		ABZR87_RS13670	0.89	-0.4
2,887,521	+		ABZR87_RS13670	0.89	-0.2
2,887,521	+		ABZR87_RS13670	0.89	-0.2
2,887,521	+		ABZR87_RS13670	0.89	+0.2
2,887,522	-		ABZR87_RS13670	0.90	-0.7
2,887,522	-		ABZR87_RS13670	0.90	-1.3
2,887,522	-		ABZR87_RS13670	0.90	+0.3
2,887,522	-		ABZR87_RS13670	0.90	+0.6
2,887,567	+				+0.3
2,887,567	+				+1.9
2,887,567	+				-0.6
2,887,568	-				+0.2
2,887,575	+				+1.9
2,887,607	+				-0.3
2,887,607	+				+0.7
2,887,607	+				-0.5
2,887,608	-				-1.1
2,887,608	-				-1.4
2,887,608	-				-1.2
2,887,609	+				-0.2
2,887,609	+				-0.8
2,887,609	+				-0.2
2,887,609	+				-2.3
2,887,609	+				+0.1
2,887,609	+				+0.1
2,887,609	+				+0.2
2,887,609	+				+0.3
2,887,609	+				+0.3
2,887,609	+				+0.0
2,887,609	+				+1.2
2,887,610	-				+0.4
2,887,610	-				-0.7
2,887,610	-				-0.1
2,887,610	-				-0.2
2,887,610	-				+0.8
2,887,610	-				+0.7
2,887,610	-				-1.4
2,887,610	-				-1.5
2,887,691	+		ABZR87_RS13675	0.30	-0.9
2,887,692	-		ABZR87_RS13675	0.30	-0.3
2,887,789	+		ABZR87_RS13675	0.63	-0.3
2,887,789	+		ABZR87_RS13675	0.63	-0.0
2,887,836	-		ABZR87_RS13675	0.79	-0.4
2,887,846	+		ABZR87_RS13675	0.82	-1.6
2,887,846	+		ABZR87_RS13675	0.82	+0.7
2,887,846	+		ABZR87_RS13675	0.82	+0.0
2,887,847	-		ABZR87_RS13675	0.82	-0.2
2,887,879	+				-1.2
2,887,879	+				+0.1
2,887,880	-				+0.7
2,887,880	-				-0.1
2,887,880	-				+0.6
2,887,880	-				+1.3
2,887,880	-				+6.5
2,887,880	-				+1.0
2,887,880	-				-0.5
2,887,926	+				-0.3
2,887,931	+				-0.5
2,887,932	+				+0.8
2,887,983	+		ABZR87_RS13680	0.17	-0.3
2,887,983	+		ABZR87_RS13680	0.17	-0.1
2,887,984	-		ABZR87_RS13680	0.17	-0.7
2,887,984	-		ABZR87_RS13680	0.17	+2.7
2,887,999	+		ABZR87_RS13680	0.21	+0.4
2,888,000	-		ABZR87_RS13680	0.21	+2.3
2,888,023	-		ABZR87_RS13680	0.27	-0.4
2,888,043	+		ABZR87_RS13680	0.32	+1.6
2,888,043	+		ABZR87_RS13680	0.32	-0.7
2,888,043	+		ABZR87_RS13680	0.32	-0.4
2,888,043	+		ABZR87_RS13680	0.32	+0.3
2,888,044	-		ABZR87_RS13680	0.32	-0.5
2,888,044	-		ABZR87_RS13680	0.32	-0.1
2,888,044	-		ABZR87_RS13680	0.32	-1.3
2,888,044	-		ABZR87_RS13680	0.32	+0.2
2,888,044	-		ABZR87_RS13680	0.32	+0.4
2,888,044	-		ABZR87_RS13680	0.32	-0.1
2,888,044	-		ABZR87_RS13680	0.32	-0.4
2,888,069	-		ABZR87_RS13680	0.38	+1.1