Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10270

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
2,174,729	+				-0.3
2,174,761	+				-0.5
2,174,761	+				+0.5
2,174,761	+				+0.8
2,174,761	+				-0.2
2,174,761	+				-0.2
2,174,838	+				-0.2
2,174,838	+				-0.8
2,174,838	+				+0.6
2,175,029	+				+0.4
2,175,172	+				-2.1
2,175,172	+				+0.1
2,175,172	+				+0.0
2,175,172	+				+0.1
2,175,173	-				+0.1
2,175,173	-				-0.6
2,175,173	-				+0.1
2,175,173	-				+1.4
2,175,192	-				-0.6
2,175,192	-				-0.4
2,175,237	+				+1.2
2,175,237	+				+0.3
2,175,238	-				+1.0
2,175,296	-				+0.7
2,175,358	+				+0.4
2,175,358	+				+0.0
2,175,359	-				+0.1
2,175,359	-				-0.7
2,175,362	+				+2.2
2,175,362	+				-2.0
2,175,362	+				-0.5
2,175,414	-				-2.3
2,175,471	+		ABZR87_RS10270	0.11	-0.6
2,175,508	+		ABZR87_RS10270	0.13	+2.8
2,175,528	-		ABZR87_RS10270	0.14	-0.1
2,175,647	+		ABZR87_RS10270	0.21	-0.7
2,175,647	+		ABZR87_RS10270	0.21	-1.0
2,175,648	-		ABZR87_RS10270	0.21	-0.2
2,175,653	+		ABZR87_RS10270	0.21	-0.0
2,175,653	+		ABZR87_RS10270	0.21	+1.9
2,175,654	-		ABZR87_RS10270	0.21	+0.1
2,175,665	+		ABZR87_RS10270	0.22	+0.5
2,175,665	+		ABZR87_RS10270	0.22	-0.4
2,175,667	+		ABZR87_RS10270	0.22	+1.1
2,175,667	+		ABZR87_RS10270	0.22	+0.5
2,175,667	+		ABZR87_RS10270	0.22	+0.9
2,175,668	-		ABZR87_RS10270	0.22	-2.4
2,175,668	-		ABZR87_RS10270	0.22	+0.5
2,175,724	+		ABZR87_RS10270	0.26	+0.0
2,175,724	+		ABZR87_RS10270	0.26	+0.1
2,175,724	+		ABZR87_RS10270	0.26	-0.2
2,175,724	+		ABZR87_RS10270	0.26	-0.9
2,175,724	+		ABZR87_RS10270	0.26	+0.1
2,175,724	+		ABZR87_RS10270	0.26	+0.2
2,175,724	+		ABZR87_RS10270	0.26	-0.7
2,175,725	-		ABZR87_RS10270	0.26	+0.4
2,175,725	-		ABZR87_RS10270	0.26	+0.2
2,175,725	-		ABZR87_RS10270	0.26	-0.6
2,175,725	-		ABZR87_RS10270	0.26	+0.5
2,175,725	-		ABZR87_RS10270	0.26	-0.0
2,175,725	-		ABZR87_RS10270	0.26	+0.8
2,175,756	-		ABZR87_RS10270	0.27	+0.1
2,175,778	+		ABZR87_RS10270	0.29	-1.6
2,175,778	+		ABZR87_RS10270	0.29	+1.4
2,175,779	-		ABZR87_RS10270	0.29	-0.2
2,175,779	-		ABZR87_RS10270	0.29	+2.1
2,175,779	-		ABZR87_RS10270	0.29	+0.6
2,175,793	-		ABZR87_RS10270	0.30	+0.3
2,175,938	-		ABZR87_RS10270	0.38	+0.8
2,175,950	+		ABZR87_RS10270	0.39	-1.5
2,175,950	+		ABZR87_RS10270	0.39	+0.7
2,175,950	+		ABZR87_RS10270	0.39	-1.3
2,175,950	+		ABZR87_RS10270	0.39	-0.3
2,175,950	+		ABZR87_RS10270	0.39	-0.0
2,175,950	+		ABZR87_RS10270	0.39	-0.1
2,175,950	+		ABZR87_RS10270	0.39	-0.8
2,175,951	-		ABZR87_RS10270	0.39	+0.7
2,175,951	-		ABZR87_RS10270	0.39	+1.5
2,175,951	-		ABZR87_RS10270	0.39	-0.1
2,175,951	-		ABZR87_RS10270	0.39	+0.3
2,175,951	-		ABZR87_RS10270	0.39	+2.2
2,176,012	+		ABZR87_RS10270	0.43	-0.8
2,176,012	+		ABZR87_RS10270	0.43	+0.4
2,176,012	+		ABZR87_RS10270	0.43	-0.2
2,176,012	+		ABZR87_RS10270	0.43	+0.2
2,176,012	+		ABZR87_RS10270	0.43	-0.6
2,176,013	-		ABZR87_RS10270	0.43	+1.0
2,176,034	-		ABZR87_RS10270	0.44	-0.2
2,176,100	-		ABZR87_RS10270	0.48	-0.5
2,176,100	-		ABZR87_RS10270	0.48	-0.3
2,176,186	+		ABZR87_RS10270	0.53	+0.2
2,176,186	+		ABZR87_RS10270	0.53	-0.9
2,176,187	-		ABZR87_RS10270	0.53	-0.9
2,176,234	+		ABZR87_RS10270	0.56	+0.9
2,176,235	-		ABZR87_RS10270	0.56	+0.2
2,176,255	+		ABZR87_RS10270	0.57	+0.2
2,176,255	+		ABZR87_RS10270	0.57	-0.0
2,176,255	+		ABZR87_RS10270	0.57	+0.2
2,176,255	+		ABZR87_RS10270	0.57	+0.5
2,176,255	+		ABZR87_RS10270	0.57	-1.6
2,176,256	-		ABZR87_RS10270	0.57	-1.8
2,176,256	-		ABZR87_RS10270	0.57	-0.5
2,176,397	+		ABZR87_RS10270	0.66	-0.1
2,176,397	+		ABZR87_RS10270	0.66	-1.8
2,176,397	+		ABZR87_RS10270	0.66	-0.5
2,176,398	-		ABZR87_RS10270	0.66	-0.2
2,176,429	+		ABZR87_RS10270	0.67	+0.5
2,176,463	+		ABZR87_RS10270	0.69	-0.6
2,176,464	-		ABZR87_RS10270	0.70	+2.2
2,176,464	-		ABZR87_RS10270	0.70	+2.2
2,176,464	-		ABZR87_RS10270	0.70	-0.4
2,176,654	+		ABZR87_RS10270	0.81	+0.8
2,176,655	-		ABZR87_RS10270	0.81	+0.0
2,176,700	+		ABZR87_RS10270	0.84	-0.4
2,176,701	-		ABZR87_RS10270	0.84	-0.8
2,176,701	-		ABZR87_RS10270	0.84	-0.2
2,176,701	-		ABZR87_RS10270	0.84	+0.0
2,176,733	+		ABZR87_RS10270	0.86	+0.5
2,176,734	-		ABZR87_RS10270	0.86	-0.4
2,176,734	-		ABZR87_RS10270	0.86	-0.2
2,176,740	+		ABZR87_RS10270	0.86	-0.5
2,176,755	+		ABZR87_RS10270	0.87	+2.7
2,176,756	-		ABZR87_RS10270	0.87	-0.4
2,176,756	-		ABZR87_RS10270	0.87	-0.2
2,176,756	-		ABZR87_RS10270	0.87	+0.5
2,176,756	-		ABZR87_RS10270	0.87	-1.1
2,176,771	+		ABZR87_RS10270	0.88	+2.2
2,176,772	-		ABZR87_RS10270	0.88	+0.6
2,176,772	-		ABZR87_RS10270	0.88	-1.3
2,176,772	-		ABZR87_RS10270	0.88	-0.3
2,176,935	+				-2.6
2,176,936	-				-0.1
2,176,936	-				-0.4
2,177,046	-				-0.4
2,177,275	+				+0.4
2,177,275	+				-0.0
2,177,321	+				-0.1
2,177,321	+				+0.8
2,177,321	+				-0.1
2,177,321	+				-0.0
2,177,322	-				-2.9
2,177,322	-				-1.9
2,177,588	-		ABZR87_RS10275	0.86	-0.4
2,177,592	+		ABZR87_RS10275	0.87	-2.7
2,177,593	-		ABZR87_RS10275	0.88	-0.9
2,177,603	-				-0.3
2,177,603	-				-0.2
2,177,679	-				-1.3
2,177,687	+				+0.6
2,177,718	+				+0.7
2,177,718	+				+0.1
2,177,718	+				-0.2
2,177,719	-				-0.1
2,177,719	-				+0.4
2,177,800	+				-2.3
2,177,800	+				+0.4
2,177,800	+				+0.3
2,177,801	-				+0.7
2,177,841	+				+0.7
2,177,841	+				-0.2
2,177,842	-				+0.4
2,177,842	-				-1.3
2,177,842	-				+0.2
2,177,842	-				-0.8
2,177,873	+				-1.8
2,177,873	+				-1.0
2,177,874	-				-1.1
2,177,874	-				-0.2
2,177,874	-				+0.2
2,177,874	-				+0.0
2,177,874	-				+0.4
2,177,874	-				+0.4
2,177,874	-				-1.0
2,177,877	+				+1.1
2,177,877	+				+1.6
2,177,877	+				-0.9
2,177,877	+				-0.6
2,177,877	+				-0.1
2,177,877	+				-0.5
2,177,877	+				-0.9
2,177,877	+				-0.0
2,177,877	+				-2.7
2,177,877	+				-0.9
2,177,877	+				+0.1
2,177,878	-				-0.3
2,177,878	-				-1.1
2,177,878	-				+1.7
2,177,878	-				+0.3
2,177,878	-				+0.6
2,177,880	+				+0.0
2,177,880	+				+0.5
2,177,926	+				+2.1
2,177,927	-				+1.8
2,177,927	-				-0.8