Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10050

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10040 and ABZR87_RS10045 are separated by 89 nucleotidesABZR87_RS10045 and ABZR87_RS10050 are separated by 135 nucleotidesABZR87_RS10050 and ABZR87_RS10055 are separated by 19 nucleotides ABZR87_RS10040: ABZR87_RS10040 - nicotinate phosphoribosyltransferase, at 2,131,881 to 2,133,050 _RS10040 ABZR87_RS10045: ABZR87_RS10045 - lactate utilization protein C, at 2,133,140 to 2,133,859 _RS10045 ABZR87_RS10050: ABZR87_RS10050 - sodium:proton antiporter, at 2,133,995 to 2,135,404 _RS10050 ABZR87_RS10055: ABZR87_RS10055 - D-glycerate dehydrogenase, at 2,135,424 to 2,136,425 _RS10055 Position (kb) 2133 2134 2135 2136Strain fitness (log2 ratio) -2 -1 0 1at 2133.012 kb on + strandat 2133.021 kb on + strandat 2133.021 kb on + strandat 2133.022 kb on - strandat 2133.022 kb on - strandat 2133.049 kb on - strandat 2133.049 kb on - strandat 2133.070 kb on - strandat 2133.115 kb on - strandat 2133.276 kb on - strand, within ABZR87_RS10045at 2133.417 kb on - strand, within ABZR87_RS10045at 2133.906 kb on - strandat 2133.906 kb on - strandat 2133.906 kb on - strandat 2133.906 kb on - strandat 2133.930 kb on + strandat 2135.423 kb on + strandat 2135.423 kb on + strandat 2135.424 kb on - strandat 2135.636 kb on - strand, within ABZR87_RS10055at 2135.829 kb on + strand, within ABZR87_RS10055at 2135.829 kb on + strand, within ABZR87_RS10055at 2135.856 kb on + strand, within ABZR87_RS10055at 2135.856 kb on + strand, within ABZR87_RS10055at 2135.856 kb on + strand, within ABZR87_RS10055at 2135.856 kb on + strand, within ABZR87_RS10055at 2135.856 kb on + strand, within ABZR87_RS10055at 2135.857 kb on - strand, within ABZR87_RS10055at 2135.857 kb on - strand, within ABZR87_RS10055at 2135.943 kb on + strand, within ABZR87_RS10055at 2135.944 kb on - strand, within ABZR87_RS10055at 2135.997 kb on + strand, within ABZR87_RS10055at 2135.997 kb on + strand, within ABZR87_RS10055at 2135.997 kb on + strand, within ABZR87_RS10055at 2135.997 kb on + strand, within ABZR87_RS10055at 2135.998 kb on - strand, within ABZR87_RS10055at 2135.998 kb on - strand, within ABZR87_RS10055at 2135.998 kb on - strand, within ABZR87_RS10055at 2136.213 kb on + strand, within ABZR87_RS10055at 2136.214 kb on - strand, within ABZR87_RS10055at 2136.214 kb on - strand, within ABZR87_RS10055

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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2,133,012 + +0.1
2,133,021 + -0.4
2,133,021 + -0.2
2,133,022 - +1.5
2,133,022 - -0.7
2,133,049 - -2.3
2,133,049 - +0.0
2,133,070 - +0.2
2,133,115 - -0.1
2,133,276 - ABZR87_RS10045 0.19 -0.6
2,133,417 - ABZR87_RS10045 0.38 -0.1
2,133,906 - +1.1
2,133,906 - +0.1
2,133,906 - +0.1
2,133,906 - -1.0
2,133,930 + +0.4
2,135,423 + -1.6
2,135,423 + -0.8
2,135,424 - -1.5
2,135,636 - ABZR87_RS10055 0.21 -2.1
2,135,829 + ABZR87_RS10055 0.40 +0.2
2,135,829 + ABZR87_RS10055 0.40 +0.6
2,135,856 + ABZR87_RS10055 0.43 +0.5
2,135,856 + ABZR87_RS10055 0.43 -0.5
2,135,856 + ABZR87_RS10055 0.43 -0.7
2,135,856 + ABZR87_RS10055 0.43 +0.5
2,135,856 + ABZR87_RS10055 0.43 -1.3
2,135,857 - ABZR87_RS10055 0.43 +0.5
2,135,857 - ABZR87_RS10055 0.43 -0.1
2,135,943 + ABZR87_RS10055 0.52 +0.3
2,135,944 - ABZR87_RS10055 0.52 -0.2
2,135,997 + ABZR87_RS10055 0.57 -0.2
2,135,997 + ABZR87_RS10055 0.57 +0.4
2,135,997 + ABZR87_RS10055 0.57 -1.2
2,135,997 + ABZR87_RS10055 0.57 -0.9
2,135,998 - ABZR87_RS10055 0.57 -1.2
2,135,998 - ABZR87_RS10055 0.57 -2.1
2,135,998 - ABZR87_RS10055 0.57 +0.3
2,136,213 + ABZR87_RS10055 0.79 +0.1
2,136,214 - ABZR87_RS10055 0.79 +0.2
2,136,214 - ABZR87_RS10055 0.79 +0.3

Or see this region's nucleotide sequence