Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07785

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS07780 and ABZR87_RS07785 are separated by 52 nucleotidesABZR87_RS07785 and ABZR87_RS07790 are separated by 90 nucleotides ABZR87_RS07780: ABZR87_RS07780 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 1,650,432 to 1,651,802 _RS07780 ABZR87_RS07785: ABZR87_RS07785 - hypothetical protein, at 1,651,855 to 1,652,268 _RS07785 ABZR87_RS07790: ABZR87_RS07790 - NAD(P)/FAD-dependent oxidoreductase, at 1,652,359 to 1,653,357 _RS07790 Position (kb) 1651 1652 1653Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1650.946 kb on + strand, within ABZR87_RS07780at 1650.947 kb on - strand, within ABZR87_RS07780at 1650.947 kb on - strand, within ABZR87_RS07780at 1651.049 kb on - strand, within ABZR87_RS07780at 1651.049 kb on - strand, within ABZR87_RS07780at 1651.049 kb on - strand, within ABZR87_RS07780at 1651.049 kb on - strand, within ABZR87_RS07780at 1651.096 kb on + strand, within ABZR87_RS07780at 1651.132 kb on + strand, within ABZR87_RS07780at 1651.133 kb on - strand, within ABZR87_RS07780at 1651.133 kb on - strand, within ABZR87_RS07780at 1651.133 kb on - strand, within ABZR87_RS07780at 1651.189 kb on + strand, within ABZR87_RS07780at 1651.189 kb on + strand, within ABZR87_RS07780at 1651.189 kb on + strand, within ABZR87_RS07780at 1651.189 kb on + strand, within ABZR87_RS07780at 1651.189 kb on + strand, within ABZR87_RS07780at 1651.190 kb on - strand, within ABZR87_RS07780at 1651.190 kb on - strand, within ABZR87_RS07780at 1651.190 kb on - strand, within ABZR87_RS07780at 1651.190 kb on - strand, within ABZR87_RS07780at 1651.190 kb on - strand, within ABZR87_RS07780at 1651.319 kb on - strand, within ABZR87_RS07780at 1651.327 kb on + strand, within ABZR87_RS07780at 1651.327 kb on + strand, within ABZR87_RS07780at 1651.513 kb on + strand, within ABZR87_RS07780at 1651.513 kb on + strand, within ABZR87_RS07780at 1651.514 kb on - strand, within ABZR87_RS07780at 1651.514 kb on - strand, within ABZR87_RS07780at 1651.514 kb on - strand, within ABZR87_RS07780at 1651.777 kb on + strandat 1651.857 kb on - strandat 1651.857 kb on - strandat 1651.857 kb on - strandat 1651.904 kb on + strand, within ABZR87_RS07785at 1651.904 kb on + strand, within ABZR87_RS07785at 1651.904 kb on + strand, within ABZR87_RS07785at 1651.904 kb on + strand, within ABZR87_RS07785at 1651.905 kb on - strand, within ABZR87_RS07785at 1651.905 kb on - strand, within ABZR87_RS07785at 1651.946 kb on + strand, within ABZR87_RS07785at 1651.946 kb on + strand, within ABZR87_RS07785at 1651.947 kb on - strand, within ABZR87_RS07785at 1652.240 kb on - strandat 1652.339 kb on + strandat 1652.340 kb on - strandat 1652.340 kb on - strandat 1652.340 kb on - strandat 1652.340 kb on - strandat 1652.340 kb on - strandat 1652.360 kb on + strandat 1652.360 kb on + strandat 1652.360 kb on + strandat 1652.361 kb on - strandat 1652.361 kb on - strandat 1652.362 kb on + strandat 1652.742 kb on - strand, within ABZR87_RS07790at 1652.751 kb on + strand, within ABZR87_RS07790at 1652.751 kb on + strand, within ABZR87_RS07790at 1652.751 kb on + strand, within ABZR87_RS07790at 1652.751 kb on + strand, within ABZR87_RS07790at 1652.752 kb on - strand, within ABZR87_RS07790at 1652.752 kb on - strand, within ABZR87_RS07790at 1652.752 kb on - strand, within ABZR87_RS07790at 1652.795 kb on + strand, within ABZR87_RS07790at 1652.795 kb on + strand, within ABZR87_RS07790at 1652.795 kb on + strand, within ABZR87_RS07790at 1653.035 kb on + strand, within ABZR87_RS07790at 1653.036 kb on - strand, within ABZR87_RS07790at 1653.036 kb on - strand, within ABZR87_RS07790at 1653.036 kb on - strand, within ABZR87_RS07790at 1653.220 kb on + strand, within ABZR87_RS07790at 1653.220 kb on + strand, within ABZR87_RS07790at 1653.221 kb on - strand, within ABZR87_RS07790at 1653.221 kb on - strand, within ABZR87_RS07790at 1653.226 kb on - strand, within ABZR87_RS07790at 1653.226 kb on - strand, within ABZR87_RS07790at 1653.226 kb on - strand, within ABZR87_RS07790at 1653.263 kb on + strandat 1653.263 kb on + strandat 1653.263 kb on + strandat 1653.264 kb on - strandat 1653.264 kb on - strandat 1653.264 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
1,650,946 + ABZR87_RS07780 0.37 +0.4
1,650,947 - ABZR87_RS07780 0.38 +0.1
1,650,947 - ABZR87_RS07780 0.38 +0.1
1,651,049 - ABZR87_RS07780 0.45 +0.4
1,651,049 - ABZR87_RS07780 0.45 -0.1
1,651,049 - ABZR87_RS07780 0.45 -2.5
1,651,049 - ABZR87_RS07780 0.45 -0.5
1,651,096 + ABZR87_RS07780 0.48 -1.0
1,651,132 + ABZR87_RS07780 0.51 -0.4
1,651,133 - ABZR87_RS07780 0.51 +0.4
1,651,133 - ABZR87_RS07780 0.51 -0.5
1,651,133 - ABZR87_RS07780 0.51 -1.0
1,651,189 + ABZR87_RS07780 0.55 +0.3
1,651,189 + ABZR87_RS07780 0.55 +0.4
1,651,189 + ABZR87_RS07780 0.55 -0.7
1,651,189 + ABZR87_RS07780 0.55 -1.1
1,651,189 + ABZR87_RS07780 0.55 +0.4
1,651,190 - ABZR87_RS07780 0.55 +0.8
1,651,190 - ABZR87_RS07780 0.55 -0.3
1,651,190 - ABZR87_RS07780 0.55 -0.8
1,651,190 - ABZR87_RS07780 0.55 +0.0
1,651,190 - ABZR87_RS07780 0.55 +0.9
1,651,319 - ABZR87_RS07780 0.65 +0.1
1,651,327 + ABZR87_RS07780 0.65 -1.6
1,651,327 + ABZR87_RS07780 0.65 -1.1
1,651,513 + ABZR87_RS07780 0.79 +0.9
1,651,513 + ABZR87_RS07780 0.79 -0.6
1,651,514 - ABZR87_RS07780 0.79 -0.6
1,651,514 - ABZR87_RS07780 0.79 -0.2
1,651,514 - ABZR87_RS07780 0.79 +0.8
1,651,777 + -1.6
1,651,857 - -1.5
1,651,857 - +0.4
1,651,857 - -1.3
1,651,904 + ABZR87_RS07785 0.12 -0.8
1,651,904 + ABZR87_RS07785 0.12 +0.9
1,651,904 + ABZR87_RS07785 0.12 -0.6
1,651,904 + ABZR87_RS07785 0.12 +0.6
1,651,905 - ABZR87_RS07785 0.12 +0.1
1,651,905 - ABZR87_RS07785 0.12 +0.6
1,651,946 + ABZR87_RS07785 0.22 +1.8
1,651,946 + ABZR87_RS07785 0.22 +1.4
1,651,947 - ABZR87_RS07785 0.22 +1.6
1,652,240 - +0.3
1,652,339 + +1.2
1,652,340 - -0.8
1,652,340 - -0.3
1,652,340 - -1.7
1,652,340 - +0.4
1,652,340 - -0.9
1,652,360 + +0.8
1,652,360 + +0.8
1,652,360 + -0.6
1,652,361 - +0.7
1,652,361 - +0.5
1,652,362 + +1.5
1,652,742 - ABZR87_RS07790 0.38 +0.4
1,652,751 + ABZR87_RS07790 0.39 -0.6
1,652,751 + ABZR87_RS07790 0.39 +0.0
1,652,751 + ABZR87_RS07790 0.39 -0.4
1,652,751 + ABZR87_RS07790 0.39 -0.4
1,652,752 - ABZR87_RS07790 0.39 +1.8
1,652,752 - ABZR87_RS07790 0.39 +0.6
1,652,752 - ABZR87_RS07790 0.39 -3.0
1,652,795 + ABZR87_RS07790 0.44 -1.6
1,652,795 + ABZR87_RS07790 0.44 +0.2
1,652,795 + ABZR87_RS07790 0.44 -1.7
1,653,035 + ABZR87_RS07790 0.68 -0.6
1,653,036 - ABZR87_RS07790 0.68 +0.1
1,653,036 - ABZR87_RS07790 0.68 -0.2
1,653,036 - ABZR87_RS07790 0.68 -0.7
1,653,220 + ABZR87_RS07790 0.86 -0.5
1,653,220 + ABZR87_RS07790 0.86 -0.1
1,653,221 - ABZR87_RS07790 0.86 -0.7
1,653,221 - ABZR87_RS07790 0.86 -0.5
1,653,226 - ABZR87_RS07790 0.87 -0.4
1,653,226 - ABZR87_RS07790 0.87 +0.2
1,653,226 - ABZR87_RS07790 0.87 -1.2
1,653,263 + -2.9
1,653,263 + -1.1
1,653,263 + -0.1
1,653,264 - -0.3
1,653,264 - +1.4
1,653,264 - -0.1

Or see this region's nucleotide sequence