Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07740

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS07730 and ABZR87_RS07735 are separated by 11 nucleotidesABZR87_RS07735 and ABZR87_RS07740 are separated by 31 nucleotidesABZR87_RS07740 and ABZR87_RS07745 are separated by 86 nucleotidesABZR87_RS07745 and ABZR87_RS07750 overlap by 4 nucleotides ABZR87_RS07730: ABZR87_RS07730 - lysophospholipid acyltransferase family protein, at 1,638,689 to 1,639,441 _RS07730 ABZR87_RS07735: ABZR87_RS07735 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 1,639,453 to 1,640,031 _RS07735 ABZR87_RS07740: ABZR87_RS07740 - glycine--tRNA ligase subunit beta, at 1,640,063 to 1,642,156 _RS07740 ABZR87_RS07745: ABZR87_RS07745 - hypothetical protein, at 1,642,243 to 1,642,902 _RS07745 ABZR87_RS07750: ABZR87_RS07750 - glycine--tRNA ligase subunit alpha, at 1,642,899 to 1,643,885 _RS07750 Position (kb) 1640 1641 1642 1643Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1639.109 kb on + strand, within ABZR87_RS07730at 1639.109 kb on + strand, within ABZR87_RS07730at 1639.113 kb on + strand, within ABZR87_RS07730at 1639.113 kb on + strand, within ABZR87_RS07730at 1639.113 kb on + strand, within ABZR87_RS07730at 1639.113 kb on + strand, within ABZR87_RS07730at 1639.114 kb on - strand, within ABZR87_RS07730at 1639.133 kb on + strand, within ABZR87_RS07730at 1639.134 kb on - strand, within ABZR87_RS07730at 1639.260 kb on + strand, within ABZR87_RS07730at 1639.260 kb on + strand, within ABZR87_RS07730at 1639.260 kb on + strand, within ABZR87_RS07730at 1639.261 kb on - strand, within ABZR87_RS07730at 1639.417 kb on - strandat 1639.589 kb on - strand, within ABZR87_RS07735at 1639.785 kb on - strand, within ABZR87_RS07735at 1639.802 kb on + strand, within ABZR87_RS07735at 1639.802 kb on + strand, within ABZR87_RS07735at 1639.802 kb on + strand, within ABZR87_RS07735at 1639.802 kb on + strand, within ABZR87_RS07735at 1639.803 kb on - strand, within ABZR87_RS07735at 1639.803 kb on - strand, within ABZR87_RS07735at 1639.803 kb on - strand, within ABZR87_RS07735at 1642.219 kb on - strandat 1642.434 kb on - strand, within ABZR87_RS07745at 1642.434 kb on - strand, within ABZR87_RS07745at 1642.434 kb on - strand, within ABZR87_RS07745at 1642.434 kb on - strand, within ABZR87_RS07745at 1642.434 kb on - strand, within ABZR87_RS07745at 1642.584 kb on - strand, within ABZR87_RS07745at 1642.584 kb on - strand, within ABZR87_RS07745at 1642.584 kb on - strand, within ABZR87_RS07745at 1642.584 kb on - strand, within ABZR87_RS07745at 1642.584 kb on - strand, within ABZR87_RS07745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
1,639,109 + ABZR87_RS07730 0.56 +1.2
1,639,109 + ABZR87_RS07730 0.56 +0.2
1,639,113 + ABZR87_RS07730 0.56 -0.7
1,639,113 + ABZR87_RS07730 0.56 +0.2
1,639,113 + ABZR87_RS07730 0.56 -0.7
1,639,113 + ABZR87_RS07730 0.56 +0.8
1,639,114 - ABZR87_RS07730 0.56 -0.9
1,639,133 + ABZR87_RS07730 0.59 -0.7
1,639,134 - ABZR87_RS07730 0.59 -0.0
1,639,260 + ABZR87_RS07730 0.76 -0.6
1,639,260 + ABZR87_RS07730 0.76 -0.0
1,639,260 + ABZR87_RS07730 0.76 +0.2
1,639,261 - ABZR87_RS07730 0.76 -0.0
1,639,417 - +0.4
1,639,589 - ABZR87_RS07735 0.23 -3.9
1,639,785 - ABZR87_RS07735 0.57 -2.1
1,639,802 + ABZR87_RS07735 0.60 -1.2
1,639,802 + ABZR87_RS07735 0.60 -3.2
1,639,802 + ABZR87_RS07735 0.60 -0.7
1,639,802 + ABZR87_RS07735 0.60 -2.8
1,639,803 - ABZR87_RS07735 0.60 -3.3
1,639,803 - ABZR87_RS07735 0.60 -1.2
1,639,803 - ABZR87_RS07735 0.60 -3.3
1,642,219 - -0.8
1,642,434 - ABZR87_RS07745 0.29 -0.8
1,642,434 - ABZR87_RS07745 0.29 -1.2
1,642,434 - ABZR87_RS07745 0.29 -0.4
1,642,434 - ABZR87_RS07745 0.29 +0.4
1,642,434 - ABZR87_RS07745 0.29 +1.7
1,642,584 - ABZR87_RS07745 0.52 -0.3
1,642,584 - ABZR87_RS07745 0.52 +0.3
1,642,584 - ABZR87_RS07745 0.52 +0.1
1,642,584 - ABZR87_RS07745 0.52 -0.3
1,642,584 - ABZR87_RS07745 0.52 -1.1

Or see this region's nucleotide sequence