Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07495

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07490 and ABZR87_RS07495 are separated by 26 nucleotidesABZR87_RS07495 and ABZR87_RS07500 are separated by 62 nucleotidesABZR87_RS07500 and ABZR87_RS07505 are separated by 90 nucleotides ABZR87_RS07490: ABZR87_RS07490 - DegV family protein, at 1,591,065 to 1,592,030 _RS07490 ABZR87_RS07495: ABZR87_RS07495 - enoyl-CoA hydratase, at 1,592,057 to 1,592,821 _RS07495 ABZR87_RS07500: ABZR87_RS07500 - acyl-CoA thioesterase, at 1,592,884 to 1,593,321 _RS07500 ABZR87_RS07505: ABZR87_RS07505 - ABC transporter ATP-binding protein/permease, at 1,593,412 to 1,595,253 _RS07505 Position (kb) 1592 1593Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1591.077 kb on - strandat 1591.093 kb on + strandat 1591.094 kb on - strandat 1591.094 kb on - strandat 1591.236 kb on + strand, within ABZR87_RS07490at 1591.236 kb on + strand, within ABZR87_RS07490at 1591.237 kb on - strand, within ABZR87_RS07490at 1591.260 kb on + strand, within ABZR87_RS07490at 1591.260 kb on + strand, within ABZR87_RS07490at 1591.260 kb on + strand, within ABZR87_RS07490at 1591.261 kb on - strand, within ABZR87_RS07490at 1591.261 kb on - strand, within ABZR87_RS07490at 1591.261 kb on - strand, within ABZR87_RS07490at 1591.377 kb on + strand, within ABZR87_RS07490at 1591.378 kb on - strand, within ABZR87_RS07490at 1591.606 kb on - strand, within ABZR87_RS07490at 1591.606 kb on - strand, within ABZR87_RS07490at 1591.629 kb on + strand, within ABZR87_RS07490at 1591.629 kb on + strand, within ABZR87_RS07490at 1591.629 kb on + strand, within ABZR87_RS07490at 1591.629 kb on + strand, within ABZR87_RS07490at 1591.629 kb on + strand, within ABZR87_RS07490at 1591.629 kb on + strand, within ABZR87_RS07490at 1591.630 kb on - strand, within ABZR87_RS07490at 1591.630 kb on - strand, within ABZR87_RS07490at 1591.630 kb on - strand, within ABZR87_RS07490at 1591.630 kb on - strand, within ABZR87_RS07490at 1591.630 kb on - strand, within ABZR87_RS07490at 1591.635 kb on + strand, within ABZR87_RS07490at 1591.635 kb on + strand, within ABZR87_RS07490at 1591.635 kb on + strand, within ABZR87_RS07490at 1591.635 kb on + strand, within ABZR87_RS07490at 1591.636 kb on - strand, within ABZR87_RS07490at 1591.683 kb on + strand, within ABZR87_RS07490at 1591.683 kb on + strand, within ABZR87_RS07490at 1591.684 kb on - strand, within ABZR87_RS07490at 1591.684 kb on - strand, within ABZR87_RS07490at 1591.684 kb on - strand, within ABZR87_RS07490at 1591.724 kb on + strand, within ABZR87_RS07490at 1591.724 kb on + strand, within ABZR87_RS07490at 1591.724 kb on + strand, within ABZR87_RS07490at 1591.724 kb on + strand, within ABZR87_RS07490at 1591.725 kb on - strand, within ABZR87_RS07490at 1591.725 kb on - strand, within ABZR87_RS07490at 1591.725 kb on - strand, within ABZR87_RS07490at 1591.725 kb on - strand, within ABZR87_RS07490at 1591.799 kb on + strand, within ABZR87_RS07490at 1591.799 kb on + strand, within ABZR87_RS07490at 1591.854 kb on + strand, within ABZR87_RS07490at 1591.855 kb on - strand, within ABZR87_RS07490at 1592.001 kb on + strandat 1592.001 kb on + strandat 1592.002 kb on - strandat 1592.005 kb on + strandat 1592.005 kb on + strandat 1592.005 kb on + strandat 1592.005 kb on + strandat 1592.005 kb on + strandat 1592.005 kb on + strandat 1592.006 kb on - strandat 1592.006 kb on - strandat 1592.006 kb on - strandat 1592.006 kb on - strandat 1592.006 kb on - strandat 1592.006 kb on - strandat 1592.068 kb on + strandat 1592.068 kb on + strandat 1592.144 kb on + strand, within ABZR87_RS07495at 1592.145 kb on - strand, within ABZR87_RS07495at 1592.145 kb on - strand, within ABZR87_RS07495at 1592.145 kb on - strand, within ABZR87_RS07495at 1592.145 kb on - strand, within ABZR87_RS07495at 1592.145 kb on - strand, within ABZR87_RS07495at 1592.226 kb on + strand, within ABZR87_RS07495at 1592.226 kb on + strand, within ABZR87_RS07495at 1592.226 kb on + strand, within ABZR87_RS07495at 1592.227 kb on - strand, within ABZR87_RS07495at 1592.367 kb on + strand, within ABZR87_RS07495at 1592.367 kb on + strand, within ABZR87_RS07495at 1592.367 kb on + strand, within ABZR87_RS07495at 1592.368 kb on - strand, within ABZR87_RS07495at 1592.368 kb on - strand, within ABZR87_RS07495at 1592.368 kb on - strand, within ABZR87_RS07495at 1592.368 kb on - strand, within ABZR87_RS07495at 1592.402 kb on + strand, within ABZR87_RS07495at 1592.402 kb on + strand, within ABZR87_RS07495at 1592.402 kb on + strand, within ABZR87_RS07495at 1592.403 kb on - strand, within ABZR87_RS07495at 1592.690 kb on - strand, within ABZR87_RS07495at 1592.933 kb on + strand, within ABZR87_RS07500at 1592.933 kb on + strand, within ABZR87_RS07500at 1592.933 kb on + strand, within ABZR87_RS07500at 1592.934 kb on - strand, within ABZR87_RS07500at 1592.934 kb on - strand, within ABZR87_RS07500at 1592.934 kb on - strand, within ABZR87_RS07500at 1592.999 kb on + strand, within ABZR87_RS07500at 1592.999 kb on + strand, within ABZR87_RS07500at 1592.999 kb on + strand, within ABZR87_RS07500at 1592.999 kb on + strand, within ABZR87_RS07500at 1592.999 kb on + strand, within ABZR87_RS07500at 1593.000 kb on - strand, within ABZR87_RS07500at 1593.000 kb on - strand, within ABZR87_RS07500at 1593.000 kb on - strand, within ABZR87_RS07500at 1593.027 kb on + strand, within ABZR87_RS07500at 1593.028 kb on - strand, within ABZR87_RS07500at 1593.028 kb on - strand, within ABZR87_RS07500at 1593.054 kb on - strand, within ABZR87_RS07500at 1593.077 kb on + strand, within ABZR87_RS07500at 1593.077 kb on + strand, within ABZR87_RS07500at 1593.078 kb on - strand, within ABZR87_RS07500at 1593.078 kb on - strand, within ABZR87_RS07500at 1593.078 kb on - strand, within ABZR87_RS07500at 1593.078 kb on - strand, within ABZR87_RS07500at 1593.078 kb on - strand, within ABZR87_RS07500at 1593.078 kb on - strand, within ABZR87_RS07500at 1593.078 kb on - strand, within ABZR87_RS07500at 1593.078 kb on - strand, within ABZR87_RS07500at 1593.383 kb on - strandat 1593.400 kb on - strandat 1593.497 kb on - strandat 1593.508 kb on + strandat 1593.508 kb on + strandat 1593.509 kb on - strandat 1593.509 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,591,077 - +0.0
1,591,093 + +1.0
1,591,094 - -0.6
1,591,094 - -0.6
1,591,236 + ABZR87_RS07490 0.18 +0.5
1,591,236 + ABZR87_RS07490 0.18 -2.6
1,591,237 - ABZR87_RS07490 0.18 +0.6
1,591,260 + ABZR87_RS07490 0.20 -0.3
1,591,260 + ABZR87_RS07490 0.20 +0.3
1,591,260 + ABZR87_RS07490 0.20 -0.0
1,591,261 - ABZR87_RS07490 0.20 +0.1
1,591,261 - ABZR87_RS07490 0.20 +0.1
1,591,261 - ABZR87_RS07490 0.20 +0.2
1,591,377 + ABZR87_RS07490 0.32 +0.9
1,591,378 - ABZR87_RS07490 0.32 +0.4
1,591,606 - ABZR87_RS07490 0.56 +0.9
1,591,606 - ABZR87_RS07490 0.56 -0.8
1,591,629 + ABZR87_RS07490 0.58 +0.2
1,591,629 + ABZR87_RS07490 0.58 +0.7
1,591,629 + ABZR87_RS07490 0.58 +0.2
1,591,629 + ABZR87_RS07490 0.58 +0.6
1,591,629 + ABZR87_RS07490 0.58 +0.5
1,591,629 + ABZR87_RS07490 0.58 -1.5
1,591,630 - ABZR87_RS07490 0.58 -2.6
1,591,630 - ABZR87_RS07490 0.58 -1.4
1,591,630 - ABZR87_RS07490 0.58 -1.0
1,591,630 - ABZR87_RS07490 0.58 -0.0
1,591,630 - ABZR87_RS07490 0.58 -0.5
1,591,635 + ABZR87_RS07490 0.59 +0.2
1,591,635 + ABZR87_RS07490 0.59 -0.8
1,591,635 + ABZR87_RS07490 0.59 -0.1
1,591,635 + ABZR87_RS07490 0.59 +0.3
1,591,636 - ABZR87_RS07490 0.59 +1.8
1,591,683 + ABZR87_RS07490 0.64 +0.3
1,591,683 + ABZR87_RS07490 0.64 +1.9
1,591,684 - ABZR87_RS07490 0.64 +0.6
1,591,684 - ABZR87_RS07490 0.64 -0.0
1,591,684 - ABZR87_RS07490 0.64 +2.9
1,591,724 + ABZR87_RS07490 0.68 +3.0
1,591,724 + ABZR87_RS07490 0.68 +0.2
1,591,724 + ABZR87_RS07490 0.68 +0.1
1,591,724 + ABZR87_RS07490 0.68 +0.7
1,591,725 - ABZR87_RS07490 0.68 +1.8
1,591,725 - ABZR87_RS07490 0.68 -0.7
1,591,725 - ABZR87_RS07490 0.68 -0.7
1,591,725 - ABZR87_RS07490 0.68 +0.0
1,591,799 + ABZR87_RS07490 0.76 -0.5
1,591,799 + ABZR87_RS07490 0.76 -0.2
1,591,854 + ABZR87_RS07490 0.82 +0.9
1,591,855 - ABZR87_RS07490 0.82 +0.2
1,592,001 + -0.7
1,592,001 + -0.7
1,592,002 - -0.4
1,592,005 + -1.1
1,592,005 + -0.9
1,592,005 + +0.8
1,592,005 + +1.3
1,592,005 + +0.3
1,592,005 + -0.3
1,592,006 - +2.7
1,592,006 - +0.2
1,592,006 - -0.4
1,592,006 - -0.6
1,592,006 - -0.8
1,592,006 - +0.0
1,592,068 + +1.9
1,592,068 + +0.3
1,592,144 + ABZR87_RS07495 0.11 +0.0
1,592,145 - ABZR87_RS07495 0.12 -0.3
1,592,145 - ABZR87_RS07495 0.12 -1.2
1,592,145 - ABZR87_RS07495 0.12 -2.1
1,592,145 - ABZR87_RS07495 0.12 -2.5
1,592,145 - ABZR87_RS07495 0.12 +0.1
1,592,226 + ABZR87_RS07495 0.22 -0.1
1,592,226 + ABZR87_RS07495 0.22 -1.7
1,592,226 + ABZR87_RS07495 0.22 -0.9
1,592,227 - ABZR87_RS07495 0.22 +0.1
1,592,367 + ABZR87_RS07495 0.41 +0.0
1,592,367 + ABZR87_RS07495 0.41 +0.4
1,592,367 + ABZR87_RS07495 0.41 +2.8
1,592,368 - ABZR87_RS07495 0.41 -0.9
1,592,368 - ABZR87_RS07495 0.41 +1.3
1,592,368 - ABZR87_RS07495 0.41 -0.5
1,592,368 - ABZR87_RS07495 0.41 +0.2
1,592,402 + ABZR87_RS07495 0.45 -1.7
1,592,402 + ABZR87_RS07495 0.45 +0.2
1,592,402 + ABZR87_RS07495 0.45 -1.3
1,592,403 - ABZR87_RS07495 0.45 -2.9
1,592,690 - ABZR87_RS07495 0.83 -0.8
1,592,933 + ABZR87_RS07500 0.11 +3.4
1,592,933 + ABZR87_RS07500 0.11 -1.1
1,592,933 + ABZR87_RS07500 0.11 +2.5
1,592,934 - ABZR87_RS07500 0.11 -1.0
1,592,934 - ABZR87_RS07500 0.11 -0.8
1,592,934 - ABZR87_RS07500 0.11 -1.2
1,592,999 + ABZR87_RS07500 0.26 -1.2
1,592,999 + ABZR87_RS07500 0.26 -0.3
1,592,999 + ABZR87_RS07500 0.26 +0.8
1,592,999 + ABZR87_RS07500 0.26 -0.9
1,592,999 + ABZR87_RS07500 0.26 -0.7
1,593,000 - ABZR87_RS07500 0.26 +1.6
1,593,000 - ABZR87_RS07500 0.26 +1.8
1,593,000 - ABZR87_RS07500 0.26 -0.4
1,593,027 + ABZR87_RS07500 0.33 +0.1
1,593,028 - ABZR87_RS07500 0.33 -2.0
1,593,028 - ABZR87_RS07500 0.33 -2.2
1,593,054 - ABZR87_RS07500 0.39 +0.1
1,593,077 + ABZR87_RS07500 0.44 +0.7
1,593,077 + ABZR87_RS07500 0.44 -0.0
1,593,078 - ABZR87_RS07500 0.44 -1.0
1,593,078 - ABZR87_RS07500 0.44 -0.4
1,593,078 - ABZR87_RS07500 0.44 -0.9
1,593,078 - ABZR87_RS07500 0.44 -1.7
1,593,078 - ABZR87_RS07500 0.44 +0.1
1,593,078 - ABZR87_RS07500 0.44 -0.2
1,593,078 - ABZR87_RS07500 0.44 -0.7
1,593,078 - ABZR87_RS07500 0.44 -0.9
1,593,383 - -1.2
1,593,400 - -1.3
1,593,497 - +1.2
1,593,508 + -0.1
1,593,508 + +0.3
1,593,509 - -0.3
1,593,509 - -1.0

Or see this region's nucleotide sequence