Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04580

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04575 and ABZR87_RS04580 are separated by 147 nucleotidesABZR87_RS04580 and ABZR87_RS04585 overlap by 23 nucleotides ABZR87_RS04575: ABZR87_RS04575 - ABC transporter substrate-binding protein, at 957,196 to 958,245 _RS04575 ABZR87_RS04580: ABZR87_RS04580 - response regulator, at 958,393 to 959,073 _RS04580 ABZR87_RS04585: ABZR87_RS04585 - sensor histidine kinase, at 959,051 to 960,526 _RS04585 Position (kb) 958 959 960Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 957.452 kb on + strand, within ABZR87_RS04575at 957.452 kb on + strand, within ABZR87_RS04575at 957.452 kb on + strand, within ABZR87_RS04575at 957.452 kb on + strand, within ABZR87_RS04575at 957.452 kb on + strand, within ABZR87_RS04575at 957.452 kb on + strand, within ABZR87_RS04575at 957.453 kb on - strand, within ABZR87_RS04575at 957.453 kb on - strand, within ABZR87_RS04575at 957.453 kb on - strand, within ABZR87_RS04575at 957.453 kb on - strand, within ABZR87_RS04575at 957.453 kb on - strand, within ABZR87_RS04575at 957.453 kb on - strand, within ABZR87_RS04575at 957.453 kb on - strand, within ABZR87_RS04575at 957.453 kb on - strand, within ABZR87_RS04575at 957.530 kb on + strand, within ABZR87_RS04575at 957.531 kb on - strand, within ABZR87_RS04575at 957.531 kb on - strand, within ABZR87_RS04575at 957.725 kb on + strand, within ABZR87_RS04575at 957.726 kb on - strand, within ABZR87_RS04575at 957.726 kb on - strand, within ABZR87_RS04575at 957.726 kb on - strand, within ABZR87_RS04575at 957.726 kb on - strand, within ABZR87_RS04575at 957.726 kb on - strand, within ABZR87_RS04575at 957.761 kb on + strand, within ABZR87_RS04575at 957.762 kb on - strand, within ABZR87_RS04575at 957.895 kb on + strand, within ABZR87_RS04575at 957.950 kb on + strand, within ABZR87_RS04575at 957.950 kb on + strand, within ABZR87_RS04575at 957.951 kb on - strand, within ABZR87_RS04575at 957.961 kb on + strand, within ABZR87_RS04575at 957.961 kb on + strand, within ABZR87_RS04575at 957.962 kb on - strand, within ABZR87_RS04575at 957.962 kb on - strand, within ABZR87_RS04575at 957.962 kb on - strand, within ABZR87_RS04575at 957.962 kb on - strand, within ABZR87_RS04575at 957.962 kb on - strand, within ABZR87_RS04575at 958.088 kb on + strand, within ABZR87_RS04575at 958.088 kb on + strand, within ABZR87_RS04575at 958.088 kb on + strand, within ABZR87_RS04575at 958.089 kb on - strand, within ABZR87_RS04575at 958.089 kb on - strand, within ABZR87_RS04575at 958.089 kb on - strand, within ABZR87_RS04575at 958.089 kb on - strand, within ABZR87_RS04575at 958.089 kb on - strand, within ABZR87_RS04575at 958.233 kb on + strandat 958.233 kb on + strandat 958.234 kb on - strandat 958.234 kb on - strandat 958.268 kb on + strandat 958.268 kb on + strandat 958.268 kb on + strandat 958.268 kb on + strandat 958.268 kb on + strandat 958.268 kb on + strandat 958.269 kb on - strandat 958.273 kb on - strandat 958.322 kb on - strandat 958.322 kb on - strandat 958.340 kb on + strandat 958.340 kb on + strandat 958.340 kb on + strandat 958.341 kb on - strandat 958.341 kb on - strandat 958.341 kb on - strandat 958.341 kb on - strandat 958.341 kb on - strandat 958.525 kb on + strand, within ABZR87_RS04580at 958.525 kb on + strand, within ABZR87_RS04580at 958.526 kb on - strand, within ABZR87_RS04580at 958.526 kb on - strand, within ABZR87_RS04580at 958.526 kb on - strand, within ABZR87_RS04580at 958.526 kb on - strand, within ABZR87_RS04580at 958.526 kb on - strand, within ABZR87_RS04580at 958.577 kb on + strand, within ABZR87_RS04580at 958.578 kb on - strand, within ABZR87_RS04580at 958.578 kb on - strand, within ABZR87_RS04580at 958.684 kb on + strand, within ABZR87_RS04580at 958.685 kb on - strand, within ABZR87_RS04580at 958.685 kb on - strand, within ABZR87_RS04580at 958.792 kb on + strand, within ABZR87_RS04580at 958.792 kb on + strand, within ABZR87_RS04580at 958.792 kb on + strand, within ABZR87_RS04580at 958.792 kb on + strand, within ABZR87_RS04580at 958.793 kb on - strand, within ABZR87_RS04580at 958.969 kb on + strand, within ABZR87_RS04580at 958.969 kb on + strand, within ABZR87_RS04580at 958.969 kb on + strand, within ABZR87_RS04580at 958.970 kb on - strand, within ABZR87_RS04580at 958.970 kb on - strand, within ABZR87_RS04580at 958.970 kb on - strand, within ABZR87_RS04580at 959.038 kb on + strandat 959.038 kb on + strandat 959.038 kb on + strandat 959.038 kb on + strandat 959.039 kb on - strandat 959.039 kb on - strandat 959.039 kb on - strandat 959.039 kb on - strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.166 kb on - strandat 959.166 kb on - strandat 959.366 kb on + strand, within ABZR87_RS04585at 959.366 kb on + strand, within ABZR87_RS04585at 959.366 kb on + strand, within ABZR87_RS04585at 959.367 kb on - strand, within ABZR87_RS04585at 959.465 kb on + strand, within ABZR87_RS04585at 959.466 kb on - strand, within ABZR87_RS04585at 959.466 kb on - strand, within ABZR87_RS04585at 959.466 kb on - strand, within ABZR87_RS04585at 959.474 kb on - strand, within ABZR87_RS04585at 959.478 kb on + strand, within ABZR87_RS04585at 959.478 kb on + strand, within ABZR87_RS04585at 959.522 kb on + strand, within ABZR87_RS04585at 959.522 kb on + strand, within ABZR87_RS04585at 959.523 kb on - strand, within ABZR87_RS04585at 959.523 kb on - strand, within ABZR87_RS04585at 959.523 kb on - strand, within ABZR87_RS04585at 959.523 kb on - strand, within ABZR87_RS04585at 959.523 kb on - strand, within ABZR87_RS04585at 959.812 kb on + strand, within ABZR87_RS04585at 959.812 kb on + strand, within ABZR87_RS04585at 959.812 kb on + strand, within ABZR87_RS04585at 959.812 kb on + strand, within ABZR87_RS04585at 959.813 kb on - strand, within ABZR87_RS04585at 959.813 kb on - strand, within ABZR87_RS04585at 959.813 kb on - strand, within ABZR87_RS04585at 959.893 kb on + strand, within ABZR87_RS04585

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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957,452 + ABZR87_RS04575 0.24 +1.2
957,452 + ABZR87_RS04575 0.24 -2.0
957,452 + ABZR87_RS04575 0.24 -1.2
957,452 + ABZR87_RS04575 0.24 -0.5
957,452 + ABZR87_RS04575 0.24 +0.1
957,452 + ABZR87_RS04575 0.24 +1.0
957,453 - ABZR87_RS04575 0.24 +0.0
957,453 - ABZR87_RS04575 0.24 +0.2
957,453 - ABZR87_RS04575 0.24 +5.3
957,453 - ABZR87_RS04575 0.24 -2.0
957,453 - ABZR87_RS04575 0.24 +0.1
957,453 - ABZR87_RS04575 0.24 -1.3
957,453 - ABZR87_RS04575 0.24 +2.2
957,453 - ABZR87_RS04575 0.24 +0.2
957,530 + ABZR87_RS04575 0.32 -0.5
957,531 - ABZR87_RS04575 0.32 -0.5
957,531 - ABZR87_RS04575 0.32 +0.6
957,725 + ABZR87_RS04575 0.50 +0.9
957,726 - ABZR87_RS04575 0.50 -1.1
957,726 - ABZR87_RS04575 0.50 +0.1
957,726 - ABZR87_RS04575 0.50 -0.5
957,726 - ABZR87_RS04575 0.50 +2.1
957,726 - ABZR87_RS04575 0.50 -0.7
957,761 + ABZR87_RS04575 0.54 -0.6
957,762 - ABZR87_RS04575 0.54 +0.8
957,895 + ABZR87_RS04575 0.67 +1.0
957,950 + ABZR87_RS04575 0.72 +1.5
957,950 + ABZR87_RS04575 0.72 -2.3
957,951 - ABZR87_RS04575 0.72 -0.4
957,961 + ABZR87_RS04575 0.73 -0.4
957,961 + ABZR87_RS04575 0.73 -1.4
957,962 - ABZR87_RS04575 0.73 -0.6
957,962 - ABZR87_RS04575 0.73 -0.1
957,962 - ABZR87_RS04575 0.73 -0.0
957,962 - ABZR87_RS04575 0.73 -1.4
957,962 - ABZR87_RS04575 0.73 -0.9
958,088 + ABZR87_RS04575 0.85 -0.6
958,088 + ABZR87_RS04575 0.85 +0.7
958,088 + ABZR87_RS04575 0.85 +0.3
958,089 - ABZR87_RS04575 0.85 +0.2
958,089 - ABZR87_RS04575 0.85 -0.8
958,089 - ABZR87_RS04575 0.85 -0.8
958,089 - ABZR87_RS04575 0.85 +0.4
958,089 - ABZR87_RS04575 0.85 -1.1
958,233 + -1.1
958,233 + +0.8
958,234 - +0.2
958,234 - +0.2
958,268 + -0.0
958,268 + -0.8
958,268 + +0.7
958,268 + -0.3
958,268 + +1.5
958,268 + -0.8
958,269 - -0.2
958,273 - -1.5
958,322 - +0.3
958,322 - +0.2
958,340 + -0.4
958,340 + -0.5
958,340 + -0.4
958,341 - -0.4
958,341 - -0.0
958,341 - -0.4
958,341 - -0.4
958,341 - -0.8
958,525 + ABZR87_RS04580 0.19 +0.4
958,525 + ABZR87_RS04580 0.19 +0.2
958,526 - ABZR87_RS04580 0.20 -0.8
958,526 - ABZR87_RS04580 0.20 -0.6
958,526 - ABZR87_RS04580 0.20 +0.1
958,526 - ABZR87_RS04580 0.20 -0.7
958,526 - ABZR87_RS04580 0.20 -1.4
958,577 + ABZR87_RS04580 0.27 +0.5
958,578 - ABZR87_RS04580 0.27 +0.1
958,578 - ABZR87_RS04580 0.27 -2.1
958,684 + ABZR87_RS04580 0.43 +0.3
958,685 - ABZR87_RS04580 0.43 -1.4
958,685 - ABZR87_RS04580 0.43 -0.1
958,792 + ABZR87_RS04580 0.59 -0.3
958,792 + ABZR87_RS04580 0.59 -2.2
958,792 + ABZR87_RS04580 0.59 -0.8
958,792 + ABZR87_RS04580 0.59 -1.3
958,793 - ABZR87_RS04580 0.59 -0.5
958,969 + ABZR87_RS04580 0.85 +0.4
958,969 + ABZR87_RS04580 0.85 -0.6
958,969 + ABZR87_RS04580 0.85 +0.6
958,970 - ABZR87_RS04580 0.85 -0.7
958,970 - ABZR87_RS04580 0.85 -2.7
958,970 - ABZR87_RS04580 0.85 +1.3
959,038 + +1.2
959,038 + +0.6
959,038 + +2.1
959,038 + -1.9
959,039 - -1.6
959,039 - +0.0
959,039 - -0.2
959,039 - -1.0
959,165 + -2.8
959,165 + -1.3
959,165 + +1.6
959,165 + -0.3
959,165 + +1.8
959,165 + +0.5
959,165 + +0.7
959,165 + +0.3
959,166 - -1.2
959,166 - +0.5
959,366 + ABZR87_RS04585 0.21 +0.4
959,366 + ABZR87_RS04585 0.21 +0.5
959,366 + ABZR87_RS04585 0.21 +0.3
959,367 - ABZR87_RS04585 0.21 -0.2
959,465 + ABZR87_RS04585 0.28 -0.4
959,466 - ABZR87_RS04585 0.28 -0.2
959,466 - ABZR87_RS04585 0.28 +0.3
959,466 - ABZR87_RS04585 0.28 -0.0
959,474 - ABZR87_RS04585 0.29 -0.3
959,478 + ABZR87_RS04585 0.29 +0.3
959,478 + ABZR87_RS04585 0.29 +0.5
959,522 + ABZR87_RS04585 0.32 +1.4
959,522 + ABZR87_RS04585 0.32 -0.5
959,523 - ABZR87_RS04585 0.32 +0.8
959,523 - ABZR87_RS04585 0.32 -2.1
959,523 - ABZR87_RS04585 0.32 +2.1
959,523 - ABZR87_RS04585 0.32 -0.2
959,523 - ABZR87_RS04585 0.32 +0.0
959,812 + ABZR87_RS04585 0.52 +0.8
959,812 + ABZR87_RS04585 0.52 +0.7
959,812 + ABZR87_RS04585 0.52 +0.1
959,812 + ABZR87_RS04585 0.52 -0.0
959,813 - ABZR87_RS04585 0.52 +2.2
959,813 - ABZR87_RS04585 0.52 -0.0
959,813 - ABZR87_RS04585 0.52 +0.7
959,893 + ABZR87_RS04585 0.57 +0.1

Or see this region's nucleotide sequence