Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01990 and ABZR87_RS01995 are separated by 380 nucleotides ABZR87_RS01995 and ABZR87_RS02000 are separated by 121 nucleotides
ABZR87_RS01990: ABZR87_RS01990 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase, at 424,125 to 424,778
_RS01990
ABZR87_RS01995: ABZR87_RS01995 - porin, at 425,159 to 426,337
_RS01995
ABZR87_RS02000: ABZR87_RS02000 - tripartite tricarboxylate transporter substrate binding protein, at 426,459 to 427,484
_RS02000
Position (kb) 425
426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.880 kb on + strand at 424.919 kb on + strand at 424.920 kb on - strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.061 kb on + strand at 425.061 kb on + strand at 425.061 kb on + strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.135 kb on - strand at 425.135 kb on - strand at 425.135 kb on - strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.237 kb on + strand at 425.237 kb on + strand at 425.237 kb on + strand at 425.237 kb on + strand at 425.238 kb on - strand at 425.238 kb on - strand at 425.238 kb on - strand at 425.238 kb on - strand at 425.264 kb on + strand at 425.264 kb on + strand at 425.264 kb on + strand at 425.264 kb on + strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.308 kb on - strand, within ABZR87_RS01995 at 425.392 kb on - strand, within ABZR87_RS01995 at 425.433 kb on - strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.582 kb on + strand, within ABZR87_RS01995 at 425.594 kb on + strand, within ABZR87_RS01995 at 425.594 kb on + strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.652 kb on - strand, within ABZR87_RS01995 at 425.652 kb on - strand, within ABZR87_RS01995 at 425.753 kb on + strand, within ABZR87_RS01995 at 425.753 kb on + strand, within ABZR87_RS01995 at 425.754 kb on - strand, within ABZR87_RS01995 at 425.754 kb on - strand, within ABZR87_RS01995 at 425.780 kb on - strand, within ABZR87_RS01995 at 425.787 kb on - strand, within ABZR87_RS01995 at 425.843 kb on + strand, within ABZR87_RS01995 at 425.843 kb on + strand, within ABZR87_RS01995 at 425.844 kb on - strand, within ABZR87_RS01995 at 425.879 kb on + strand, within ABZR87_RS01995 at 425.879 kb on + strand, within ABZR87_RS01995 at 425.879 kb on + strand, within ABZR87_RS01995 at 425.880 kb on - strand, within ABZR87_RS01995 at 425.880 kb on - strand, within ABZR87_RS01995 at 425.880 kb on - strand, within ABZR87_RS01995 at 425.919 kb on - strand, within ABZR87_RS01995 at 425.981 kb on + strand, within ABZR87_RS01995 at 425.981 kb on + strand, within ABZR87_RS01995 at 425.982 kb on - strand, within ABZR87_RS01995 at 425.982 kb on - strand, within ABZR87_RS01995 at 425.982 kb on - strand, within ABZR87_RS01995 at 425.982 kb on - strand, within ABZR87_RS01995 at 425.982 kb on - strand, within ABZR87_RS01995 at 425.982 kb on - strand, within ABZR87_RS01995 at 425.984 kb on + strand, within ABZR87_RS01995 at 425.984 kb on + strand, within ABZR87_RS01995 at 425.984 kb on + strand, within ABZR87_RS01995 at 425.984 kb on + strand, within ABZR87_RS01995 at 425.985 kb on - strand, within ABZR87_RS01995 at 425.985 kb on - strand, within ABZR87_RS01995 at 425.985 kb on - strand, within ABZR87_RS01995 at 425.985 kb on - strand, within ABZR87_RS01995 at 426.002 kb on + strand, within ABZR87_RS01995 at 426.002 kb on + strand, within ABZR87_RS01995 at 426.002 kb on + strand, within ABZR87_RS01995 at 426.002 kb on + strand, within ABZR87_RS01995 at 426.003 kb on - strand, within ABZR87_RS01995 at 426.003 kb on - strand, within ABZR87_RS01995 at 426.003 kb on - strand, within ABZR87_RS01995 at 426.038 kb on + strand, within ABZR87_RS01995 at 426.038 kb on + strand, within ABZR87_RS01995 at 426.039 kb on - strand, within ABZR87_RS01995 at 426.041 kb on + strand, within ABZR87_RS01995 at 426.041 kb on + strand, within ABZR87_RS01995 at 426.041 kb on + strand, within ABZR87_RS01995 at 426.041 kb on + strand, within ABZR87_RS01995 at 426.041 kb on + strand, within ABZR87_RS01995 at 426.041 kb on + strand, within ABZR87_RS01995 at 426.042 kb on - strand, within ABZR87_RS01995 at 426.042 kb on - strand, within ABZR87_RS01995 at 426.042 kb on - strand, within ABZR87_RS01995 at 426.042 kb on - strand, within ABZR87_RS01995 at 426.042 kb on - strand, within ABZR87_RS01995 at 426.044 kb on + strand, within ABZR87_RS01995 at 426.045 kb on - strand, within ABZR87_RS01995 at 426.045 kb on - strand, within ABZR87_RS01995 at 426.125 kb on + strand, within ABZR87_RS01995 at 426.125 kb on + strand, within ABZR87_RS01995 at 426.126 kb on - strand, within ABZR87_RS01995 at 426.126 kb on - strand, within ABZR87_RS01995 at 426.152 kb on + strand, within ABZR87_RS01995 at 426.152 kb on + strand, within ABZR87_RS01995 at 426.152 kb on + strand, within ABZR87_RS01995 at 426.153 kb on - strand, within ABZR87_RS01995 at 426.153 kb on - strand, within ABZR87_RS01995 at 426.153 kb on - strand, within ABZR87_RS01995 at 426.153 kb on - strand, within ABZR87_RS01995 at 426.167 kb on + strand, within ABZR87_RS01995 at 426.206 kb on + strand, within ABZR87_RS01995 at 426.207 kb on - strand, within ABZR87_RS01995 at 426.207 kb on - strand, within ABZR87_RS01995 at 426.248 kb on + strand at 426.248 kb on + strand at 426.272 kb on + strand at 426.272 kb on + strand at 426.272 kb on + strand at 426.272 kb on + strand at 426.272 kb on + strand at 426.272 kb on + strand at 426.273 kb on - strand at 426.273 kb on - strand at 426.273 kb on - strand at 426.273 kb on - strand at 426.273 kb on - strand at 426.273 kb on - strand at 426.273 kb on - strand at 426.422 kb on + strand at 426.422 kb on + strand at 426.745 kb on - strand, within ABZR87_RS02000 at 426.943 kb on - strand, within ABZR87_RS02000 at 427.059 kb on + strand, within ABZR87_RS02000 at 427.059 kb on + strand, within ABZR87_RS02000 at 427.059 kb on + strand, within ABZR87_RS02000 at 427.059 kb on + strand, within ABZR87_RS02000 at 427.060 kb on - strand, within ABZR87_RS02000 at 427.248 kb on + strand, within ABZR87_RS02000 at 427.249 kb on - strand, within ABZR87_RS02000 at 427.249 kb on - strand, within ABZR87_RS02000 at 427.249 kb on - strand, within ABZR87_RS02000 at 427.249 kb on - strand, within ABZR87_RS02000 at 427.249 kb on - strand, within ABZR87_RS02000
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 424,778 + -1.8 424,778 + -1.5 424,778 + +0.3 424,778 + +0.3 424,778 + -2.6 424,778 + +0.1 424,778 + -0.9 424,778 + +1.3 424,779 - +0.3 424,779 - +0.2 424,779 - +0.7 424,779 - +0.4 424,779 - +0.7 424,779 - +0.7 424,779 - -0.5 424,779 - +0.4 424,779 - +2.9 424,779 - +1.4 424,779 - -0.8 424,779 - -0.3 424,779 - -0.0 424,782 + -2.7 424,782 + +0.3 424,782 + -1.6 424,782 + -0.3 424,782 + -0.4 424,782 + -0.5 424,782 + +0.2 424,782 + +1.4 424,782 + -1.2 424,783 - -0.5 424,783 - -1.7 424,783 - -0.4 424,783 - +1.6 424,783 - -1.9 424,783 - +0.3 424,783 - -2.0 424,783 - -0.5 424,783 - +0.7 424,824 + -1.7 424,824 + -2.0 424,824 + -0.8 424,824 + +1.6 424,824 + -0.0 424,825 - +0.2 424,825 - -0.3 424,825 - +0.1 424,825 - +0.4 424,825 - -1.1 424,825 - +4.9 424,880 + +0.5 424,919 + -0.2 424,920 - +1.8 425,056 + -0.8 425,056 + -0.4 425,056 + -1.0 425,056 + +0.9 425,057 - +1.2 425,057 - -0.5 425,057 - -0.7 425,057 - +0.9 425,057 - +0.1 425,057 - +0.1 425,057 - -0.9 425,057 - -0.2 425,057 - +0.5 425,057 - +0.5 425,061 + -0.6 425,061 + +0.1 425,061 + -0.6 425,062 - +1.1 425,062 - +1.6 425,062 - -0.8 425,062 - -0.3 425,062 - -0.7 425,062 - +0.3 425,062 - -0.6 425,062 - -2.0 425,062 - +0.2 425,062 - +0.6 425,134 + +1.0 425,134 + -0.4 425,134 + +0.7 425,134 + -0.4 425,134 + +0.7 425,135 - -1.5 425,135 - -0.5 425,135 - -0.3 425,138 + +0.1 425,138 + -0.9 425,138 + +0.4 425,138 + +0.6 425,139 - +0.1 425,139 - -0.7 425,139 - +0.5 425,139 - +0.3 425,139 - +0.3 425,139 - -0.3 425,237 + -0.6 425,237 + +0.6 425,237 + -0.4 425,237 + -1.1 425,238 - -0.7 425,238 - -0.2 425,238 - -0.9 425,238 - +0.3 425,264 + +0.5 425,264 + -0.3 425,264 + -0.3 425,264 + -0.8 425,265 - -0.4 425,265 - +0.4 425,265 - -2.4 425,265 - +0.6 425,265 - -1.5 425,265 - -2.7 425,308 - ABZR87_RS01995 0.13 +0.2 425,392 - ABZR87_RS01995 0.20 -0.6 425,433 - ABZR87_RS01995 0.23 -0.5 425,537 + ABZR87_RS01995 0.32 -0.4 425,537 + ABZR87_RS01995 0.32 +0.1 425,537 + ABZR87_RS01995 0.32 -0.4 425,537 + ABZR87_RS01995 0.32 +0.8 425,537 + ABZR87_RS01995 0.32 +0.6 425,538 - ABZR87_RS01995 0.32 -0.1 425,538 - ABZR87_RS01995 0.32 +0.5 425,538 - ABZR87_RS01995 0.32 -0.1 425,538 - ABZR87_RS01995 0.32 +0.4 425,538 - ABZR87_RS01995 0.32 +0.5 425,538 - ABZR87_RS01995 0.32 +0.1 425,582 + ABZR87_RS01995 0.36 -0.9 425,594 + ABZR87_RS01995 0.37 -1.4 425,594 + ABZR87_RS01995 0.37 +1.1 425,595 - ABZR87_RS01995 0.37 +0.8 425,595 - ABZR87_RS01995 0.37 -0.4 425,595 - ABZR87_RS01995 0.37 -0.6 425,595 - ABZR87_RS01995 0.37 +0.6 425,651 + ABZR87_RS01995 0.42 +0.1 425,651 + ABZR87_RS01995 0.42 -0.3 425,651 + ABZR87_RS01995 0.42 -0.9 425,651 + ABZR87_RS01995 0.42 +0.9 425,651 + ABZR87_RS01995 0.42 -0.5 425,652 - ABZR87_RS01995 0.42 -0.5 425,652 - ABZR87_RS01995 0.42 -0.2 425,753 + ABZR87_RS01995 0.50 +1.3 425,753 + ABZR87_RS01995 0.50 -0.7 425,754 - ABZR87_RS01995 0.50 +1.3 425,754 - ABZR87_RS01995 0.50 -0.2 425,780 - ABZR87_RS01995 0.53 -1.4 425,787 - ABZR87_RS01995 0.53 +0.3 425,843 + ABZR87_RS01995 0.58 -0.2 425,843 + ABZR87_RS01995 0.58 +3.0 425,844 - ABZR87_RS01995 0.58 -2.2 425,879 + ABZR87_RS01995 0.61 +0.3 425,879 + ABZR87_RS01995 0.61 +0.8 425,879 + ABZR87_RS01995 0.61 -0.7 425,880 - ABZR87_RS01995 0.61 +0.6 425,880 - ABZR87_RS01995 0.61 -0.1 425,880 - ABZR87_RS01995 0.61 +0.1 425,919 - ABZR87_RS01995 0.64 -0.0 425,981 + ABZR87_RS01995 0.70 -1.6 425,981 + ABZR87_RS01995 0.70 -1.1 425,982 - ABZR87_RS01995 0.70 +1.0 425,982 - ABZR87_RS01995 0.70 -3.2 425,982 - ABZR87_RS01995 0.70 -0.6 425,982 - ABZR87_RS01995 0.70 -0.9 425,982 - ABZR87_RS01995 0.70 +0.1 425,982 - ABZR87_RS01995 0.70 +0.0 425,984 + ABZR87_RS01995 0.70 -0.0 425,984 + ABZR87_RS01995 0.70 -0.5 425,984 + ABZR87_RS01995 0.70 +3.7 425,984 + ABZR87_RS01995 0.70 +0.0 425,985 - ABZR87_RS01995 0.70 -0.2 425,985 - ABZR87_RS01995 0.70 -1.2 425,985 - ABZR87_RS01995 0.70 -0.4 425,985 - ABZR87_RS01995 0.70 -0.7 426,002 + ABZR87_RS01995 0.72 -0.9 426,002 + ABZR87_RS01995 0.72 -0.4 426,002 + ABZR87_RS01995 0.72 +0.1 426,002 + ABZR87_RS01995 0.72 -0.1 426,003 - ABZR87_RS01995 0.72 +0.1 426,003 - ABZR87_RS01995 0.72 -1.3 426,003 - ABZR87_RS01995 0.72 -1.6 426,038 + ABZR87_RS01995 0.75 -0.4 426,038 + ABZR87_RS01995 0.75 -0.3 426,039 - ABZR87_RS01995 0.75 -0.3 426,041 + ABZR87_RS01995 0.75 -1.0 426,041 + ABZR87_RS01995 0.75 -0.3 426,041 + ABZR87_RS01995 0.75 -1.1 426,041 + ABZR87_RS01995 0.75 +0.3 426,041 + ABZR87_RS01995 0.75 -1.7 426,041 + ABZR87_RS01995 0.75 -1.4 426,042 - ABZR87_RS01995 0.75 +0.1 426,042 - ABZR87_RS01995 0.75 -2.8 426,042 - ABZR87_RS01995 0.75 +0.0 426,042 - ABZR87_RS01995 0.75 +0.6 426,042 - ABZR87_RS01995 0.75 +1.3 426,044 + ABZR87_RS01995 0.75 +1.5 426,045 - ABZR87_RS01995 0.75 -0.1 426,045 - ABZR87_RS01995 0.75 +0.6 426,125 + ABZR87_RS01995 0.82 -0.2 426,125 + ABZR87_RS01995 0.82 -0.6 426,126 - ABZR87_RS01995 0.82 -0.2 426,126 - ABZR87_RS01995 0.82 +0.5 426,152 + ABZR87_RS01995 0.84 +0.1 426,152 + ABZR87_RS01995 0.84 -0.1 426,152 + ABZR87_RS01995 0.84 -0.5 426,153 - ABZR87_RS01995 0.84 +0.2 426,153 - ABZR87_RS01995 0.84 +1.1 426,153 - ABZR87_RS01995 0.84 +0.9 426,153 - ABZR87_RS01995 0.84 +1.2 426,167 + ABZR87_RS01995 0.85 -0.7 426,206 + ABZR87_RS01995 0.89 -0.6 426,207 - ABZR87_RS01995 0.89 -0.1 426,207 - ABZR87_RS01995 0.89 -0.9 426,248 + -0.2 426,248 + -0.5 426,272 + -0.4 426,272 + +1.1 426,272 + +0.1 426,272 + +0.1 426,272 + -0.2 426,272 + -1.7 426,273 - -0.6 426,273 - +0.5 426,273 - -0.2 426,273 - +0.5 426,273 - +1.2 426,273 - +0.1 426,273 - +2.0 426,422 + -2.1 426,422 + +3.2 426,745 - ABZR87_RS02000 0.28 -1.1 426,943 - ABZR87_RS02000 0.47 -0.2 427,059 + ABZR87_RS02000 0.58 +0.3 427,059 + ABZR87_RS02000 0.58 -0.0 427,059 + ABZR87_RS02000 0.58 +0.4 427,059 + ABZR87_RS02000 0.58 +0.6 427,060 - ABZR87_RS02000 0.59 +0.9 427,248 + ABZR87_RS02000 0.77 +0.5 427,249 - ABZR87_RS02000 0.77 +0.1 427,249 - ABZR87_RS02000 0.77 +1.3 427,249 - ABZR87_RS02000 0.77 -0.6 427,249 - ABZR87_RS02000 0.77 +0.2 427,249 - ABZR87_RS02000 0.77 +2.2
Or see this region's nucleotide sequence