Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01905 and ABZR87_RS01910 are separated by 244 nucleotides ABZR87_RS01910 and ABZR87_RS01915 are separated by 391 nucleotides
ABZR87_RS01905: ABZR87_RS01905 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 404,018 to 404,935
_RS01905
ABZR87_RS01910: ABZR87_RS01910 - peroxiredoxin, at 405,180 to 405,680
_RS01910
ABZR87_RS01915: ABZR87_RS01915 - cell division protein FtsZ, at 406,072 to 407,271
_RS01915
Position (kb)
405
406 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 404.978 kb on - strand at 404.978 kb on - strand at 404.991 kb on - strand at 404.991 kb on - strand at 405.057 kb on + strand at 405.057 kb on + strand at 405.058 kb on - strand at 405.058 kb on - strand at 405.084 kb on + strand at 405.084 kb on + strand at 405.084 kb on + strand at 405.084 kb on + strand at 405.084 kb on + strand at 405.084 kb on + strand at 405.085 kb on - strand at 405.146 kb on + strand at 405.147 kb on - strand at 405.253 kb on - strand, within ABZR87_RS01910 at 405.281 kb on - strand, within ABZR87_RS01910 at 405.622 kb on + strand, within ABZR87_RS01910 at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 404,978 - -0.6 404,978 - -1.7 404,991 - +1.6 404,991 - +1.5 405,057 + -2.0 405,057 + +0.3 405,058 - -0.5 405,058 - -1.9 405,084 + -0.3 405,084 + +0.5 405,084 + -1.4 405,084 + -1.5 405,084 + +0.8 405,084 + -0.9 405,085 - -2.2 405,146 + -0.3 405,147 - -1.7 405,253 - ABZR87_RS01910 0.15 +1.8 405,281 - ABZR87_RS01910 0.20 +0.5 405,622 + ABZR87_RS01910 0.88 -0.8 405,717 + -0.7 405,717 + +1.5 405,717 + +1.1 405,717 + -1.0 405,717 + +0.2 405,717 + +0.1 405,717 + -0.2 405,717 + -1.1 405,717 + -0.8 405,718 - +0.8 405,718 - -0.7 405,718 - -0.2 405,718 - +0.9 405,718 - +0.1 405,718 - +0.9 405,718 - +0.5 405,718 - -0.5 405,718 - -0.5 405,718 - +1.0 405,718 - +0.1 405,751 - +1.1
Or see this region's nucleotide sequence