Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01185 and ABZR87_RS01190 are separated by 28 nucleotides ABZR87_RS01190 and ABZR87_RS01195 are separated by 2 nucleotides ABZR87_RS01195 and ABZR87_RS01200 overlap by 4 nucleotides ABZR87_RS01200 and ABZR87_RS01205 overlap by 4 nucleotides
ABZR87_RS01185: ABZR87_RS01185 - PilC/PilY family type IV pilus protein, at 244,429 to 247,698
_RS01185
ABZR87_RS01190: ABZR87_RS01190 - pilus assembly PilX N-terminal domain-containing protein, at 247,727 to 248,296
_RS01190
ABZR87_RS01195: ABZR87_RS01195 - PilW family protein, at 248,299 to 249,363
_RS01195
ABZR87_RS01200: ABZR87_RS01200 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 249,360 to 249,962
_RS01200
ABZR87_RS01205: ABZR87_RS01205 - GspH/FimT family pseudopilin, at 249,959 to 250,432
_RS01205
Position (kb) 248
249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 247.439 kb on + strand at 247.439 kb on + strand at 247.440 kb on - strand at 247.440 kb on - strand at 247.598 kb on + strand at 247.599 kb on - strand at 247.599 kb on - strand at 247.608 kb on + strand at 247.609 kb on - strand at 247.698 kb on + strand at 247.698 kb on + strand at 247.698 kb on + strand at 247.699 kb on - strand at 247.699 kb on - strand at 247.699 kb on - strand at 247.699 kb on - strand at 247.699 kb on - strand at 247.728 kb on + strand at 247.728 kb on + strand at 247.728 kb on + strand at 247.954 kb on + strand, within ABZR87_RS01190 at 247.955 kb on - strand, within ABZR87_RS01190 at 247.955 kb on - strand, within ABZR87_RS01190 at 247.955 kb on - strand, within ABZR87_RS01190 at 247.972 kb on + strand, within ABZR87_RS01190 at 247.973 kb on - strand, within ABZR87_RS01190 at 247.973 kb on - strand, within ABZR87_RS01190 at 247.973 kb on - strand, within ABZR87_RS01190 at 248.025 kb on + strand, within ABZR87_RS01190 at 248.025 kb on + strand, within ABZR87_RS01190 at 248.026 kb on - strand, within ABZR87_RS01190 at 248.026 kb on - strand, within ABZR87_RS01190 at 248.113 kb on + strand, within ABZR87_RS01190 at 248.113 kb on + strand, within ABZR87_RS01190 at 248.114 kb on - strand, within ABZR87_RS01190 at 248.114 kb on - strand, within ABZR87_RS01190 at 248.148 kb on + strand, within ABZR87_RS01190 at 248.149 kb on - strand, within ABZR87_RS01190 at 248.360 kb on + strand at 248.360 kb on + strand at 248.361 kb on - strand at 248.405 kb on + strand at 248.405 kb on + strand at 248.405 kb on + strand at 248.405 kb on + strand at 248.405 kb on + strand at 248.406 kb on - strand, within ABZR87_RS01195 at 248.406 kb on - strand, within ABZR87_RS01195 at 248.406 kb on - strand, within ABZR87_RS01195 at 248.416 kb on - strand, within ABZR87_RS01195 at 248.516 kb on + strand, within ABZR87_RS01195 at 248.533 kb on - strand, within ABZR87_RS01195 at 248.570 kb on + strand, within ABZR87_RS01195 at 248.570 kb on + strand, within ABZR87_RS01195 at 248.609 kb on + strand, within ABZR87_RS01195 at 248.672 kb on + strand, within ABZR87_RS01195 at 248.741 kb on + strand, within ABZR87_RS01195 at 248.741 kb on + strand, within ABZR87_RS01195 at 248.741 kb on + strand, within ABZR87_RS01195 at 248.742 kb on - strand, within ABZR87_RS01195 at 248.873 kb on + strand, within ABZR87_RS01195 at 248.996 kb on + strand, within ABZR87_RS01195 at 248.996 kb on + strand, within ABZR87_RS01195 at 249.002 kb on + strand, within ABZR87_RS01195 at 249.002 kb on + strand, within ABZR87_RS01195 at 249.002 kb on + strand, within ABZR87_RS01195 at 249.002 kb on + strand, within ABZR87_RS01195 at 249.003 kb on - strand, within ABZR87_RS01195 at 249.003 kb on - strand, within ABZR87_RS01195 at 249.003 kb on - strand, within ABZR87_RS01195 at 249.003 kb on - strand, within ABZR87_RS01195 at 249.161 kb on + strand, within ABZR87_RS01195 at 249.161 kb on + strand, within ABZR87_RS01195 at 249.227 kb on + strand, within ABZR87_RS01195 at 249.227 kb on + strand, within ABZR87_RS01195 at 249.227 kb on + strand, within ABZR87_RS01195 at 249.227 kb on + strand, within ABZR87_RS01195 at 249.227 kb on + strand, within ABZR87_RS01195 at 249.228 kb on - strand, within ABZR87_RS01195 at 249.228 kb on - strand, within ABZR87_RS01195 at 249.228 kb on - strand, within ABZR87_RS01195 at 249.228 kb on - strand, within ABZR87_RS01195 at 249.228 kb on - strand, within ABZR87_RS01195 at 249.228 kb on - strand, within ABZR87_RS01195 at 249.422 kb on - strand, within ABZR87_RS01200 at 249.499 kb on + strand, within ABZR87_RS01200 at 249.500 kb on - strand, within ABZR87_RS01200 at 249.591 kb on - strand, within ABZR87_RS01200 at 249.724 kb on + strand, within ABZR87_RS01200 at 249.724 kb on + strand, within ABZR87_RS01200 at 249.724 kb on + strand, within ABZR87_RS01200 at 249.725 kb on - strand, within ABZR87_RS01200 at 249.725 kb on - strand, within ABZR87_RS01200 at 249.725 kb on - strand, within ABZR87_RS01200 at 249.725 kb on - strand, within ABZR87_RS01200 at 249.802 kb on + strand, within ABZR87_RS01200 at 250.143 kb on + strand, within ABZR87_RS01205
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 247,439 + -1.4 247,439 + -0.8 247,440 - +1.6 247,440 - -1.5 247,598 + +1.1 247,599 - -1.6 247,599 - +1.5 247,608 + +0.7 247,609 - -0.2 247,698 + -1.4 247,698 + +0.6 247,698 + -0.1 247,699 - -0.9 247,699 - -1.0 247,699 - -1.0 247,699 - -0.4 247,699 - -0.3 247,728 + +0.5 247,728 + -0.5 247,728 + +0.2 247,954 + ABZR87_RS01190 0.40 -0.4 247,955 - ABZR87_RS01190 0.40 +0.4 247,955 - ABZR87_RS01190 0.40 -0.4 247,955 - ABZR87_RS01190 0.40 +1.1 247,972 + ABZR87_RS01190 0.43 +0.3 247,973 - ABZR87_RS01190 0.43 -0.3 247,973 - ABZR87_RS01190 0.43 +2.8 247,973 - ABZR87_RS01190 0.43 +0.9 248,025 + ABZR87_RS01190 0.52 -0.0 248,025 + ABZR87_RS01190 0.52 -0.0 248,026 - ABZR87_RS01190 0.52 -1.6 248,026 - ABZR87_RS01190 0.52 +0.7 248,113 + ABZR87_RS01190 0.68 +2.1 248,113 + ABZR87_RS01190 0.68 -1.0 248,114 - ABZR87_RS01190 0.68 +0.2 248,114 - ABZR87_RS01190 0.68 -0.6 248,148 + ABZR87_RS01190 0.74 -2.9 248,149 - ABZR87_RS01190 0.74 -0.9 248,360 + -0.4 248,360 + +0.2 248,361 - +0.2 248,405 + -0.4 248,405 + -0.8 248,405 + +0.8 248,405 + +0.3 248,405 + +3.0 248,406 - ABZR87_RS01195 0.10 +0.5 248,406 - ABZR87_RS01195 0.10 +0.6 248,406 - ABZR87_RS01195 0.10 -0.8 248,416 - ABZR87_RS01195 0.11 +2.5 248,516 + ABZR87_RS01195 0.20 -1.3 248,533 - ABZR87_RS01195 0.22 +1.7 248,570 + ABZR87_RS01195 0.25 +1.6 248,570 + ABZR87_RS01195 0.25 +1.8 248,609 + ABZR87_RS01195 0.29 -0.7 248,672 + ABZR87_RS01195 0.35 +1.4 248,741 + ABZR87_RS01195 0.42 +0.2 248,741 + ABZR87_RS01195 0.42 -0.8 248,741 + ABZR87_RS01195 0.42 +0.3 248,742 - ABZR87_RS01195 0.42 -0.2 248,873 + ABZR87_RS01195 0.54 +0.1 248,996 + ABZR87_RS01195 0.65 +0.4 248,996 + ABZR87_RS01195 0.65 +1.3 249,002 + ABZR87_RS01195 0.66 +0.3 249,002 + ABZR87_RS01195 0.66 +0.0 249,002 + ABZR87_RS01195 0.66 +0.8 249,002 + ABZR87_RS01195 0.66 +5.9 249,003 - ABZR87_RS01195 0.66 -1.8 249,003 - ABZR87_RS01195 0.66 +0.5 249,003 - ABZR87_RS01195 0.66 -0.0 249,003 - ABZR87_RS01195 0.66 -0.4 249,161 + ABZR87_RS01195 0.81 -1.3 249,161 + ABZR87_RS01195 0.81 +2.1 249,227 + ABZR87_RS01195 0.87 +0.3 249,227 + ABZR87_RS01195 0.87 +1.0 249,227 + ABZR87_RS01195 0.87 -0.6 249,227 + ABZR87_RS01195 0.87 +0.5 249,227 + ABZR87_RS01195 0.87 -2.3 249,228 - ABZR87_RS01195 0.87 -0.2 249,228 - ABZR87_RS01195 0.87 +0.9 249,228 - ABZR87_RS01195 0.87 +0.8 249,228 - ABZR87_RS01195 0.87 +0.9 249,228 - ABZR87_RS01195 0.87 +2.0 249,228 - ABZR87_RS01195 0.87 -1.3 249,422 - ABZR87_RS01200 0.10 -0.7 249,499 + ABZR87_RS01200 0.23 -1.2 249,500 - ABZR87_RS01200 0.23 -1.6 249,591 - ABZR87_RS01200 0.38 +0.1 249,724 + ABZR87_RS01200 0.60 -1.8 249,724 + ABZR87_RS01200 0.60 +0.3 249,724 + ABZR87_RS01200 0.60 +0.2 249,725 - ABZR87_RS01200 0.61 -2.2 249,725 - ABZR87_RS01200 0.61 -0.5 249,725 - ABZR87_RS01200 0.61 +0.6 249,725 - ABZR87_RS01200 0.61 +0.5 249,802 + ABZR87_RS01200 0.73 +0.5 250,143 + ABZR87_RS01205 0.39 +1.4
Or see this region's nucleotide sequence