Experiment: Magnesium chloride 0.125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3638 and Pf6N2E2_3639 are separated by 716 nucleotides Pf6N2E2_3639 and Pf6N2E2_3640 are separated by 102 nucleotides Pf6N2E2_3640 and Pf6N2E2_3641 overlap by 10 nucleotides
Pf6N2E2_3638 - hypothetical protein, at 4,238,155 to 4,238,358
_3638
Pf6N2E2_3639 - 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17), at 4,239,075 to 4,239,911
_3639
Pf6N2E2_3640 - FIG074102: hypothetical protein, at 4,240,014 to 4,240,466
_3640
Pf6N2E2_3641 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 4,240,457 to 4,241,074
_3641
Position (kb)
4239
4240 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4238.156 kb on + strand at 4238.157 kb on - strand at 4238.157 kb on - strand at 4238.297 kb on - strand, within Pf6N2E2_3638 at 4238.318 kb on - strand, within Pf6N2E2_3638 at 4238.348 kb on - strand at 4238.408 kb on + strand at 4238.408 kb on + strand at 4238.503 kb on - strand at 4238.514 kb on + strand at 4238.514 kb on + strand at 4238.514 kb on + strand at 4238.515 kb on - strand at 4238.515 kb on - strand at 4238.515 kb on - strand at 4238.515 kb on - strand at 4238.528 kb on + strand at 4238.528 kb on + strand at 4238.528 kb on + strand at 4238.529 kb on - strand at 4238.539 kb on + strand at 4238.539 kb on + strand at 4238.540 kb on - strand at 4238.540 kb on - strand at 4238.540 kb on - strand at 4238.540 kb on - strand at 4238.540 kb on - strand at 4238.540 kb on - strand at 4238.772 kb on + strand at 4238.773 kb on - strand at 4238.773 kb on - strand at 4238.774 kb on + strand at 4238.774 kb on + strand at 4238.775 kb on - strand at 4238.834 kb on - strand at 4238.834 kb on - strand at 4238.834 kb on - strand at 4238.834 kb on - strand at 4238.873 kb on + strand at 4239.032 kb on - strand at 4239.032 kb on - strand at 4239.032 kb on - strand at 4239.032 kb on - strand at 4239.036 kb on - strand at 4239.036 kb on - strand at 4239.057 kb on + strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.061 kb on + strand at 4239.062 kb on - strand at 4239.062 kb on - strand at 4239.062 kb on - strand at 4239.062 kb on - strand at 4239.095 kb on - strand at 4239.095 kb on - strand at 4239.095 kb on - strand at 4239.105 kb on - strand at 4239.879 kb on + strand at 4239.879 kb on + strand at 4239.880 kb on - strand at 4239.880 kb on - strand at 4239.880 kb on - strand at 4239.880 kb on - strand at 4239.937 kb on + strand at 4239.937 kb on + strand at 4239.937 kb on + strand at 4239.937 kb on + strand at 4239.938 kb on - strand at 4239.938 kb on - strand at 4239.938 kb on - strand at 4239.938 kb on - strand at 4239.938 kb on - strand at 4240.001 kb on - strand at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.195 kb on + strand, within Pf6N2E2_3640 at 4240.196 kb on - strand, within Pf6N2E2_3640 at 4240.196 kb on - strand, within Pf6N2E2_3640 at 4240.196 kb on - strand, within Pf6N2E2_3640 at 4240.270 kb on + strand, within Pf6N2E2_3640 at 4240.393 kb on + strand, within Pf6N2E2_3640 at 4240.394 kb on - strand, within Pf6N2E2_3640 at 4240.394 kb on - strand, within Pf6N2E2_3640 at 4240.466 kb on + strand at 4240.592 kb on - strand, within Pf6N2E2_3641 at 4240.699 kb on - strand, within Pf6N2E2_3641 at 4240.699 kb on - strand, within Pf6N2E2_3641
Per-strain Table
Position Strand Gene LocusTag Fraction Magnesium chloride 0.125 M remove 4,238,156 + +2.1 4,238,157 - -1.4 4,238,157 - +0.2 4,238,297 - Pf6N2E2_3638 0.70 +0.4 4,238,318 - Pf6N2E2_3638 0.80 -1.3 4,238,348 - -0.6 4,238,408 + +1.7 4,238,408 + +0.3 4,238,503 - -0.6 4,238,514 + +0.1 4,238,514 + -0.3 4,238,514 + +1.0 4,238,515 - +0.2 4,238,515 - +1.5 4,238,515 - -0.5 4,238,515 - +1.1 4,238,528 + +0.5 4,238,528 + +0.2 4,238,528 + +1.3 4,238,529 - -0.0 4,238,539 + -0.8 4,238,539 + +0.1 4,238,540 - +1.3 4,238,540 - +1.2 4,238,540 - +2.0 4,238,540 - +1.5 4,238,540 - +2.3 4,238,540 - +1.3 4,238,772 + -0.4 4,238,773 - +0.5 4,238,773 - +0.5 4,238,774 + -0.4 4,238,774 + +0.3 4,238,775 - +0.6 4,238,834 - +0.4 4,238,834 - -0.1 4,238,834 - -0.4 4,238,834 - +1.2 4,238,873 + -0.6 4,239,032 - +0.6 4,239,032 - -0.5 4,239,032 - +0.7 4,239,032 - -0.7 4,239,036 - +0.1 4,239,036 - +0.9 4,239,057 + +1.4 4,239,058 - +0.0 4,239,058 - -2.3 4,239,058 - +2.9 4,239,058 - -1.2 4,239,058 - +0.6 4,239,058 - -0.1 4,239,058 - -0.3 4,239,058 - -0.7 4,239,061 + +0.5 4,239,062 - -0.4 4,239,062 - -1.3 4,239,062 - -0.2 4,239,062 - +1.3 4,239,095 - +1.0 4,239,095 - +0.4 4,239,095 - +0.4 4,239,105 - -0.3 4,239,879 + +1.5 4,239,879 + -0.1 4,239,880 - +0.0 4,239,880 - +0.4 4,239,880 - +0.3 4,239,880 - -0.5 4,239,937 + -0.4 4,239,937 + +0.3 4,239,937 + -0.2 4,239,937 + -2.1 4,239,938 - -1.4 4,239,938 - +0.1 4,239,938 - +0.4 4,239,938 - -0.4 4,239,938 - -0.4 4,240,001 - +0.2 4,240,132 + Pf6N2E2_3640 0.26 +1.1 4,240,132 + Pf6N2E2_3640 0.26 +0.3 4,240,132 + Pf6N2E2_3640 0.26 +1.1 4,240,132 + Pf6N2E2_3640 0.26 -0.2 4,240,132 + Pf6N2E2_3640 0.26 -1.1 4,240,132 + Pf6N2E2_3640 0.26 -0.7 4,240,132 + Pf6N2E2_3640 0.26 +0.2 4,240,133 - Pf6N2E2_3640 0.26 +1.1 4,240,133 - Pf6N2E2_3640 0.26 +1.1 4,240,133 - Pf6N2E2_3640 0.26 +1.4 4,240,133 - Pf6N2E2_3640 0.26 -0.6 4,240,133 - Pf6N2E2_3640 0.26 +0.1 4,240,133 - Pf6N2E2_3640 0.26 +0.7 4,240,195 + Pf6N2E2_3640 0.40 -0.2 4,240,196 - Pf6N2E2_3640 0.40 -1.3 4,240,196 - Pf6N2E2_3640 0.40 -1.2 4,240,196 - Pf6N2E2_3640 0.40 -0.1 4,240,270 + Pf6N2E2_3640 0.57 -0.3 4,240,393 + Pf6N2E2_3640 0.84 -0.7 4,240,394 - Pf6N2E2_3640 0.84 +1.6 4,240,394 - Pf6N2E2_3640 0.84 -0.3 4,240,466 + +1.9 4,240,592 - Pf6N2E2_3641 0.22 -0.6 4,240,699 - Pf6N2E2_3641 0.39 -1.0 4,240,699 - Pf6N2E2_3641 0.39 +0.4
Or see this region's nucleotide sequence