Experiment: Magnesium chloride 0.125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1239 and Pf6N2E2_6105 are separated by 124 nucleotides Pf6N2E2_6105 and Pf6N2E2_1240 are separated by 127 nucleotides Pf6N2E2_1240 and Pf6N2E2_1241 are separated by 265 nucleotides
Pf6N2E2_1239 - Putative TEGT family carrier/transport protein, at 1,452,240 to 1,452,911
_1239
Pf6N2E2_6105 - tRNA-Ser-TGA, at 1,453,036 to 1,453,120
_6105
Pf6N2E2_1240 - Membrane protease family protein y2843, at 1,453,248 to 1,454,102
_1240
Pf6N2E2_1241 - sensor histidine kinase, at 1,454,368 to 1,456,164
_1241
Position (kb)
1453
1454
1455 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1452.296 kb on - strand at 1452.296 kb on - strand at 1452.303 kb on + strand at 1452.303 kb on + strand at 1452.304 kb on - strand at 1452.304 kb on - strand at 1452.307 kb on + strand at 1452.308 kb on - strand, within Pf6N2E2_1239 at 1452.308 kb on - strand, within Pf6N2E2_1239 at 1452.308 kb on - strand, within Pf6N2E2_1239 at 1452.308 kb on - strand, within Pf6N2E2_1239 at 1452.308 kb on - strand, within Pf6N2E2_1239 at 1452.308 kb on - strand, within Pf6N2E2_1239 at 1452.308 kb on - strand, within Pf6N2E2_1239 at 1452.308 kb on - strand, within Pf6N2E2_1239 at 1452.308 kb on - strand, within Pf6N2E2_1239 at 1452.332 kb on - strand, within Pf6N2E2_1239 at 1452.332 kb on - strand, within Pf6N2E2_1239 at 1452.332 kb on - strand, within Pf6N2E2_1239 at 1452.332 kb on - strand, within Pf6N2E2_1239 at 1452.332 kb on - strand, within Pf6N2E2_1239 at 1452.332 kb on - strand, within Pf6N2E2_1239 at 1452.332 kb on - strand, within Pf6N2E2_1239 at 1452.332 kb on - strand, within Pf6N2E2_1239 at 1452.335 kb on + strand, within Pf6N2E2_1239 at 1452.556 kb on - strand, within Pf6N2E2_1239 at 1452.556 kb on - strand, within Pf6N2E2_1239 at 1452.556 kb on - strand, within Pf6N2E2_1239 at 1452.617 kb on - strand, within Pf6N2E2_1239 at 1452.787 kb on + strand, within Pf6N2E2_1239 at 1452.832 kb on + strand, within Pf6N2E2_1239 at 1452.832 kb on + strand, within Pf6N2E2_1239 at 1452.833 kb on - strand, within Pf6N2E2_1239 at 1452.955 kb on + strand at 1452.955 kb on + strand at 1452.955 kb on + strand at 1452.956 kb on - strand at 1452.956 kb on - strand at 1452.969 kb on + strand at 1452.977 kb on + strand at 1452.977 kb on + strand at 1452.977 kb on + strand at 1452.977 kb on + strand at 1452.978 kb on - strand at 1452.982 kb on - strand at 1452.982 kb on - strand at 1453.212 kb on - strand at 1453.256 kb on + strand at 1453.257 kb on - strand at 1453.326 kb on + strand at 1453.355 kb on - strand, within Pf6N2E2_1240 at 1453.419 kb on - strand, within Pf6N2E2_1240 at 1453.464 kb on + strand, within Pf6N2E2_1240 at 1453.465 kb on - strand, within Pf6N2E2_1240 at 1453.465 kb on - strand, within Pf6N2E2_1240 at 1453.482 kb on + strand, within Pf6N2E2_1240 at 1453.560 kb on + strand at 1453.560 kb on + strand, within Pf6N2E2_1240 at 1453.560 kb on + strand, within Pf6N2E2_1240 at 1453.561 kb on - strand, within Pf6N2E2_1240 at 1453.561 kb on - strand, within Pf6N2E2_1240 at 1453.563 kb on - strand, within Pf6N2E2_1240 at 1453.563 kb on - strand, within Pf6N2E2_1240 at 1453.636 kb on + strand, within Pf6N2E2_1240 at 1453.637 kb on - strand, within Pf6N2E2_1240 at 1453.637 kb on - strand, within Pf6N2E2_1240 at 1453.694 kb on + strand, within Pf6N2E2_1240 at 1453.694 kb on + strand, within Pf6N2E2_1240 at 1453.695 kb on - strand, within Pf6N2E2_1240 at 1454.100 kb on + strand at 1454.100 kb on + strand at 1454.100 kb on + strand at 1454.101 kb on - strand at 1454.101 kb on - strand at 1454.101 kb on - strand at 1454.232 kb on + strand at 1454.277 kb on - strand at 1454.277 kb on - strand at 1454.365 kb on - strand at 1454.376 kb on + strand at 1454.376 kb on + strand at 1454.377 kb on - strand at 1454.390 kb on - strand at 1454.406 kb on - strand at 1454.442 kb on - strand at 1454.461 kb on + strand at 1454.461 kb on + strand at 1454.462 kb on - strand at 1454.462 kb on - strand at 1454.462 kb on - strand at 1454.462 kb on - strand at 1454.467 kb on + strand at 1454.468 kb on - strand at 1454.468 kb on - strand at 1454.468 kb on - strand at 1454.468 kb on - strand at 1454.468 kb on - strand at 1454.468 kb on - strand at 1454.468 kb on - strand at 1454.483 kb on - strand at 1454.483 kb on - strand at 1454.747 kb on + strand, within Pf6N2E2_1241 at 1454.747 kb on + strand, within Pf6N2E2_1241 at 1454.747 kb on + strand, within Pf6N2E2_1241 at 1454.788 kb on - strand, within Pf6N2E2_1241 at 1454.788 kb on - strand, within Pf6N2E2_1241 at 1454.788 kb on - strand, within Pf6N2E2_1241 at 1454.894 kb on - strand, within Pf6N2E2_1241 at 1454.894 kb on - strand, within Pf6N2E2_1241 at 1454.894 kb on - strand, within Pf6N2E2_1241 at 1454.894 kb on - strand, within Pf6N2E2_1241
Per-strain Table
Position Strand Gene LocusTag Fraction Magnesium chloride 0.125 M remove 1,452,296 - +0.5 1,452,296 - -0.4 1,452,303 + -3.1 1,452,303 + +0.3 1,452,304 - -1.7 1,452,304 - -0.3 1,452,307 + -0.1 1,452,308 - Pf6N2E2_1239 0.10 +0.7 1,452,308 - Pf6N2E2_1239 0.10 -1.1 1,452,308 - Pf6N2E2_1239 0.10 -0.5 1,452,308 - Pf6N2E2_1239 0.10 -0.1 1,452,308 - Pf6N2E2_1239 0.10 -0.2 1,452,308 - Pf6N2E2_1239 0.10 -1.2 1,452,308 - Pf6N2E2_1239 0.10 +0.2 1,452,308 - Pf6N2E2_1239 0.10 -0.2 1,452,308 - Pf6N2E2_1239 0.10 -0.1 1,452,332 - Pf6N2E2_1239 0.14 +0.9 1,452,332 - Pf6N2E2_1239 0.14 +0.7 1,452,332 - Pf6N2E2_1239 0.14 +1.3 1,452,332 - Pf6N2E2_1239 0.14 +0.2 1,452,332 - Pf6N2E2_1239 0.14 +0.3 1,452,332 - Pf6N2E2_1239 0.14 +0.4 1,452,332 - Pf6N2E2_1239 0.14 -0.1 1,452,332 - Pf6N2E2_1239 0.14 -0.7 1,452,335 + Pf6N2E2_1239 0.14 -0.2 1,452,556 - Pf6N2E2_1239 0.47 -1.8 1,452,556 - Pf6N2E2_1239 0.47 +1.5 1,452,556 - Pf6N2E2_1239 0.47 -1.2 1,452,617 - Pf6N2E2_1239 0.56 -1.8 1,452,787 + Pf6N2E2_1239 0.81 +0.8 1,452,832 + Pf6N2E2_1239 0.88 +0.5 1,452,832 + Pf6N2E2_1239 0.88 -0.1 1,452,833 - Pf6N2E2_1239 0.88 -2.2 1,452,955 + -0.3 1,452,955 + -1.7 1,452,955 + -0.4 1,452,956 - +0.6 1,452,956 - +0.3 1,452,969 + +1.5 1,452,977 + -0.7 1,452,977 + +0.6 1,452,977 + +0.8 1,452,977 + +1.5 1,452,978 - +0.4 1,452,982 - -0.9 1,452,982 - -0.5 1,453,212 - +0.1 1,453,256 + -0.5 1,453,257 - +0.5 1,453,326 + +1.2 1,453,355 - Pf6N2E2_1240 0.13 +0.6 1,453,419 - Pf6N2E2_1240 0.20 +1.5 1,453,464 + Pf6N2E2_1240 0.25 -1.6 1,453,465 - Pf6N2E2_1240 0.25 -0.7 1,453,465 - Pf6N2E2_1240 0.25 -0.1 1,453,482 + Pf6N2E2_1240 0.27 -1.6 1,453,560 + +2.5 1,453,560 + Pf6N2E2_1240 0.36 +1.5 1,453,560 + Pf6N2E2_1240 0.36 +0.7 1,453,561 - Pf6N2E2_1240 0.37 +1.8 1,453,561 - Pf6N2E2_1240 0.37 -0.7 1,453,563 - Pf6N2E2_1240 0.37 +0.1 1,453,563 - Pf6N2E2_1240 0.37 -0.1 1,453,636 + Pf6N2E2_1240 0.45 -0.3 1,453,637 - Pf6N2E2_1240 0.45 +0.6 1,453,637 - Pf6N2E2_1240 0.45 +1.2 1,453,694 + Pf6N2E2_1240 0.52 +1.2 1,453,694 + Pf6N2E2_1240 0.52 +0.4 1,453,695 - Pf6N2E2_1240 0.52 +0.5 1,454,100 + -0.3 1,454,100 + +0.6 1,454,100 + +0.5 1,454,101 - -0.5 1,454,101 - -0.8 1,454,101 - -0.8 1,454,232 + +0.8 1,454,277 - -0.6 1,454,277 - -0.2 1,454,365 - +1.5 1,454,376 + -0.8 1,454,376 + +0.3 1,454,377 - -0.7 1,454,390 - +0.0 1,454,406 - -0.5 1,454,442 - -0.1 1,454,461 + -0.2 1,454,461 + -0.1 1,454,462 - +0.9 1,454,462 - -0.9 1,454,462 - -0.6 1,454,462 - +1.5 1,454,467 + +3.5 1,454,468 - +0.3 1,454,468 - -0.2 1,454,468 - +0.3 1,454,468 - -0.7 1,454,468 - +0.7 1,454,468 - +1.1 1,454,468 - +0.5 1,454,483 - +1.2 1,454,483 - +0.8 1,454,747 + Pf6N2E2_1241 0.21 -0.1 1,454,747 + Pf6N2E2_1241 0.21 +0.5 1,454,747 + Pf6N2E2_1241 0.21 -0.1 1,454,788 - Pf6N2E2_1241 0.23 +0.3 1,454,788 - Pf6N2E2_1241 0.23 -0.6 1,454,788 - Pf6N2E2_1241 0.23 -1.5 1,454,894 - Pf6N2E2_1241 0.29 -0.6 1,454,894 - Pf6N2E2_1241 0.29 +0.9 1,454,894 - Pf6N2E2_1241 0.29 -1.4 1,454,894 - Pf6N2E2_1241 0.29 +0.6
Or see this region's nucleotide sequence